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Annotation base class used for: NCBI gene2go, GAF, and GPAD formats

master . 3cf2fb...a24985 . push triggered

  Data is cleaned up.
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Added a new NCBI gene2go association reader which mimics the namedtuple base use...

master . 821b4f...3cf2fb . push triggered

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minor format str change to accomdate "High_Throughput"

master . 5576d6...821b4f . push triggered

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grammar

master . 67b229...5576d6 . push triggered

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Clarify named tuple contents and simplify code https://github.com/tanghaibao/goa...

master . 0203cc...67b229 . push triggered

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Add documentation describing namedtuple list of GAF lines https://github.com/tan...

master . 2b9db2...0203cc . push triggered

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Merge branch 'mjs2600-fix/add-missing-dependencies'

master . 79bb61...2b9db2 . push triggered

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queued 11s

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Add missing dependencies to `requirements.txt`

master . #124 . pull request triggered

  Data is cleaned up.
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Add missing dependencies to `requirements.txt`

master . #124 . pull request triggered

  Data is cleaned up.
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Add log text with enriched/purified counts for clarity. Sort by p/e first. https...

master . fd3fea...79bb61 . push triggered

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Added FDR to test

master . 399c68...fd3fea . push triggered

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Test that significant terms with zero study terms are reported as purified https...

master . ce9596...399c68 . push triggered

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Merge pull request #121 from alex-wave/patch-1

master . 8269c2...ce9596 . push triggered

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Correct Lin similarity

master . #121 . pull request triggered

  Data is cleaned up.
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Added more info for Lin's similarity score https://github.com/tanghaibao/goatool...

master . 7267a5...8269c2 . push triggered

  Data is cleaned up.
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Updated tests for Gene Ontology's new location for association files

master . 9b9824...7267a5 . push triggered

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Update for new location and name of GeneOntology GAF files

master . 53764a...9b9824 . push triggered

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Check evidence codes seen in NCBI's gene2go for issue #119

master . 51f4e7...53764a . push triggered

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Print cwd

master . 68110b...51f4e7 . push triggered

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Make more downloaded file locs explicit to prevent TravisCI timeout upon downloa...

master . 491089...68110b . push triggered

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