tanghaibao /
goatools
| @@ 78-101 (lines=24) @@ | ||
| 75 | go2color[goid] = color_dflt |
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| 76 | return go2color |
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| 77 | ||
| 78 | def _get_item_str(self, res): |
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| 79 | """Return genes in any of these formats: |
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| 80 | 1. 19264, 17319, 12520, 12043, 74131, 22163, 12575 |
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| 81 | 2. Ptprc, Mif, Cd81, Bcl2, Sash3, Tnfrsf4, Cdkn1a |
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| 82 | 3. 7: Ptprc, Mif, Cd81, Bcl2, Sash3... |
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| 83 | """ |
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| 84 | ipl = self.items_p_line |
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| 85 | prt_items = sorted([self._get_genestr(itemid) for itemid in res.study_items]) |
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| 86 | prt_multiline = [prt_items[i:i+ipl] for i in range(0, len(prt_items), ipl)] |
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| 87 | num_items = len(prt_items) |
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| 88 | if self.study_items_max is None: |
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| 89 | genestr = "\n".join([", ".join(str(e) for e in sublist) for sublist in prt_multiline]) |
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| 90 | return "{N}) {GENES}".format(N=num_items, GENES=genestr) |
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| 91 | else: |
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| 92 | if num_items <= self.study_items_max: |
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| 93 | gene_lines = [", ".join(str(e) for e in sublist) for sublist in prt_multiline] |
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| 94 | genestr = "\n".join(gene_lines) |
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| 95 | return genestr |
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| 96 | else: |
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| 97 | short_list = prt_items[:self.study_items_max] |
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| 98 | short_mult = [short_list[i:i+ipl] for i in range(0, len(short_list), ipl)] |
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| 99 | short_lines = [", ".join(str(e) for e in sublist) for sublist in short_mult] |
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| 100 | short_str = "\n".join(short_lines) |
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| 101 | return "".join(["{N} genes; ".format(N=num_items), short_str, "..."]) |
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| 102 | ||
| 103 | def _get_genestr(self, itemid): |
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| 104 | """Given a geneid, return the string geneid or a gene symbol.""" |
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| @@ 255-277 (lines=23) @@ | ||
| 252 | return self.pltvars.fmtres.format( |
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| 253 | study_count=res.study_count) |
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| 254 | ||
| 255 | def _get_item_str(self, res): |
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| 256 | """Return genes in any of these formats: |
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| 257 | 1. 19264, 17319, 12520, 12043, 74131, 22163, 12575 |
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| 258 | 2. Ptprc, Mif, Cd81, Bcl2, Sash3, Tnfrsf4, Cdkn1a |
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| 259 | 3. 7: Ptprc, Mif, Cd81, Bcl2, Sash3... |
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| 260 | """ |
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| 261 | npl = self.pltvars.items_p_line # Number of items Per Line |
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| 262 | prt_items = sorted([self.__get_genestr(itemid) for itemid in res.study_items]) |
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| 263 | prt_multiline = [prt_items[i:i+npl] for i in range(0, len(prt_items), npl)] |
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| 264 | num_items = len(prt_items) |
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| 265 | if self.study_items_max is None: |
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| 266 | genestr = "\n".join([", ".join(str(e) for e in sublist) for sublist in prt_multiline]) |
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| 267 | return "{N}) {GENES}".format(N=num_items, GENES=genestr) |
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| 268 | else: |
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| 269 | if num_items <= self.study_items_max: |
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| 270 | strs = [", ".join(str(e) for e in sublist) for sublist in prt_multiline] |
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| 271 | genestr = "\n".join([", ".join(str(e) for e in sublist) for sublist in prt_multiline]) |
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| 272 | return genestr |
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| 273 | else: |
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| 274 | short_list = prt_items[:self.study_items_max] |
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| 275 | short_mult = [short_list[i:i+npl] for i in range(0, len(short_list), npl)] |
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| 276 | short_str = "\n".join([", ".join(str(e) for e in sublist) for sublist in short_mult]) |
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| 277 | return "".join(["{N} genes; ".format(N=num_items), short_str, "..."]) |
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| 278 | ||
| 279 | def __get_genestr(self, itemid): |
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| 280 | """Given a geneid, return the string geneid or a gene symbol.""" |
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