tanghaibao /
goatools
| @@ 106-120 (lines=15) @@ | ||
| 103 | props] # 12 Annotation_Properties |
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| 104 | return ntgpadobj._make(gpadvals) |
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| 105 | ||
| 106 | @staticmethod |
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| 107 | def _rd_fld_vals(name, val, set_list_ft=True, qty_min=0, qty_max=None): |
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| 108 | """Further split a GPAD value within a single field.""" |
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| 109 | if not val and qty_min == 0: |
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| 110 | return [] if set_list_ft else set() |
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| 111 | vals = val.split('|') # Use a pipe to separate entries |
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| 112 | num_vals = len(vals) |
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| 113 | assert num_vals >= qty_min, \ |
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| 114 | "FLD({F}): MIN QUANTITY({Q}) WASN'T MET: {V}".format( |
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| 115 | F=name, Q=qty_min, V=vals) |
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| 116 | if qty_max is not None: |
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| 117 | assert num_vals <= qty_max, \ |
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| 118 | "FLD({F}): MAX QUANTITY({Q}) EXCEEDED: {V}".format( |
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| 119 | F=name, Q=qty_max, V=vals) |
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| 120 | return vals if set_list_ft else set(vals) |
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| 121 | ||
| 122 | @staticmethod |
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| 123 | def _get_taxon(taxon): |
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| @@ 229-241 (lines=13) @@ | ||
| 226 | gafvals.append(None) |
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| 227 | return self.ntgafobj._make(gafvals) |
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| 228 | ||
| 229 | @staticmethod |
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| 230 | def _rd_fld_vals(name, val, set_list_ft=True, qty_min=0, qty_max=None): |
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| 231 | """Further split a GAF value within a single field.""" |
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| 232 | if not val and qty_min == 0: |
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| 233 | return [] if set_list_ft else set() |
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| 234 | vals = val.split('|') # Use a pipe to separate entries |
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| 235 | num_vals = len(vals) |
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| 236 | assert num_vals >= qty_min, \ |
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| 237 | "FIELD({F}): MIN QUANTITY({Q}) WASN'T MET: {V}".format(F=name, Q=qty_min, V=vals) |
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| 238 | if qty_max is not None: |
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| 239 | assert num_vals <= qty_max, \ |
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| 240 | "FIELD({F}): MAX QUANTITY({Q}) EXCEEDED: {V}".format(F=name, Q=qty_max, V=vals) |
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| 241 | return vals if set_list_ft else set(vals) |
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| 242 | ||
| 243 | def _chk_qualifier(self, qualifiers): |
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| 244 | """Check that qualifiers are expected values.""" |
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