@@ -50,7 +50,7 @@ |
||
| 50 | 50 | } |
| 51 | 51 | } |
| 52 | 52 | |
| 53 | -} else { |
|
| 53 | +}else { |
|
| 54 | 54 | $availableVisits=[]; |
| 55 | 55 | } |
| 56 | 56 | |
@@ -37,16 +37,16 @@ discard block |
||
| 37 | 37 | Session::checkSession(); |
| 38 | 38 | $linkpdo=Session::getLinkpdo(); |
| 39 | 39 | |
| 40 | -$timeStamp = time(); |
|
| 41 | -$id_visit = $_POST['id_visit']; |
|
| 42 | -$nbOfInstances = $_POST['totalDicomFiles']; |
|
| 40 | +$timeStamp=time(); |
|
| 41 | +$id_visit=$_POST['id_visit']; |
|
| 42 | +$nbOfInstances=$_POST['totalDicomFiles']; |
|
| 43 | 43 | $anonFromOrthancId=$_POST['originalOrthancStudyID']; |
| 44 | 44 | $username=$_SESSION['username']; |
| 45 | 45 | $study=$_SESSION['study']; |
| 46 | 46 | $role=$_SESSION['role']; |
| 47 | -$tusFilesID = $_POST['sucessIDsUploaded']; |
|
| 47 | +$tusFilesID=$_POST['sucessIDsUploaded']; |
|
| 48 | 48 | |
| 49 | -$unzipedPath = $_SERVER['DOCUMENT_ROOT'].'/data/upload/temp/'.$timeStamp.'_'.$id_visit; |
|
| 49 | +$unzipedPath=$_SERVER['DOCUMENT_ROOT'].'/data/upload/temp/'.$timeStamp.'_'.$id_visit; |
|
| 50 | 50 | |
| 51 | 51 | $visitObject=new Visit($id_visit, $linkpdo); |
| 52 | 52 | $userObject=new User($username, $linkpdo); |
@@ -71,8 +71,8 @@ discard block |
||
| 71 | 71 | } |
| 72 | 72 | |
| 73 | 73 | //Unzip each uploaded file and remove them from tus |
| 74 | - foreach($tusFilesID as $fileName){ |
|
| 75 | - $tempZipPath = get_tus_file($fileName); |
|
| 74 | + foreach ($tusFilesID as $fileName) { |
|
| 75 | + $tempZipPath=get_tus_file($fileName); |
|
| 76 | 76 | |
| 77 | 77 | $zipSize=filesize($tempZipPath); |
| 78 | 78 | $uncompressedzipSize=get_zip_originalsize($tempZipPath); |
@@ -168,7 +168,7 @@ discard block |
||
| 168 | 168 | $files[]=$file->getPathname(); |
| 169 | 169 | } |
| 170 | 170 | |
| 171 | - if(sizeof($files) != $nbOfInstances){ |
|
| 171 | + if (sizeof($files) != $nbOfInstances) { |
|
| 172 | 172 | throw new Exception("Number Of Uploaded Files dosen't match expected instance number"); |
| 173 | 173 | } |
| 174 | 174 | |
@@ -271,23 +271,23 @@ discard block |
||
| 271 | 271 | |
| 272 | 272 | function get_tus_file($fileName) { |
| 273 | 273 | |
| 274 | - $client = new Client([ |
|
| 274 | + $client=new Client([ |
|
| 275 | 275 | // Base URI is used with relative requests |
| 276 | 276 | 'base_uri' => TUS_SERVER.'/tus/', |
| 277 | 277 | 'headers' => ['Tus-Resumable' => '1.0.0'] |
| 278 | 278 | ]); |
| 279 | - $downloadedFileName = tempnam(sys_get_temp_dir(), 'dicom'); |
|
| 279 | + $downloadedFileName=tempnam(sys_get_temp_dir(), 'dicom'); |
|
| 280 | 280 | |
| 281 | - $resource = fopen( $downloadedFileName, 'r+'); |
|
| 281 | + $resource=fopen($downloadedFileName, 'r+'); |
|
| 282 | 282 | |
| 283 | 283 | $client->request('GET', $fileName, ['sink' => $resource]); |
| 284 | 284 | |
| 285 | 285 | return $downloadedFileName; |
| 286 | 286 | } |
| 287 | 287 | |
| 288 | -function delete_tus_file($fileName){ |
|
| 288 | +function delete_tus_file($fileName) { |
|
| 289 | 289 | |
| 290 | - $client = new Client([ |
|
| 290 | + $client=new Client([ |
|
| 291 | 291 | // Base URI is used with relative requests |
| 292 | 292 | 'base_uri' => TUS_SERVER.'/tus/', |
| 293 | 293 | 'headers' => ['Tus-Resumable' => '1.0.0'] |
@@ -134,14 +134,14 @@ discard block |
||
| 134 | 134 | //Log import |
| 135 | 135 | Tracker::logActivity($username, $role, $study, $visitObject->id_visit, "Upload Series", $logDetails); |
| 136 | 136 | |
| 137 | - }catch (Throwable $e1) { |
|
| 137 | + } catch (Throwable $e1) { |
|
| 138 | 138 | error_log($e1->getMessage()); |
| 139 | 139 | handleException($e1); |
| 140 | 140 | header('HTTP/1.0 500 Internal Server Error'); |
| 141 | 141 | } |
| 142 | 142 | |
| 143 | 143 | |
| 144 | -}else { |
|
| 144 | +} else { |
|
| 145 | 145 | header('HTTP/1.0 403 Forbidden'); |
| 146 | 146 | die('You are not allowed to access this file.'); |
| 147 | 147 | } |
@@ -196,11 +196,11 @@ discard block |
||
| 196 | 196 | |
| 197 | 197 | if (count($importedMap) == 1 && $importedInstances == $nbOfInstances) { |
| 198 | 198 | return $importedMap; |
| 199 | - }else { |
|
| 199 | + } else { |
|
| 200 | 200 | //These error shall never occur |
| 201 | 201 | if (count($importedMap) > 1) { |
| 202 | 202 | throw new Exception("More than one study in Zip"); |
| 203 | - }else if ($importedInstances != $nbOfInstances) { |
|
| 203 | + } else if ($importedInstances != $nbOfInstances) { |
|
| 204 | 204 | throw new Exception("Imported DICOM not matching announced number of Instances"); |
| 205 | 205 | |
| 206 | 206 | } |
@@ -216,8 +216,11 @@ discard block |
||
| 216 | 216 | $it=new RecursiveDirectoryIterator($directory, FilesystemIterator::SKIP_DOTS); |
| 217 | 217 | $it=new RecursiveIteratorIterator($it, RecursiveIteratorIterator::CHILD_FIRST); |
| 218 | 218 | foreach ($it as $file) { |
| 219 | - if ($file->isDir()) rmdir($file->getPathname()); |
|
| 220 | - else unlink($file->getPathname()); |
|
| 219 | + if ($file->isDir()) { |
|
| 220 | + rmdir($file->getPathname()); |
|
| 221 | + } else { |
|
| 222 | + unlink($file->getPathname()); |
|
| 223 | + } |
|
| 221 | 224 | } |
| 222 | 225 | rmdir($directory); |
| 223 | 226 | } |