skchem.target_prediction.AbstractTargetPredictionAlgorithm.predict_proba() - Code Metrics - Inspection of "updated pylintrc" - richlewis42/scikit-chem - Measure and Improve Code Quality continuously with Scrutinizer

Completed

Push — master ( 2bc047...202252 )

by Rich

created 2016-04-14 16:47 UTC

TargetPredictionAlgorithm.predict_proba() A

↳ Parent: AbstractTargetPredictionAlgorithm

Complexity

Conditions

Size

Total Lines

Duplication

Lines	0
Ratio	0 %

Metric	Value
cc	4
dl	0
loc	9
rs	9.2

#! /usr/bin/env python
#
# Copyright (C) 2007-2009 Rich Lewis <[email protected]>
# License: 3-clause BSD

"""
skchem.target_prediction.target_prediction

Target prediction base class
"""

import pandas as pd
# .scrutinizer.yml
before_commands:
    - sudo pip install abc # Python2
    - sudo pip3 install abc # Python3
from skchem import Mol

class AbstractTargetPredictionAlgorithm(object):


    """abstract target prediction class, inherit from this for a target prediction algorithm"""

    def predict(self, obj):

        """ Predict the targets for a compound or compound DataFrame """

        if isinstance(obj, Mol):
            return self._m_predict(obj)

        if isinstance(obj, pd.Series) or isinstance(obj, pd.DataFrame):
            return self._df_predict(obj)

    def predict_proba(self, obj):

        """ Predict the probability of hitting targets for a compound or compound DataFrame """

        if isinstance(obj, Mol):
            return self._m_predict_proba(obj)

        if isinstance(obj, pd.Series) or isinstance(obj, pd.DataFrame):
            return self._df_predict_proba(obj)

    def predict_log_proba(self, obj):

        """ Predict the log probability of hitting target for a compound or compound DataFrame """

        if isinstance(obj, Mol):
            return self._m_predict_log_proba(obj)

        if isinstance(obj, pd.Series) or isinstance(obj, pd.DataFrame):
            return self._df_predict_log_proba(obj)

    def _m_predict(self, m):


        """ Overload """

        raise NotImplementedError

    def _m_predict_proba(self, m):


        """ Overload """

        raise NotImplementedError

    def _m_predict_log_proba(self, m):


        """ Overload """

        raise NotImplementedError

    def _df_predict(self, df):


        """ Overload for prediction """

        raise NotImplementedError

    def _df_predict_proba(self, df):


        """ Overload for prediction """

        raise NotImplementedError

    def _df_predict_log_proba(self, df):


        """ Overload for prediction """

        raise NotImplementedError

    def __call__(self, obj):

        """ Predict the targets for a compound or compound DataFrame """

        self.predict(obj)


1			#! /usr/bin/env python
2			#
3			# Copyright (C) 2007-2009 Rich Lewis <[email protected]>
4			# License: 3-clause BSD
5
6			"""
7			skchem.target_prediction.target_prediction
8
9			Target prediction base class
10			"""
11
12			import pandas as pd
			0 ignored issues – show Configuration introduced 2016-01-19 16:21 UTC by Report Bug Copy Issue Report The import `pandas` could not be resolved. This can be caused by one of the following: 1. Missing Dependencies This error could indicate a configuration issue of Pylint. Make sure that your libraries are available by adding the necessary commands. # .scrutinizer.yml before_commands: - sudo pip install abc # Python2 - sudo pip3 install abc # Python3 Tip: We are currently not using virtualenv to run pylint, when installing your modules make sure to use the command for the correct version. 2. Missing __init__.py files This error could also result from missing `__init__.py` files in your module folders. Make sure that you place one file in each sub-folder. Loading history...
13			from skchem import Mol
14
15			class AbstractTargetPredictionAlgorithm(object):
			0 ignored issues – show Complexity introduced 2016-01-19 16:21 UTC by Report Bug Copy Issue Report This abstract class seems to be used only once. Abstract classes which are used only once can usually be inlined into the class which already uses this abstract class. Loading history...
16
17			"""abstract target prediction class, inherit from this for a target prediction algorithm"""
18
19			def predict(self, obj):
20
21			""" Predict the targets for a compound or compound DataFrame """
22
23			if isinstance(obj, Mol):
24			return self._m_predict(obj)
25
26			if isinstance(obj, pd.Series) or isinstance(obj, pd.DataFrame):
27			return self._df_predict(obj)
28
29			def predict_proba(self, obj):
30
31			""" Predict the probability of hitting targets for a compound or compound DataFrame """
32
33			if isinstance(obj, Mol):
34			return self._m_predict_proba(obj)
35
36			if isinstance(obj, pd.Series) or isinstance(obj, pd.DataFrame):
37			return self._df_predict_proba(obj)
38
39			def predict_log_proba(self, obj):
40
41			""" Predict the log probability of hitting target for a compound or compound DataFrame """
42
43			if isinstance(obj, Mol):
44			return self._m_predict_log_proba(obj)
45
46			if isinstance(obj, pd.Series) or isinstance(obj, pd.DataFrame):
47			return self._df_predict_log_proba(obj)
48
49			def _m_predict(self, m):
			0 ignored issues – show Coding Style Naming introduced 2016-04-14 16:48 UTC by Report Bug Copy Issue Report The name `m` does not conform to the argument naming conventions (`[a-z_][a-z0-9_]{2,30}$`). This check looks for invalid names for a range of different identifiers. You can set regular expressions to which the identifiers must conform if the defaults do not match your requirements. If your project includes a Pylint configuration file, the settings contained in that file take precedence. To find out more about Pylint, please refer to their site. Loading history...
50
51			""" Overload """
52
53			raise NotImplementedError
54
55			def _m_predict_proba(self, m):
			0 ignored issues – show Coding Style Naming introduced 2016-04-14 16:48 UTC by Report Bug Copy Issue Report The name `m` does not conform to the argument naming conventions (`[a-z_][a-z0-9_]{2,30}$`). This check looks for invalid names for a range of different identifiers. You can set regular expressions to which the identifiers must conform if the defaults do not match your requirements. If your project includes a Pylint configuration file, the settings contained in that file take precedence. To find out more about Pylint, please refer to their site. Loading history...
56
57			""" Overload """
58
59			raise NotImplementedError
60
61			def _m_predict_log_proba(self, m):
			0 ignored issues – show Coding Style Naming introduced 2016-04-14 16:48 UTC by Report Bug Copy Issue Report The name `m` does not conform to the argument naming conventions (`[a-z_][a-z0-9_]{2,30}$`). This check looks for invalid names for a range of different identifiers. You can set regular expressions to which the identifiers must conform if the defaults do not match your requirements. If your project includes a Pylint configuration file, the settings contained in that file take precedence. To find out more about Pylint, please refer to their site. Loading history...
62
63			""" Overload """
64
65			raise NotImplementedError
66
67			def _df_predict(self, df):
			0 ignored issues – show Coding Style Naming introduced 2016-04-14 16:48 UTC by Report Bug Copy Issue Report The name `df` does not conform to the argument naming conventions (`[a-z_][a-z0-9_]{2,30}$`). This check looks for invalid names for a range of different identifiers. You can set regular expressions to which the identifiers must conform if the defaults do not match your requirements. If your project includes a Pylint configuration file, the settings contained in that file take precedence. To find out more about Pylint, please refer to their site. Loading history...
68
69			""" Overload for prediction """
70
71			raise NotImplementedError
72
73			def _df_predict_proba(self, df):
			0 ignored issues – show Coding Style Naming introduced 2016-04-14 16:48 UTC by Report Bug Copy Issue Report The name `df` does not conform to the argument naming conventions (`[a-z_][a-z0-9_]{2,30}$`). This check looks for invalid names for a range of different identifiers. You can set regular expressions to which the identifiers must conform if the defaults do not match your requirements. If your project includes a Pylint configuration file, the settings contained in that file take precedence. To find out more about Pylint, please refer to their site. Loading history...
74
75			""" Overload for prediction """
76
77			raise NotImplementedError
78
79			def _df_predict_log_proba(self, df):
			0 ignored issues – show Coding Style Naming introduced 2016-04-14 16:48 UTC by Report Bug Copy Issue Report The name `df` does not conform to the argument naming conventions (`[a-z_][a-z0-9_]{2,30}$`). This check looks for invalid names for a range of different identifiers. You can set regular expressions to which the identifiers must conform if the defaults do not match your requirements. If your project includes a Pylint configuration file, the settings contained in that file take precedence. To find out more about Pylint, please refer to their site. Loading history...
80
81			""" Overload for prediction """
82
83			raise NotImplementedError
84
85			def __call__(self, obj):
86
87			""" Predict the targets for a compound or compound DataFrame """
88
89			self.predict(obj)
90

richlewis42 / scikit-chem

Push — master ( 2bc047...202252 )

TargetPredictionAlgorithm.predict_proba() A

Complexity

Size

Duplication

1. Missing Dependencies

2. Missing __init__.py files

Duplication Side-by-Side

Filter issues like

2. Missing init.py files