AbstractTargetPredictionAlgorithm

Complexity

Total Complexity

19

Size/Duplication

Total Lines	75
Duplicated Lines	0 %

10 Methods

Rating	Name	Duplication	Size	Complexity
A	_m_predict()	0	5	1
A	_m_predict_log_proba()	0	5	1
A	predict()	0	9	4
A	_m_predict_proba()	0	5	1
A	__call__()	0	5	1
A	_df_predict_proba()	0	5	1
A	_df_predict_log_proba()	0	5	1
A	_df_predict()	0	5	1
A	predict_log_proba()	0	9	4
A	predict_proba()	0	9	4

#! /usr/bin/env python
#
# Copyright (C) 2007-2009 Rich Lewis <rl403@cam.ac.uk>
# License: 3-clause BSD

"""
skchem.target_prediction.target_prediction

Target prediction base class
"""

import pandas as pd

The import pandas could not be resolved.

from skchem import Mol

class AbstractTargetPredictionAlgorithm(object):

This abstract class seems to be used only once.

    """abstract target prediction class, inherit from this for a target prediction algorithm"""

    def predict(self, obj):

        """ Predict the targets for a compound or compound DataFrame """

        if isinstance(obj, Mol):
            return self._m_predict(obj)

        if isinstance(obj, pd.Series) or isinstance(obj, pd.DataFrame):
            return self._df_predict(obj)

    def predict_proba(self, obj):

        """ Predict the probability of hitting targets for a compound or compound DataFrame """

        if isinstance(obj, Mol):
            return self._m_predict_proba(obj)

        if isinstance(obj, pd.Series) or isinstance(obj, pd.DataFrame):
            return self._df_predict_proba(obj)

    def predict_log_proba(self, obj):

        """ Predict the log probability of hitting target for a compound or compound DataFrame """

        if isinstance(obj, Mol):
            return self._m_predict_log_proba(obj)

        if isinstance(obj, pd.Series) or isinstance(obj, pd.DataFrame):
            return self._df_predict_log_proba(obj)

    def _m_predict(self, m):

The name m does not conform to the argument naming conventions ([a-z_][a-z0-9_]{2,30}$).

        """ Overload """

        raise NotImplementedError

    def _m_predict_proba(self, m):

The name m does not conform to the argument naming conventions ([a-z_][a-z0-9_]{2,30}$).

        """ Overload """

        raise NotImplementedError

    def _m_predict_log_proba(self, m):

The name m does not conform to the argument naming conventions ([a-z_][a-z0-9_]{2,30}$).

        """ Overload """

        raise NotImplementedError

    def _df_predict(self, df):

The name df does not conform to the argument naming conventions ([a-z_][a-z0-9_]{2,30}$).

        """ Overload for prediction """

        raise NotImplementedError

    def _df_predict_proba(self, df):

The name df does not conform to the argument naming conventions ([a-z_][a-z0-9_]{2,30}$).

        """ Overload for prediction """

        raise NotImplementedError

    def _df_predict_log_proba(self, df):

The name df does not conform to the argument naming conventions ([a-z_][a-z0-9_]{2,30}$).

        """ Overload for prediction """

        raise NotImplementedError

    def __call__(self, obj):

        """ Predict the targets for a compound or compound DataFrame """

        self.predict(obj)