DnaMatching::handle() - Code Metrics - laravel-liberu/genealogy - Measure and Improve Code Quality continuously with Scrutinizer

DnaMatching::handle() A
last analyzed 2023-10-09 08:54 UTC

↳ Parent: DnaMatching

Complexity

Conditions	3
Paths	3

Size

Total Lines	55
Code Lines	34

Duplication

Lines	0
Ratio	0 %

Importance

Changes	6
Bugs	2	Features	0

Metric	Value
cc	3
eloc	34
c	6
b	2
f	0
nc	3
nop	0
dl	0
loc	55
rs	9.376

How to fix Long Method

<?php

namespace App\Jobs;

use App\Models\Dna;
use App\Models\DnaMatching as DM;
use App\Models\User;
use Illuminate\Bus\Queueable;
use Illuminate\Contracts\Queue\ShouldQueue;
use Illuminate\Foundation\Bus\Dispatchable;
use Illuminate\Queue\InteractsWithQueue;
use Illuminate\Queue\SerializesModels;
use Illuminate\Support\Facades\Log;

class DnaMatching implements ShouldQueue
{
    use Dispatchable, InteractsWithQueue, Queueable, SerializesModels;


    public int $timeout = 0;
    public int $tries = 1;

    /**
     * Create a new job instance.
     *
     * @return void
     */
    public function __construct(protected $current_user, protected $var_name, protected $file_name)
    {
    }

    /**
     * Execute the job.
     *
     * @return void
     */
    public function handle()
    {
        $user = $this->current_user;
        $dnas = Dna::where('variable_name', '!=', $this->var_name)->get();
        $mpath = app_path();

        foreach ($dnas as $dna) {
            Log::info(json_encode($dna, JSON_THROW_ON_ERROR));
            Log::info(storage_path('/app/public/dna/output/shared_dna_'.$this->var_name.'_'.$dna->variable_name.'_'.$this->file_name.'_'.$dna->file_name));
            //            system('/usr/bin/python3 /home/genealogia/public_html/dna.py ' . $this->var_name . ' ' . $dna->variable_name . ' ' . '/home/genealogia/public_html/storage/app/dna/'. $this->file_name . ' ' . '/home/genealogia/public_html/storage/app/dna/'. $dna->file_name);
            // chdir('/home/familytree365/domains/api.familytree365.com/genealogy/app');
            chdir($mpath);
            // exec('python dna.py '.$this->var_name.' '.$dna->variable_name.' '.$this->file_name.' '.$dna->file_name, $dna_output);
            $result = exec('python3 dna.py '.$this->var_name.' '.$dna->variable_name.' '.$this->file_name.' '.$dna->file_name);
//            $resultData = json_decode($result, true, 512, JSON_THROW_ON_ERROR);
            $resultData = json_decode($result, true, 512, JSON_THROW_ON_ERROR);
            // chmod(storage_path('/app/public/dna/output/shared_dna_'.$this->var_name.'_'.$dna->variable_name.'_'.$this->file_name.'_'.$dna->file_name), 0777);

            $dm = new DM();
            $dm->user_id = $user->id;
            $dm->match_id = $dna->user_id;
            $match_name_user = User::with('person')->find($dna->user_id);
            $match_name = $match_name_user->person->name;

            $dm->match_name = $match_name;
            // $dm->image = 'shared_dna_'.$this->var_name.'_'.$dna->variable_name.'.png';
            // $dm->image = 'shared_dna_'.$this->var_name.'_'.$dna->variable_name.'_0p75cM_1100snps_GRCh37_HapMap2.png';
            $dm->image = env('APP_URL').'/storage/dna/output/shared_dna_'.$this->var_name.'_'.
                    $dna->variable_name.'_0p75cM_1100snps_GRCh37_HapMap2.png';
            // $dm->file1 = 'discordant_snps_'.$this->var_name.'_'.$dna->variable_name.'_GRCh37.csv';
            $dm->file1 = 'discordant_snps_'.$this->var_name.'_'.$dna->variable_name.'_GRCh37.csv';
            // $dm->file2 = 'shared_dna_one_chrom_'.$this->var_name.'_'.$dna->variable_name.'_GRCh37.csv';
            $dm->file2 = 'shared_dna_one_chrom_'.$this->var_name.'_'.$dna->variable_name.'_0p75cM_1100snps_GRCh37_HapMap2.csv';

            $dm->total_shared_cm = round($resultData['total_cms'], 2);
            $dm->largest_cm_segment = round($resultData['largest_cm'], 2);

            $dm->save();
            if ($dna->user_id !== $user->id) {
                $dm2 = new DM();
                $dm2->user_id = $dna->user_id;
                $dm2->match_id = $user->id;
                $match_name_user = User::with('person')->find($dna->user_id);
                $dm2->match_name = $match_name_user->person->name;
                // $dm->image = 'shared_dna_'.$this->var_name.'_'.$dna->variable_name.'.png';
                // $dm->image = 'shared_dna_'.$this->var_name.'_'.$dna->variable_name.'_0p75cM_1100snps_GRCh37_HapMap2.png';
                $dm2->image = env('APP_URL').'/storage/dna/output/shared_dna_'.$this->var_name.'_'.$dna->variable_name.'_0p75cM_1100snps_GRCh37_HapMap2.png';
                // $dm->file1 = 'discordant_snps_'.$this->var_name.'_'.$dna->variable_name.'_GRCh37.csv';
                $dm2->file1 = 'discordant_snps_'.$this->var_name.'_'.$dna->variable_name.'_GRCh37.csv';
                // $dm->file2 = 'shared_dna_one_chrom_'.$this->var_name.'_'.$dna->variable_name.'_GRCh37.csv';
                $dm2->file2 = 'shared_dna_one_chrom_'.$this->var_name.'_'.$dna->variable_name.'_0p75cM_1100snps_GRCh37_HapMap2.csv';

                $dm2->total_shared_cm = round($resultData['total_cms'], 2);
                $dm2->largest_cm_segment = round($resultData['largest_cm'], 2);

                $dm2->save();
            }
            // $data = readCSV(storage_path('app'.DIRECTORY_SEPARATOR.'dna'.DIRECTORY_SEPARATOR.'output'.DIRECTORY_SEPARATOR.$dm->file1), ',');
            // array_shift($data);
            // $data = writeCSV(storage_path('app'.DIRECTORY_SEPARATOR.'dna'.DIRECTORY_SEPARATOR.'output'.DIRECTORY_SEPARATOR.$dm->file1), $data);

            // $data = readCSV(storage_path('app'.DIRECTORY_SEPARATOR.'dna'.DIRECTORY_SEPARATOR.'output'.DIRECTORY_SEPARATOR.$dm->file2), ',');
            // array_shift($data);

            // $temp_data = $data;
            // array_shift($temp_data);
            // array_shift($temp_data);
            // $total_cms = 0;
            // $largest_cm = 0;
            // foreach ($temp_data as $line) {
            //     if ($line[4] >= $largest_cm) {
            //         $largest_cm = $line[4];
            //     }
            //     $total_cms = $total_cms + $line[4];
            // }
            // $dm->user_id = $user->id;
            // $dm->total_shared_cm = $total_cms;
            // $dm->largest_cm_segment = round($largest_cm, 2);
            // $dm->save();

            // $data = writeCSV(storage_path('app'.DIRECTORY_SEPARATOR.'dna'.DIRECTORY_SEPARATOR.'output'.DIRECTORY_SEPARATOR.$dm->file2), $data);
        }
    }
}


1			<?php
2
3			namespace App\Jobs;
4
5			use App\Models\Dna;
6			use App\Models\DnaMatching as DM;
7			use App\Models\User;
8			use Illuminate\Bus\Queueable;
9			use Illuminate\Contracts\Queue\ShouldQueue;
10			use Illuminate\Foundation\Bus\Dispatchable;
11			use Illuminate\Queue\InteractsWithQueue;
12			use Illuminate\Queue\SerializesModels;
13			use Illuminate\Support\Facades\Log;
14
15			class DnaMatching implements ShouldQueue
16			{
17			use Dispatchable, InteractsWithQueue, Queueable, SerializesModels;
			0 ignored issues – show introduced 2023-06-15 05:27 UTC by Report Bug Copy Issue Report The trait `Illuminate\Queue\SerializesModels` requires some properties which are not provided by `App\Jobs\DnaMatching`: `$collectionClass`, `$id`, `$relations`, `$class`, `$keyBy` Loading history...
18
19			public int $timeout = 0;
20			public int $tries = 1;
21
22			/**
23			* Create a new job instance.
24			*
25			* @return void
26			*/
27			public function __construct(protected $current_user, protected $var_name, protected $file_name)
28			{
29			}
30
31			/**
32			* Execute the job.
33			*
34			* @return void
35			*/
36			public function handle()
37			{
38			$user = $this->current_user;
39			$dnas = Dna::where('variable_name', '!=', $this->var_name)->get();
40			$mpath = app_path();
41
42			foreach ($dnas as $dna) {
43			Log::info(json_encode($dna, JSON_THROW_ON_ERROR));
44			Log::info(storage_path('/app/public/dna/output/shared_dna_'.$this->var_name.'_'.$dna->variable_name.'_'.$this->file_name.'_'.$dna->file_name));
45			// system('/usr/bin/python3 /home/genealogia/public_html/dna.py ' . $this->var_name . ' ' . $dna->variable_name . ' ' . '/home/genealogia/public_html/storage/app/dna/'. $this->file_name . ' ' . '/home/genealogia/public_html/storage/app/dna/'. $dna->file_name);
46			// chdir('/home/familytree365/domains/api.familytree365.com/genealogy/app');
47			chdir($mpath);
48			// exec('python dna.py '.$this->var_name.' '.$dna->variable_name.' '.$this->file_name.' '.$dna->file_name, $dna_output);
49			$result = exec('python3 dna.py '.$this->var_name.' '.$dna->variable_name.' '.$this->file_name.' '.$dna->file_name);
50			// $resultData = json_decode($result, true, 512, JSON_THROW_ON_ERROR);
51			$resultData = json_decode($result, true, 512, JSON_THROW_ON_ERROR);
52			// chmod(storage_path('/app/public/dna/output/shared_dna_'.$this->var_name.'_'.$dna->variable_name.'_'.$this->file_name.'_'.$dna->file_name), 0777);
53
54			$dm = new DM();
55			$dm->user_id = $user->id;
56			$dm->match_id = $dna->user_id;
57			$match_name_user = User::with('person')->find($dna->user_id);
58			$match_name = $match_name_user->person->name;
			0 ignored issues – show Bug introduced 2023-06-15 05:27 UTC by Report Bug Copy Issue Report The property `person` does not exist on `App\Models\User`. Did you mean `person_id`? Loading history...
59			$dm->match_name = $match_name;
60			// $dm->image = 'shared_dna_'.$this->var_name.'_'.$dna->variable_name.'.png';
61			// $dm->image = 'shared_dna_'.$this->var_name.'_'.$dna->variable_name.'_0p75cM_1100snps_GRCh37_HapMap2.png';
62			$dm->image = env('APP_URL').'/storage/dna/output/shared_dna_'.$this->var_name.'_'.
63			$dna->variable_name.'_0p75cM_1100snps_GRCh37_HapMap2.png';
64			// $dm->file1 = 'discordant_snps_'.$this->var_name.'_'.$dna->variable_name.'_GRCh37.csv';
65			$dm->file1 = 'discordant_snps_'.$this->var_name.'_'.$dna->variable_name.'_GRCh37.csv';
66			// $dm->file2 = 'shared_dna_one_chrom_'.$this->var_name.'_'.$dna->variable_name.'_GRCh37.csv';
67			$dm->file2 = 'shared_dna_one_chrom_'.$this->var_name.'_'.$dna->variable_name.'_0p75cM_1100snps_GRCh37_HapMap2.csv';
68
69			$dm->total_shared_cm = round($resultData['total_cms'], 2);
70			$dm->largest_cm_segment = round($resultData['largest_cm'], 2);
71
72			$dm->save();
73			if ($dna->user_id !== $user->id) {
74			$dm2 = new DM();
75			$dm2->user_id = $dna->user_id;
76			$dm2->match_id = $user->id;
77			$match_name_user = User::with('person')->find($dna->user_id);
78			$dm2->match_name = $match_name_user->person->name;
79			// $dm->image = 'shared_dna_'.$this->var_name.'_'.$dna->variable_name.'.png';
80			// $dm->image = 'shared_dna_'.$this->var_name.'_'.$dna->variable_name.'_0p75cM_1100snps_GRCh37_HapMap2.png';
81			$dm2->image = env('APP_URL').'/storage/dna/output/shared_dna_'.$this->var_name.'_'.$dna->variable_name.'_0p75cM_1100snps_GRCh37_HapMap2.png';
82			// $dm->file1 = 'discordant_snps_'.$this->var_name.'_'.$dna->variable_name.'_GRCh37.csv';
83			$dm2->file1 = 'discordant_snps_'.$this->var_name.'_'.$dna->variable_name.'_GRCh37.csv';
84			// $dm->file2 = 'shared_dna_one_chrom_'.$this->var_name.'_'.$dna->variable_name.'_GRCh37.csv';
85			$dm2->file2 = 'shared_dna_one_chrom_'.$this->var_name.'_'.$dna->variable_name.'_0p75cM_1100snps_GRCh37_HapMap2.csv';
86
87			$dm2->total_shared_cm = round($resultData['total_cms'], 2);
88			$dm2->largest_cm_segment = round($resultData['largest_cm'], 2);
89
90			$dm2->save();
91			}
92			// $data = readCSV(storage_path('app'.DIRECTORY_SEPARATOR.'dna'.DIRECTORY_SEPARATOR.'output'.DIRECTORY_SEPARATOR.$dm->file1), ',');
93			// array_shift($data);
94			// $data = writeCSV(storage_path('app'.DIRECTORY_SEPARATOR.'dna'.DIRECTORY_SEPARATOR.'output'.DIRECTORY_SEPARATOR.$dm->file1), $data);
95
96			// $data = readCSV(storage_path('app'.DIRECTORY_SEPARATOR.'dna'.DIRECTORY_SEPARATOR.'output'.DIRECTORY_SEPARATOR.$dm->file2), ',');
97			// array_shift($data);
98
99			// $temp_data = $data;
100			// array_shift($temp_data);
101			// array_shift($temp_data);
102			// $total_cms = 0;
103			// $largest_cm = 0;
104			// foreach ($temp_data as $line) {
105			// if ($line[4] >= $largest_cm) {
106			// $largest_cm = $line[4];
107			// }
108			// $total_cms = $total_cms + $line[4];
109			// }
110			// $dm->user_id = $user->id;
111			// $dm->total_shared_cm = $total_cms;
112			// $dm->largest_cm_segment = round($largest_cm, 2);
113			// $dm->save();
114
115			// $data = writeCSV(storage_path('app'.DIRECTORY_SEPARATOR.'dna'.DIRECTORY_SEPARATOR.'output'.DIRECTORY_SEPARATOR.$dm->file2), $data);
116			}
117			}
118			}
119

laravel-liberu / genealogy

DnaMatching::handle() A last analyzed 2023-10-09 08:54 UTC

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DnaMatching::handle() A
last analyzed 2023-10-09 08:54 UTC