App\Jobs\DnaMatching

Complexity

Total Complexity

4

Size/Duplication

Total Lines	76
Duplicated Lines	0 %

Importance

Changes	7
Bugs	2	Features	0

2 Methods

Rating	Name	Duplication	Size	Complexity
A	__construct()	0	2	1
A	handle()	0	55	3

<?php

namespace App\Jobs;

use App\Models\Dna;
use App\Models\DnaMatching as DM;
use App\Models\User;
use Illuminate\Bus\Queueable;
use Illuminate\Contracts\Queue\ShouldQueue;
use Illuminate\Foundation\Bus\Dispatchable;
use Illuminate\Queue\InteractsWithQueue;
use Illuminate\Queue\SerializesModels;
use Illuminate\Support\Facades\Log;

class DnaMatching implements ShouldQueue
{
    use Dispatchable, InteractsWithQueue, Queueable, SerializesModels;

The trait Illuminate\Queue\SerializesModels requires some properties which are not provided by App\Jobs\DnaMatching: $collectionClass, $id, $relations, $class, $keyBy

    public int $timeout = 0;
    public int $tries = 1;

    /**
     * Create a new job instance.
     *
     * @return void
     */
    public function __construct(protected $current_user, protected $var_name, protected $file_name)
    {
    }

    /**
     * Execute the job.
     *
     * @return void
     */
    public function handle()
    {
        $user = $this->current_user;
        $dnas = Dna::where('variable_name', '!=', $this->var_name)->get();
        $mpath = app_path();

        foreach ($dnas as $dna) {
            Log::info(json_encode($dna, JSON_THROW_ON_ERROR));
            Log::info(storage_path('/app/public/dna/output/shared_dna_'.$this->var_name.'_'.$dna->variable_name.'_'.$this->file_name.'_'.$dna->file_name));
            //            system('/usr/bin/python3 /home/genealogia/public_html/dna.py ' . $this->var_name . ' ' . $dna->variable_name . ' ' . '/home/genealogia/public_html/storage/app/dna/'. $this->file_name . ' ' . '/home/genealogia/public_html/storage/app/dna/'. $dna->file_name);
            // chdir('/home/familytree365/domains/api.familytree365.com/genealogy/app');
            chdir($mpath);
            // exec('python dna.py '.$this->var_name.' '.$dna->variable_name.' '.$this->file_name.' '.$dna->file_name, $dna_output);
            $result = exec('python3 dna.py '.$this->var_name.' '.$dna->variable_name.' '.$this->file_name.' '.$dna->file_name);
//            $resultData = json_decode($result, true, 512, JSON_THROW_ON_ERROR);
            $resultData = json_decode($result, true, 512, JSON_THROW_ON_ERROR);
            // chmod(storage_path('/app/public/dna/output/shared_dna_'.$this->var_name.'_'.$dna->variable_name.'_'.$this->file_name.'_'.$dna->file_name), 0777);

            $dm = new DM();
            $dm->user_id = $user->id;
            $dm->match_id = $dna->user_id;
            $match_name_user = User::with('person')->find($dna->user_id);
            $match_name = $match_name_user->person->name;

The property person does not exist on App\Models\User. Did you mean person_id?

            $dm->match_name = $match_name;
            // $dm->image = 'shared_dna_'.$this->var_name.'_'.$dna->variable_name.'.png';
            // $dm->image = 'shared_dna_'.$this->var_name.'_'.$dna->variable_name.'_0p75cM_1100snps_GRCh37_HapMap2.png';
            $dm->image = env('APP_URL').'/storage/dna/output/shared_dna_'.$this->var_name.'_'.
                    $dna->variable_name.'_0p75cM_1100snps_GRCh37_HapMap2.png';
            // $dm->file1 = 'discordant_snps_'.$this->var_name.'_'.$dna->variable_name.'_GRCh37.csv';
            $dm->file1 = 'discordant_snps_'.$this->var_name.'_'.$dna->variable_name.'_GRCh37.csv';
            // $dm->file2 = 'shared_dna_one_chrom_'.$this->var_name.'_'.$dna->variable_name.'_GRCh37.csv';
            $dm->file2 = 'shared_dna_one_chrom_'.$this->var_name.'_'.$dna->variable_name.'_0p75cM_1100snps_GRCh37_HapMap2.csv';

            $dm->total_shared_cm = round($resultData['total_cms'], 2);
            $dm->largest_cm_segment = round($resultData['largest_cm'], 2);

            $dm->save();
            if ($dna->user_id !== $user->id) {
                $dm2 = new DM();
                $dm2->user_id = $dna->user_id;
                $dm2->match_id = $user->id;
                $match_name_user = User::with('person')->find($dna->user_id);
                $dm2->match_name = $match_name_user->person->name;
                // $dm->image = 'shared_dna_'.$this->var_name.'_'.$dna->variable_name.'.png';
                // $dm->image = 'shared_dna_'.$this->var_name.'_'.$dna->variable_name.'_0p75cM_1100snps_GRCh37_HapMap2.png';
                $dm2->image = env('APP_URL').'/storage/dna/output/shared_dna_'.$this->var_name.'_'.$dna->variable_name.'_0p75cM_1100snps_GRCh37_HapMap2.png';
                // $dm->file1 = 'discordant_snps_'.$this->var_name.'_'.$dna->variable_name.'_GRCh37.csv';
                $dm2->file1 = 'discordant_snps_'.$this->var_name.'_'.$dna->variable_name.'_GRCh37.csv';
                // $dm->file2 = 'shared_dna_one_chrom_'.$this->var_name.'_'.$dna->variable_name.'_GRCh37.csv';
                $dm2->file2 = 'shared_dna_one_chrom_'.$this->var_name.'_'.$dna->variable_name.'_0p75cM_1100snps_GRCh37_HapMap2.csv';

                $dm2->total_shared_cm = round($resultData['total_cms'], 2);
                $dm2->largest_cm_segment = round($resultData['largest_cm'], 2);

                $dm2->save();
            }
            // $data = readCSV(storage_path('app'.DIRECTORY_SEPARATOR.'dna'.DIRECTORY_SEPARATOR.'output'.DIRECTORY_SEPARATOR.$dm->file1), ',');
            // array_shift($data);
            // $data = writeCSV(storage_path('app'.DIRECTORY_SEPARATOR.'dna'.DIRECTORY_SEPARATOR.'output'.DIRECTORY_SEPARATOR.$dm->file1), $data);

            // $data = readCSV(storage_path('app'.DIRECTORY_SEPARATOR.'dna'.DIRECTORY_SEPARATOR.'output'.DIRECTORY_SEPARATOR.$dm->file2), ',');
            // array_shift($data);

            // $temp_data = $data;
            // array_shift($temp_data);
            // array_shift($temp_data);
            // $total_cms = 0;
            // $largest_cm = 0;
            // foreach ($temp_data as $line) {
            //     if ($line[4] >= $largest_cm) {
            //         $largest_cm = $line[4];
            //     }
            //     $total_cms = $total_cms + $line[4];
            // }
            // $dm->user_id = $user->id;
            // $dm->total_shared_cm = $total_cms;
            // $dm->largest_cm_segment = round($largest_cm, 2);
            // $dm->save();

            // $data = writeCSV(storage_path('app'.DIRECTORY_SEPARATOR.'dna'.DIRECTORY_SEPARATOR.'output'.DIRECTORY_SEPARATOR.$dm->file2), $data);
        }
    }
}