mandos.search.pubchem.disease_search

Complexity

Total Complexity

2

Size/Duplication

Total Lines	43
Duplicated Lines	0 %

Importance

Changes

0

2 Methods

Rating	Name	Duplication	Size	Complexity
A	DiseaseSearch.find()	0	18	1
A	DiseaseSearch.data_source()	0	3	1

import abc

Missing module docstring

The import abc seems to be unused.

from dataclasses import dataclass
from typing import Sequence

from mandos.model.pubchem_api import PubchemApi

Unused PubchemApi imported from mandos.model.pubchem_api

from mandos.search.pubchem import PubchemHit, PubchemSearch


@dataclass(frozen=True, order=True, repr=True)

Missing class docstring

class DiseaseHit(PubchemHit):
    evidence_type: str


class DiseaseSearch(PubchemSearch[DiseaseHit]):

Empty class docstring

    """"""

    @property
    def data_source(self) -> str:

Missing function or method docstring

        return "Comparative Toxicogenomics Database (CTD)"

    def find(self, inchikey: str) -> Sequence[DiseaseHit]:

Missing function or method docstring

        data = self.api.fetch_data(inchikey)
        return [
            DiseaseHit(
                record_id=dd.gid,
                origin_inchikey=inchikey,
                matched_inchikey=data.names_and_identifiers.inchikey,
                compound_id=str(data.cid),
                compound_name=data.name,
                predicate=f"has {dd.evidence_type} evidence for",
                object_id=dd.disease_id,
                object_name=dd.disease_name,
                evidence_type=dd.evidence_type,
                search_key=self.key,
                search_class=self.search_class,
                data_source=self.data_source,
            )
            for dd in data.associated_disorders_and_diseases.associated_disorders_and_diseases
        ]


__all__ = ["DiseaseHit", "DiseaseSearch"]