mandos.search.pubchem.disease_search.DiseaseSearch.find() - Code Metrics - Inspection of "Bump flake8-bugbear from 20.11.1 to 21.3.2" - dmyersturnbull/mandos - Measure and Improve Code Quality continuously with Scrutinizer

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Push — dependabot/pip/flake8-bugbear-... ( 16d864...b4f9fc )

unknown

created 2021-03-31 03:48 UTC

DiseaseSearch.find() A

↳ Parent: mandos.search.pubchem.disease_search

Complexity

Conditions

Size

Total Lines	18
Code Lines	17

Duplication

Lines	0
Ratio	0 %

Importance

Changes

Metric	Value
cc	1
eloc	17
nop	2
dl	0
loc	18
rs	9.55
c	0
b	0
f	0

import abc

from dataclasses import dataclass
from typing import Sequence

from mandos.model.pubchem_api import PubchemApi

from mandos.search.pubchem import PubchemHit, PubchemSearch


@dataclass(frozen=True, order=True, repr=True)

class DiseaseHit(PubchemHit):
    evidence_type: str


class DiseaseSearch(PubchemSearch[DiseaseHit]):

    """"""

    @property
    def data_source(self) -> str:

        return "Comparative Toxicogenomics Database (CTD)"

    def find(self, inchikey: str) -> Sequence[DiseaseHit]:

        data = self.api.fetch_data(inchikey)
        return [
            DiseaseHit(
                record_id=dd.gid,
                origin_inchikey=inchikey,
                matched_inchikey=data.names_and_identifiers.inchikey,
                compound_id=str(data.cid),
                compound_name=data.name,
                predicate=f"has {dd.evidence_type} evidence for",
                object_id=dd.disease_id,
                object_name=dd.disease_name,
                evidence_type=dd.evidence_type,
                search_key=self.key,
                search_class=self.search_class,
                data_source=self.data_source,
            )
            for dd in data.associated_disorders_and_diseases.associated_disorders_and_diseases
        ]


__all__ = ["DiseaseHit", "DiseaseSearch"]


1			import abc
			0 ignored issues – show introduced 2021-03-10 02:41 UTC by Report Bug Copy Issue Report Missing module docstring Loading history... Unused Code introduced 2021-03-21 02:08 UTC by Report Bug Copy Issue Report The import `abc` seems to be unused. Loading history...
2			from dataclasses import dataclass
3			from typing import Sequence
4
5			from mandos.model.pubchem_api import PubchemApi
			0 ignored issues – show Unused Code introduced 2021-03-24 04:52 UTC by Report Bug Copy Issue Report Unused PubchemApi imported from mandos.model.pubchem_api Loading history...
6			from mandos.search.pubchem import PubchemHit, PubchemSearch
7
8
9			@dataclass(frozen=True, order=True, repr=True)
			0 ignored issues – show introduced 2021-01-25 23:06 UTC by Report Bug Copy Issue Report Missing class docstring Loading history...
10			class DiseaseHit(PubchemHit):
11			evidence_type: str
12
13
14			class DiseaseSearch(PubchemSearch[DiseaseHit]):
			0 ignored issues – show Documentation introduced 2021-03-10 02:41 UTC by Report Bug Copy Issue Report Empty class docstring Loading history...
15			""""""
16
17			@property
18			def data_source(self) -> str:
			0 ignored issues – show introduced 2021-03-10 02:41 UTC by Report Bug Copy Issue Report Missing function or method docstring Loading history...
19			return "Comparative Toxicogenomics Database (CTD)"
20
21			def find(self, inchikey: str) -> Sequence[DiseaseHit]:
			0 ignored issues – show introduced 2021-03-21 02:08 UTC by Report Bug Copy Issue Report Missing function or method docstring Loading history...
22			data = self.api.fetch_data(inchikey)
23			return [
24			DiseaseHit(
25			record_id=dd.gid,
26			origin_inchikey=inchikey,
27			matched_inchikey=data.names_and_identifiers.inchikey,
28			compound_id=str(data.cid),
29			compound_name=data.name,
30			predicate=f"has {dd.evidence_type} evidence for",
31			object_id=dd.disease_id,
32			object_name=dd.disease_name,
33			evidence_type=dd.evidence_type,
34			search_key=self.key,
35			search_class=self.search_class,
36			data_source=self.data_source,
37			)
38			for dd in data.associated_disorders_and_diseases.associated_disorders_and_diseases
39			]
40
41
42			__all__ = ["DiseaseHit", "DiseaseSearch"]
43

dmyersturnbull / mandos

Push — dependabot/pip/flake8-bugbear-... ( 16d864...b4f9fc )

DiseaseSearch.find() A

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