for testing and deploying your application
for finding and fixing issues
for empowering human code reviews
import abc
abc
from dataclasses import dataclass
from typing import Sequence
from mandos.model.pubchem_api import PubchemApi
from mandos.search.pubchem import PubchemHit, PubchemSearch
@dataclass(frozen=True, order=True, repr=True)
class DiseaseHit(PubchemHit):
evidence_type: str
class DiseaseSearch(PubchemSearch[DiseaseHit]):
""""""
@property
def data_source(self) -> str:
return "Comparative Toxicogenomics Database (CTD)"
def find(self, inchikey: str) -> Sequence[DiseaseHit]:
data = self.api.fetch_data(inchikey)
return [
DiseaseHit(
record_id=dd.gid,
origin_inchikey=inchikey,
matched_inchikey=data.names_and_identifiers.inchikey,
compound_id=str(data.cid),
compound_name=data.name,
predicate=f"has {dd.evidence_type} evidence for",
object_id=dd.disease_id,
object_name=dd.disease_name,
evidence_type=dd.evidence_type,
search_key=self.key,
search_class=self.search_class,
data_source=self.data_source,
)
for dd in data.associated_disorders_and_diseases.associated_disorders_and_diseases
]
__all__ = ["DiseaseHit", "DiseaseSearch"]
dmyersturnbull /
mandos
Loading history...