mandos.entry.api_singletons

Complexity

Total Complexity

10

Size/Duplication

Total Lines	93
Duplicated Lines	0 %

Importance

Changes

0

3 Methods

Rating	Name	Duplication	Size	Complexity
A	Apis.set()	0	19	1
A	Apis.describe()	0	8	2
B	Apis.set_default()	0	27	7

import inspect

Missing module docstring

import decorateme

Unable to import 'decorateme'

from mandos.model.apis.caching_pubchem_api import CachingPubchemApi
from mandos.model.apis.chembl_api import ChemblApi
from mandos.model.apis.chembl_scrape_api import (
    CachingChemblScrapeApi,
    ChemblScrapeApi,
    QueryingChemblScrapeApi,
)
from mandos.model.apis.g2p_api import CachingG2pApi, G2pApi
from mandos.model.apis.hmdb_api import CachingHmdbApi, HmdbApi, QueryingHmdbApi
from mandos.model.apis.pubchem_api import PubchemApi
from mandos.model.apis.pubchem_similarity_api import (
    CachingPubchemSimilarityApi,
    QueryingPubchemSimilarityApi,
)
from mandos.model.apis.querying_pubchem_api import QueryingPubchemApi
from mandos.model.apis.similarity_api import SimilarityApi
from mandos.model.utils.setup import logger


@decorateme.auto_utils()

Missing class docstring

class Apis:

    Pubchem: PubchemApi = None
    Chembl: ChemblApi = None
    ChemblScrape: ChemblScrapeApi = None
    G2p: G2pApi = None
    Hmdb: HmdbApi = None
    Similarity: SimilarityApi = None

    @classmethod
    def set(

Missing function or method docstring

        cls,

Wrong hanging indentation before block (add 4 spaces).

        *,

Wrong hanging indentation before block (add 4 spaces).

        chembl: ChemblApi,

Wrong hanging indentation before block (add 4 spaces).

        pubchem: PubchemApi,

Wrong hanging indentation before block (add 4 spaces).

        g2p: G2pApi,

Wrong hanging indentation before block (add 4 spaces).

        hmdb: HmdbApi,

Wrong hanging indentation before block (add 4 spaces).

        chembl_scrape: ChemblScrapeApi,

Wrong hanging indentation before block (add 4 spaces).

        similarity: SimilarityApi,

Wrong hanging indentation before block (add 4 spaces).

    ) -> None:
        cls.Chembl = chembl
        cls.Pubchem = pubchem
        cls.G2p = g2p
        cls.Hmdb = hmdb
        cls.ChemblScrape = chembl_scrape
        cls.Similarity = similarity
        logger.debug("Set custom API singletons")
        cls.describe()

    @classmethod
    def set_default(

Missing function or method docstring

        cls,

Wrong hanging indentation before block (add 4 spaces).

        *,

Wrong hanging indentation before block (add 4 spaces).

        pubchem: bool = True,

Wrong hanging indentation before block (add 4 spaces).

        chembl: bool = True,

Wrong hanging indentation before block (add 4 spaces).

        hmdb: bool = True,

Wrong hanging indentation before block (add 4 spaces).

        g2p: bool = True,

Wrong hanging indentation before block (add 4 spaces).

        scrape: bool = True,

Wrong hanging indentation before block (add 4 spaces).

        similarity: bool = True,

Wrong hanging indentation before block (add 4 spaces).

    ) -> None:
        if chembl:
            from chembl_webresource_client.new_client import new_client as _Chembl

Unable to import 'chembl_webresource_client.new_client'

Import outside toplevel (chembl_webresource_client.new_client.new_client)

            cls.Chembl = ChemblApi.wrap(_Chembl)
        if pubchem:
            cls.Pubchem = CachingPubchemApi(QueryingPubchemApi())
        if hmdb:
            cls.Hmdb = CachingHmdbApi(QueryingHmdbApi())
        if g2p:
            cls.G2p = CachingG2pApi()
        if scrape:
            cls.ChemblScrape = CachingChemblScrapeApi(QueryingChemblScrapeApi())
        if similarity:
            cls.Similarity = CachingPubchemSimilarityApi(QueryingPubchemSimilarityApi())
        logger.debug("Set default singletons")
        cls.describe()

    @classmethod
    def describe(cls) -> None:

Missing function or method docstring

        for v in [

Variable name "v" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,|_[^\\WA-Z]*|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern)

            f"    {m} = {getattr(cls, m)}"

Wrong hanging indentation before block (add 4 spaces).

            for m in dir(cls)

Wrong hanging indentation before block (add 4 spaces).

            if m[0].isupper() and not inspect.ismethod(m)

Wrong hanging indentation before block (add 4 spaces).

        ]:
            logger.debug(v)


__all__ = ["Apis"]