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import inspect |
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import decorateme |
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from mandos.model.apis.caching_pubchem_api import CachingPubchemApi |
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from mandos.model.apis.chembl_api import ChemblApi |
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from mandos.model.apis.chembl_scrape_api import ( |
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CachingChemblScrapeApi, |
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ChemblScrapeApi, |
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QueryingChemblScrapeApi, |
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) |
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from mandos.model.apis.g2p_api import CachingG2pApi, G2pApi |
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from mandos.model.apis.hmdb_api import CachingHmdbApi, HmdbApi, QueryingHmdbApi |
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from mandos.model.apis.pubchem_api import PubchemApi |
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from mandos.model.apis.pubchem_similarity_api import ( |
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CachingPubchemSimilarityApi, |
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QueryingPubchemSimilarityApi, |
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) |
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from mandos.model.apis.querying_pubchem_api import QueryingPubchemApi |
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from mandos.model.apis.similarity_api import SimilarityApi |
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from mandos.model.utils.setup import logger |
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@decorateme.auto_utils() |
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class Apis: |
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Pubchem: PubchemApi = None |
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Chembl: ChemblApi = None |
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ChemblScrape: ChemblScrapeApi = None |
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G2p: G2pApi = None |
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Hmdb: HmdbApi = None |
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Similarity: SimilarityApi = None |
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@classmethod |
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def set( |
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cls, |
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*, |
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chembl: ChemblApi, |
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pubchem: PubchemApi, |
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g2p: G2pApi, |
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hmdb: HmdbApi, |
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chembl_scrape: ChemblScrapeApi, |
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similarity: SimilarityApi, |
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) -> None: |
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cls.Chembl = chembl |
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cls.Pubchem = pubchem |
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cls.G2p = g2p |
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cls.Hmdb = hmdb |
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cls.ChemblScrape = chembl_scrape |
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cls.Similarity = similarity |
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logger.debug("Set custom API singletons") |
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cls.describe() |
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@classmethod |
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def set_default( |
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cls, |
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*, |
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pubchem: bool = True, |
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chembl: bool = True, |
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hmdb: bool = True, |
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g2p: bool = True, |
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scrape: bool = True, |
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similarity: bool = True, |
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) -> None: |
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if chembl: |
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from chembl_webresource_client.new_client import new_client as _Chembl |
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cls.Chembl = ChemblApi.wrap(_Chembl) |
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if pubchem: |
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cls.Pubchem = CachingPubchemApi(QueryingPubchemApi()) |
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if hmdb: |
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cls.Hmdb = CachingHmdbApi(QueryingHmdbApi()) |
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if g2p: |
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cls.G2p = CachingG2pApi() |
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if scrape: |
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cls.ChemblScrape = CachingChemblScrapeApi(QueryingChemblScrapeApi()) |
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if similarity: |
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cls.Similarity = CachingPubchemSimilarityApi(QueryingPubchemSimilarityApi()) |
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logger.debug("Set default singletons") |
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cls.describe() |
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@classmethod |
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def describe(cls) -> None: |
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for v in [ |
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f" {m} = {getattr(cls, m)}" |
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for m in dir(cls) |
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if m[0].isupper() and not inspect.ismethod(m) |
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]: |
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logger.debug(v) |
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__all__ = ["Apis"] |
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dmyersturnbull /
mandos
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