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tests.search.test_mechanism_search   A
last analyzed

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Complexity

Total Complexity 1

Size/Duplication

Total Lines 22
Duplicated Lines 0 %

Importance

Changes 0
Metric Value
eloc 15
dl 0
loc 22
rs 10
c 0
b 0
f 0
wmc 1

1 Method

Rating   Name   Duplication   Size   Complexity  
A TestMechanismSearch.test_find() 0 9 1
1 
import pytest
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from mandos.cli import Commands, What

            


            
                                                        
            
                                    
            
            

                
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from . import get_test_resource

            


            
                                                        
            
                                    
            
            

                
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class TestMechanismSearch:

            


                            

                    
                        
                    
                    
                    
                    
                                                                                                    
                        

                            
                            
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    def test_find(self):

            


                            

                    
                        
                    
                    
                    
                    
                                                                                                                                                        
                        

                            
                            
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This method could be written as a function/class method.
                                            

                    
                                            

                            

                            

                                
                                    
                                
                            


                            
If a method does not access any attributes of the class, it could also be
implemented as a function or static method. This can help improve readability.
For example


class Foo:
    def some_method(self, x, y):
        return x + y;





could be written as


class Foo:
    @classmethod
    def some_method(cls, x, y):
        return x + y;





                        

                                                    

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        df, triples = Commands.search_for(What.mechanism, get_test_resource("inchis.txt"), None)

            


                            

                    
                        
                    
                    
                    
                    
                                                                                                    
                        

                            
                            
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Variable name "df" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,|_[^\\WA-Z]*|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern)
                                            

                    
                                            

                            

                            

                                
                                    
                                
                            


                            
This check looks for invalid names for a range of different identifiers.


You can set regular expressions to which the identifiers must conform if the
defaults do not match your requirements.


If your project includes a Pylint configuration file, the settings contained in
that file take precedence.


To find out more about Pylint, please refer to their site.


                        

                                                    

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        assert len(df) == 1

            


            
                                                        
            
                                    
            
            

                
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        assert len(triples) == 1

            


            
                                                        
            
                                    
            
            

                
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        assert triples[0].compound_name.lower() == "alprazolam"

            


            
                                                        
            
                                    
            
            

                
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        # CHEMBL2109244 is GABA-A receptor; agonist GABA site

            


            
                                                        
            
                                    
            
            

                
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        assert triples[0].compound_id == "CHEMBL661"

            


            
                                                        
            
                                    
            
            

                
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        assert triples[0].object_id == "CHEMBL2093872"

            


            
                                                        
            
                                    
            
            

                
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        assert triples[0].predicate == "positive allosteric modulator"

            


            
                                                        
            
                                    
            
            

                
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if __name__ == "__main__":

            


            
                                                        
            
                                    
            
            

                
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    pytest.main()

            


            
                                                        
            
                                    
            
            

                
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