tests.search.test_mechanism_search.TestMechanismSearch.test_find() - Code Metrics - dmyersturnbull/mandos - Measure and Improve Code Quality continuously with Scrutinizer

TestMechanismSearch.test_find() A
last analyzed 2021-01-25 23:07 UTC

↳ Parent: tests.search.test_mechanism_search

Complexity

Conditions

Size

Total Lines	9
Code Lines	8

Duplication

Lines	0
Ratio	0 %

Importance

Changes

Metric	Value
cc	1
eloc	8
nop	1
dl	0
loc	9
rs	10
c	0
b	0
f	0

import pytest


from mandos.cli import Commands, What

from . import get_test_resource


class TestMechanismSearch:

    def test_find(self):
class Foo:
    def some_method(self, x, y):
        return x + y;
        df, triples = Commands.search_for(What.mechanism, get_test_resource("inchis.txt"), None)

        assert len(df) == 1
        assert len(triples) == 1
        assert triples[0].compound_name.lower() == "alprazolam"
        # CHEMBL2109244 is GABA-A receptor; agonist GABA site
        assert triples[0].compound_id == "CHEMBL661"
        assert triples[0].object_id == "CHEMBL2093872"
        assert triples[0].predicate == "positive allosteric modulator"


if __name__ == "__main__":
    pytest.main()


1			import pytest
			0 ignored issues – show introduced 2021-01-25 23:06 UTC by Report Bug Copy Issue Report Missing module docstring Loading history... introduced 2021-01-25 23:06 UTC by Report Bug Copy Issue Report Unable to import 'pytest' Loading history...
2
3			from mandos.cli import Commands, What
4
5			from . import get_test_resource
6
7
8			class TestMechanismSearch:
			0 ignored issues – show introduced 2021-01-25 23:06 UTC by Report Bug Copy Issue Report Missing class docstring Loading history...
9			def test_find(self):
			0 ignored issues – show introduced 2021-01-25 23:06 UTC by Report Bug Copy Issue Report Missing function or method docstring Loading history... Coding Style introduced 2021-01-25 23:06 UTC by Report Bug Copy Issue Report This method could be written as a function/class method. If a method does not access any attributes of the class, it could also be implemented as a function or static method. This can help improve readability. For example class Foo: def some_method(self, x, y): return x + y; could be written as class Foo: @classmethod def some_method(cls, x, y): return x + y; Loading history...
10			df, triples = Commands.search_for(What.mechanism, get_test_resource("inchis.txt"), None)
			0 ignored issues – show Coding Style Naming introduced 2021-01-25 23:06 UTC by Report Bug Copy Issue Report Variable name "df" doesn't conform to snake_case naming style ('([^\\W\\dA-Z][^\\WA-Z]2,\|_[^\\WA-Z]*\|__[^\\WA-Z\\d_][^\\WA-Z]+__)$' pattern) This check looks for invalid names for a range of different identifiers. You can set regular expressions to which the identifiers must conform if the defaults do not match your requirements. If your project includes a Pylint configuration file, the settings contained in that file take precedence. To find out more about Pylint, please refer to their site. Loading history...
11			assert len(df) == 1
12			assert len(triples) == 1
13			assert triples[0].compound_name.lower() == "alprazolam"
14			# CHEMBL2109244 is GABA-A receptor; agonist GABA site
15			assert triples[0].compound_id == "CHEMBL661"
16			assert triples[0].object_id == "CHEMBL2093872"
17			assert triples[0].predicate == "positive allosteric modulator"
18
19
20			if __name__ == "__main__":
21			pytest.main()
22

dmyersturnbull / mandos

TestMechanismSearch.test_find() A last analyzed 2021-01-25 23:07 UTC

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TestMechanismSearch.test_find() A
last analyzed 2021-01-25 23:07 UTC