SDA.__init__() - Code Metrics - TinghuiWang/pyActLearn - Measure and Improve Code Quality continuously with Scrutinizer

SDA.init() C
last analyzed 2018-03-13 15:38 UTC

↳ Parent: SDA

Complexity

Conditions

Size

Total Lines

Duplication

Lines	37
Ratio	53.62 %

Importance

Changes	1
Bugs	0	Features	0

Metric	Value
cc	8
c	1
b	0
f	0
dl	37
loc	69
rs	5.2436

How to fix Long Method

import logging
import numpy as np
import tensorflow as tf
from .layers import AutoencoderLayer, HiddenLayer, SoftmaxLayer
from .injectors import BatchInjector
from .criterion import MonitorBased, ConstIterations

logger = logging.getLogger(__name__)


class SDA:
    """Stacked Auto-encoder

    Args:
        num_features (:obj:`int`): Number of features.
        num_classes (:obj:`int`): Number of classes.
        layers (:obj:`list` of :obj:`int`): Series of hidden auto-encoder layers.
        encode_optimizer: Optimizer used for auto-encoding process.
        tuning_optimizer: Optimizer used for fine tuning.

    Attributes:
        num_features (:obj:`int`): Number of features.
        num_classes (:obj:`int`): Number of classes.
        x (:obj:`tensorflow.placeholder`): Input placeholder.
        y_ (:obj:`tensorflow.placeholder`): Output placeholder.
        inner_layers (:obj:`list`): List of auto-encoder hidden layers.

    """
    def __init__(self, num_features, num_classes, layers, encode_optimizer=None, tuning_optimizer=None):
        self.num_features = num_features
        self.num_classes = num_classes
        with tf.name_scope('input'):
            self.x = tf.placeholder(tf.float32, shape=[None, num_features], name='input_x')
            self.y_ = tf.placeholder(tf.float32, shape=[None, num_classes], name='input_y')
        self.inner_layers = []
        self.summaries = []
        self.encode_opts = []
        if encode_optimizer is None:
            self.encode_optimizer = tf.train.AdamOptimizer()
        else:
            self.encode_optimizer = encode_optimizer
        if tuning_optimizer is None:
            self.tuning_optimizer = tf.train.AdamOptimizer()
        else:
            self.tuning_optimizer = tuning_optimizer
        # Create Layers
        for i in range(len(layers)):
            if i == 0:

                # First Layer
                self.inner_layers.append(
                    AutoencoderLayer(num_features, layers[i], x=self.x, name=('Hidden%d' % i))
                )
            else:
                # inner Layer
                self.inner_layers.append(
                    AutoencoderLayer(layers[i-1], layers[i], x=self.inner_layers[i-1].y, name=('Hidden%d' % i))
                )
            self.summaries += self.inner_layers[i].summaries
            self.encode_opts.append(
                self.encode_optimizer.minimize(self.inner_layers[i].encode_loss,
                                               var_list=self.inner_layers[i].variables)
            )
        if num_classes == 1:

            # Output Layers
            self.output_layer = HiddenLayer(layers[len(layers) - 1], num_classes, x=self.inner_layers[len(layers)-1].y,
                                            name='Output', activation_fn=tf.sigmoid)
            # Predicted Probability
            self.y = self.output_layer.y
            self.y_class = tf.cast(tf.greater_equal(self.y, 0.5), tf.float32)
            # Loss
            self.loss = tf.reduce_mean(
                tf.nn.sigmoid_cross_entropy_with_logits(self.output_layer.logits, self.y_,
                                                        name='SigmoidCrossEntropyLoss')
            )
            self.correct_prediction = tf.equal(self.y_class, self.y_)
            self.accuracy = tf.reduce_mean(tf.cast(self.correct_prediction, tf.float32))
        else:
            # Output Layers
            self.output_layer = SoftmaxLayer(layers[len(layers) - 1], num_classes, x=self.inner_layers[len(layers)-1].y,
                                             name='OutputLayer')
            # Predicted Probability
            self.y = self.output_layer.y
            self.y_class = tf.argmax(self.y, 1)
            # Loss
            self.loss = tf.reduce_mean(
                tf.nn.softmax_cross_entropy_with_logits(logits=self.output_layer.logits, labels=self.y_,
                                                        name='SoftmaxCrossEntropyLoss')
            )
            self.correct_prediction = tf.equal(self.y_class, tf.argmax(self.y_, 1))
            self.accuracy = tf.reduce_mean(tf.cast(self.correct_prediction, tf.float32))
        self.summaries.append(tf.summary.scalar('cross_entropy', self.loss))
        self.summaries.append(tf.summary.scalar('accuracy', self.accuracy))
        self.summaries += self.output_layer.summaries
        with tf.name_scope('train'):
            self.fine_tuning = self.tuning_optimizer.minimize(self.loss)
        self.merged = tf.summary.merge(self.summaries)
        self.sess = None

    def fit(self, x, y, batch_size=100,
            pretrain_iter_num=100, pretrain_criterion='const_iterations',
            tuning_iter_num=100, tuning_criterion='const_iterations',
            summaries_dir=None, test_x=None, test_y=None, summary_interval=10,
            session=None):
        """Fit the model to the dataset

        Args:
            x (:obj:`numpy.ndarray`): Input features of shape (num_samples, num_features).
            y (:obj:`numpy.ndarray`): Corresponding Labels of shape (num_samples) for binary classification,
                or (num_samples, num_classes) for multi-class classification.
            batch_size (:obj:`int`): Batch size used in gradient descent.
            pretrain_iter_num (:obj:`int`): Number of const iterations or search depth for monitor based stopping
                criterion in pre-training stage
            pretrain_criterion (:obj:`str`): Stopping criteria in pre-training stage ('const_iterations' or
                'monitor_based')
            tuning_iter_num (:obj:`int`): Number of const iterations or search depth for monitor based stopping
                criterion in fine-tuning stage
            tuning_criterion (:obj:`str`): Stopping criteria in fine-tuning stage ('const_iterations' or
                'monitor_based')
            summaries_dir (:obj:`str`): Path of the directory to store summaries and saved values.
            summary_interval (:obj:`int`): The step interval to export variable summaries.
            test_x (:obj:`numpy.ndarray`): Test feature array used for monitoring training progress.
            test_y (:obj:`numpy.ndarray): Test label array used for monitoring training progress.
            session (:obj:`tensorflow.Session`): Session to run training functions.
        """
        if session is None:
            if self.sess is None:
                session = tf.Session()
                self.sess = session
            else:
                session = self.sess
        session.run(tf.global_variables_initializer())
        # Pre-training stage: layer by layer
        for j in range(len(self.inner_layers)):
            current_layer = self.inner_layers[j]
            if summaries_dir is not None:
                layer_summaries_dir = '%s/pretrain_layer%d' % (summaries_dir, j)
                train_writer = tf.summary.FileWriter(layer_summaries_dir + '/train')
                test_writer = tf.summary.FileWriter(layer_summaries_dir + '/test')
                valid_writer = tf.summary.FileWriter(layer_summaries_dir + '/valid')
            # Get Stopping Criterion
            if pretrain_criterion == 'const_iterations':
                _pretrain_criterion = ConstIterations(num_iters=pretrain_iter_num)
                train_x = x
                train_y = y
            elif pretrain_criterion == 'monitor_based':
                num_samples = x.shape[0]
                valid_set_len = int(1 / 5 * num_samples)
                valid_x = x[num_samples - valid_set_len:num_samples, :]
                valid_y = y[num_samples - valid_set_len:num_samples, :]
                train_x = x[0:num_samples - valid_set_len, :]
                train_y = y[0:num_samples - valid_set_len, :]
                _pretrain_criterion = MonitorBased(n_steps=pretrain_iter_num,
                                                   monitor_fn=self.get_encode_loss,
                                                   monitor_fn_args=(current_layer, valid_x, valid_y),
                                                   save_fn=tf.train.Saver().save,
                                                   save_fn_args=(session, layer_summaries_dir + '/best.ckpt'))
            else:
                logger.error('Wrong criterion %s specified.' % pretrain_criterion)
                return
            injector = BatchInjector(data_x=train_x, data_y=train_y, batch_size=batch_size)
            i = 0
            while _pretrain_criterion.continue_learning():

                batch_x, batch_y = injector.next_batch()
                if summaries_dir is not None and (i % summary_interval == 0):
                    summary, loss = session.run(
                        [current_layer.merged, current_layer.encode_loss],
                        feed_dict={self.x: x, self.y_: y}
                    )
                    train_writer.add_summary(summary, i)
                    logger.info('Pre-training Layer %d, Step %d, training loss %g' % (j, i, loss))
                    if test_x is not None and test_y is not None:
                        summary, loss = session.run(
                            [current_layer.merged, current_layer.encode_loss],
                            feed_dict={self.x: test_x, self.y_: test_y}
                        )
                        test_writer.add_summary(summary, i)
                        logger.info('Pre-training Layer %d, Step %d, test loss %g' % (j, i, loss))
                    if pretrain_criterion == 'monitor_based':
                        summary, loss = session.run(
                            [current_layer.merged, current_layer.encode_loss],
                            feed_dict={self.x: valid_x, self.y_: valid_y}
                        )
                        valid_writer.add_summary(summary, i)
                        logger.info('Pre-training Layer %d, Step %d, valid loss %g' % (j, i, loss))
                _ = session.run(self.encode_opts[j], feed_dict={self.x: batch_x, self.y_: batch_y})
                i += 1
            if pretrain_criterion == 'monitor_based':
                tf.train.Saver().restore(session, layer_summaries_dir + '/best.ckpt')
            if summaries_dir is not None:
                train_writer.close()
                test_writer.close()
                valid_writer.close()
        # Finish all internal layer-by-layer pre-training
        # Start fine tuning
        if summaries_dir is not None:
            tuning_summaries_dir = '%s/fine_tuning' % summaries_dir
            train_writer = tf.summary.FileWriter(tuning_summaries_dir + '/train')
            test_writer = tf.summary.FileWriter(tuning_summaries_dir + '/test')
            valid_writer = tf.summary.FileWriter(tuning_summaries_dir + '/valid')
        # Setup Stopping Criterion
        if tuning_criterion == 'const_iterations':
            _tuning_criterion = ConstIterations(num_iters=pretrain_iter_num)
            train_x = x
            train_y = y
        elif tuning_criterion == 'monitor_based':
            num_samples = x.shape[0]
            valid_set_len = int(1 / 5 * num_samples)
            valid_x = x[num_samples - valid_set_len:num_samples, :]
            valid_y = y[num_samples - valid_set_len:num_samples, :]
            train_x = x[0:num_samples - valid_set_len, :]
            train_y = y[0:num_samples - valid_set_len, :]
            _tuning_criterion = MonitorBased(n_steps=pretrain_iter_num,
                                             monitor_fn=self.predict_accuracy,
                                             monitor_fn_args=(valid_x, valid_y),
                                             save_fn=tf.train.Saver().save,
                                             save_fn_args=(session, tuning_summaries_dir + '/best.ckpt'))
        else:
            logger.error('Wrong criterion %s specified.' % pretrain_criterion)
            return
        injector = BatchInjector(data_x=train_x, data_y=train_y, batch_size=batch_size)
        i = 0
        while _tuning_criterion.continue_learning():

            batch_x, batch_y = injector.next_batch()
            if summaries_dir is not None and (i % summary_interval == 0):
                summary, loss, accuracy = session.run([self.merged, self.loss, self.accuracy],
                                                      feed_dict={self.x: train_x, self.y_: train_y})
                train_writer.add_summary(summary, i)
                logger.info('Fine-Tuning: Step %d, training accuracy %g, loss %g' % (i, accuracy, loss))
                if (test_x is not None) and (test_y is not None):
                    merged, accuracy = session.run([self.merged, self.accuracy],
                                                   feed_dict={self.x: test_x, self.y_: test_y})
                    test_writer.add_summary(merged, i)
                    logger.info('Fine-Tuning: Step %d, test accuracy %g' % (i, accuracy))
                if tuning_criterion == 'monitor_based':
                    merged, accuracy = session.run([self.merged, self.accuracy],
                                                   feed_dict={self.x: valid_x, self.y_: valid_y})
                    valid_writer.add_summary(merged, i)
                    logger.info('Fine-Tuning: Step %d, valid accuracy %g' % (i, accuracy))
            _ = session.run(self.fine_tuning, feed_dict={self.x: batch_x, self.y_: batch_y})
            i += 1
        if tuning_criterion == 'monitor_based':
            tf.train.Saver().restore(session, tuning_summaries_dir + '/best.ckpt')
        if summaries_dir is not None:
            train_writer.close()
            test_writer.close()
            valid_writer.close()

    def get_encode_loss(self, layer, x, y, session=None):
        """Get encoder loss of layer specified
        """
        if session is None:
            if self.sess is None:
                session = tf.Session()
                self.sess = session
            else:
                session = self.sess
        return session.run(layer.encode_loss, feed_dict={self.x: x, self.y_: y})

    def predict_accuracy(self, x, y, session=None):
        """Get Accuracy given feature array and corresponding labels
        """
        if session is None:
            if self.sess is None:
                session = tf.Session()
                self.sess = session
            else:
                session = self.sess
        return session.run(self.accuracy, feed_dict={self.x: x, self.y_: y})

    def predict_proba(self, x, session=None):
        """Predict probability (Softmax)
        """
        if session is None:
            if self.sess is None:
                session = tf.Session()
                self.sess = session
            else:
                session = self.sess
        return session.run(self.y, feed_dict={self.x: x})

    def predict(self, x, session=None):
        if session is None:
            if self.sess is None:
                session = tf.Session()
                self.sess = session
            else:
                session = self.sess
        return session.run(self.y_class, feed_dict={self.x: x})


1		import logging
2		import numpy as np
3		import tensorflow as tf
4		from .layers import AutoencoderLayer, HiddenLayer, SoftmaxLayer
5		from .injectors import BatchInjector
6		from .criterion import MonitorBased, ConstIterations
7
8		logger = logging.getLogger(__name__)
9
10
11		class SDA:
12		"""Stacked Auto-encoder
13
14		Args:
15		num_features (:obj:`int`): Number of features.
16		num_classes (:obj:`int`): Number of classes.
17		layers (:obj:`list` of :obj:`int`): Series of hidden auto-encoder layers.
18		encode_optimizer: Optimizer used for auto-encoding process.
19		tuning_optimizer: Optimizer used for fine tuning.
20
21		Attributes:
22		num_features (:obj:`int`): Number of features.
23		num_classes (:obj:`int`): Number of classes.
24		x (:obj:`tensorflow.placeholder`): Input placeholder.
25		y_ (:obj:`tensorflow.placeholder`): Output placeholder.
26		inner_layers (:obj:`list`): List of auto-encoder hidden layers.
27
28		"""
29		def __init__(self, num_features, num_classes, layers, encode_optimizer=None, tuning_optimizer=None):
30		self.num_features = num_features
31		self.num_classes = num_classes
32		with tf.name_scope('input'):
33		self.x = tf.placeholder(tf.float32, shape=[None, num_features], name='input_x')
34		self.y_ = tf.placeholder(tf.float32, shape=[None, num_classes], name='input_y')
35		self.inner_layers = []
36		self.summaries = []
37		self.encode_opts = []
38		if encode_optimizer is None:
39		self.encode_optimizer = tf.train.AdamOptimizer()
40		else:
41		self.encode_optimizer = encode_optimizer
42		if tuning_optimizer is None:
43		self.tuning_optimizer = tf.train.AdamOptimizer()
44		else:
45		self.tuning_optimizer = tuning_optimizer
46		# Create Layers
47		for i in range(len(layers)):
48	View Code Duplication	if i == 0:
		0 ignored issues – show Duplication introduced 2017-01-23 16:44 UTC by Report Bug Copy Issue Report This code seems to be duplicated in your project. Loading history...
49		# First Layer
50		self.inner_layers.append(
51		AutoencoderLayer(num_features, layers[i], x=self.x, name=('Hidden%d' % i))
52		)
53		else:
54		# inner Layer
55		self.inner_layers.append(
56		AutoencoderLayer(layers[i-1], layers[i], x=self.inner_layers[i-1].y, name=('Hidden%d' % i))
57		)
58		self.summaries += self.inner_layers[i].summaries
59		self.encode_opts.append(
60		self.encode_optimizer.minimize(self.inner_layers[i].encode_loss,
61		var_list=self.inner_layers[i].variables)
62		)
63	View Code Duplication	if num_classes == 1:
		0 ignored issues – show Duplication introduced 2017-01-23 16:44 UTC by Report Bug Copy Issue Report This code seems to be duplicated in your project. Loading history...
64		# Output Layers
65		self.output_layer = HiddenLayer(layers[len(layers) - 1], num_classes, x=self.inner_layers[len(layers)-1].y,
66		name='Output', activation_fn=tf.sigmoid)
67		# Predicted Probability
68		self.y = self.output_layer.y
69		self.y_class = tf.cast(tf.greater_equal(self.y, 0.5), tf.float32)
70		# Loss
71		self.loss = tf.reduce_mean(
72		tf.nn.sigmoid_cross_entropy_with_logits(self.output_layer.logits, self.y_,
73		name='SigmoidCrossEntropyLoss')
74		)
75		self.correct_prediction = tf.equal(self.y_class, self.y_)
76		self.accuracy = tf.reduce_mean(tf.cast(self.correct_prediction, tf.float32))
77		else:
78		# Output Layers
79		self.output_layer = SoftmaxLayer(layers[len(layers) - 1], num_classes, x=self.inner_layers[len(layers)-1].y,
80		name='OutputLayer')
81		# Predicted Probability
82		self.y = self.output_layer.y
83		self.y_class = tf.argmax(self.y, 1)
84		# Loss
85		self.loss = tf.reduce_mean(
86		tf.nn.softmax_cross_entropy_with_logits(logits=self.output_layer.logits, labels=self.y_,
87		name='SoftmaxCrossEntropyLoss')
88		)
89		self.correct_prediction = tf.equal(self.y_class, tf.argmax(self.y_, 1))
90		self.accuracy = tf.reduce_mean(tf.cast(self.correct_prediction, tf.float32))
91		self.summaries.append(tf.summary.scalar('cross_entropy', self.loss))
92		self.summaries.append(tf.summary.scalar('accuracy', self.accuracy))
93		self.summaries += self.output_layer.summaries
94		with tf.name_scope('train'):
95		self.fine_tuning = self.tuning_optimizer.minimize(self.loss)
96		self.merged = tf.summary.merge(self.summaries)
97		self.sess = None
98
99		def fit(self, x, y, batch_size=100,
100		pretrain_iter_num=100, pretrain_criterion='const_iterations',
101		tuning_iter_num=100, tuning_criterion='const_iterations',
102		summaries_dir=None, test_x=None, test_y=None, summary_interval=10,
103		session=None):
104		"""Fit the model to the dataset
105
106		Args:
107		x (:obj:`numpy.ndarray`): Input features of shape (num_samples, num_features).
108		y (:obj:`numpy.ndarray`): Corresponding Labels of shape (num_samples) for binary classification,
109		or (num_samples, num_classes) for multi-class classification.
110		batch_size (:obj:`int`): Batch size used in gradient descent.
111		pretrain_iter_num (:obj:`int`): Number of const iterations or search depth for monitor based stopping
112		criterion in pre-training stage
113		pretrain_criterion (:obj:`str`): Stopping criteria in pre-training stage ('const_iterations' or
114		'monitor_based')
115		tuning_iter_num (:obj:`int`): Number of const iterations or search depth for monitor based stopping
116		criterion in fine-tuning stage
117		tuning_criterion (:obj:`str`): Stopping criteria in fine-tuning stage ('const_iterations' or
118		'monitor_based')
119		summaries_dir (:obj:`str`): Path of the directory to store summaries and saved values.
120		summary_interval (:obj:`int`): The step interval to export variable summaries.
121		test_x (:obj:`numpy.ndarray`): Test feature array used for monitoring training progress.
122		test_y (:obj:`numpy.ndarray): Test label array used for monitoring training progress.
123		session (:obj:`tensorflow.Session`): Session to run training functions.
124		"""
125		if session is None:
126		if self.sess is None:
127		session = tf.Session()
128		self.sess = session
129		else:
130		session = self.sess
131		session.run(tf.global_variables_initializer())
132		# Pre-training stage: layer by layer
133		for j in range(len(self.inner_layers)):
134		current_layer = self.inner_layers[j]
135		if summaries_dir is not None:
136		layer_summaries_dir = '%s/pretrain_layer%d' % (summaries_dir, j)
137		train_writer = tf.summary.FileWriter(layer_summaries_dir + '/train')
138		test_writer = tf.summary.FileWriter(layer_summaries_dir + '/test')
139		valid_writer = tf.summary.FileWriter(layer_summaries_dir + '/valid')
140		# Get Stopping Criterion
141		if pretrain_criterion == 'const_iterations':
142		_pretrain_criterion = ConstIterations(num_iters=pretrain_iter_num)
143		train_x = x
144		train_y = y
145		elif pretrain_criterion == 'monitor_based':
146		num_samples = x.shape[0]
147		valid_set_len = int(1 / 5 * num_samples)
148		valid_x = x[num_samples - valid_set_len:num_samples, :]
149		valid_y = y[num_samples - valid_set_len:num_samples, :]
150		train_x = x[0:num_samples - valid_set_len, :]
151		train_y = y[0:num_samples - valid_set_len, :]
152		_pretrain_criterion = MonitorBased(n_steps=pretrain_iter_num,
153		monitor_fn=self.get_encode_loss,
154		monitor_fn_args=(current_layer, valid_x, valid_y),
155		save_fn=tf.train.Saver().save,
156		save_fn_args=(session, layer_summaries_dir + '/best.ckpt'))
157		else:
158		logger.error('Wrong criterion %s specified.' % pretrain_criterion)
159		return
160		injector = BatchInjector(data_x=train_x, data_y=train_y, batch_size=batch_size)
161		i = 0
162	View Code Duplication	while _pretrain_criterion.continue_learning():
		0 ignored issues – show Duplication introduced 2017-01-23 16:44 UTC by Report Bug Copy Issue Report This code seems to be duplicated in your project. Loading history...
163		batch_x, batch_y = injector.next_batch()
164		if summaries_dir is not None and (i % summary_interval == 0):
165		summary, loss = session.run(
166		[current_layer.merged, current_layer.encode_loss],
167		feed_dict={self.x: x, self.y_: y}
168		)
169		train_writer.add_summary(summary, i)
170		logger.info('Pre-training Layer %d, Step %d, training loss %g' % (j, i, loss))
171		if test_x is not None and test_y is not None:
172		summary, loss = session.run(
173		[current_layer.merged, current_layer.encode_loss],
174		feed_dict={self.x: test_x, self.y_: test_y}
175		)
176		test_writer.add_summary(summary, i)
177		logger.info('Pre-training Layer %d, Step %d, test loss %g' % (j, i, loss))
178		if pretrain_criterion == 'monitor_based':
179		summary, loss = session.run(
180		[current_layer.merged, current_layer.encode_loss],
181		feed_dict={self.x: valid_x, self.y_: valid_y}
182		)
183		valid_writer.add_summary(summary, i)
184		logger.info('Pre-training Layer %d, Step %d, valid loss %g' % (j, i, loss))
185		_ = session.run(self.encode_opts[j], feed_dict={self.x: batch_x, self.y_: batch_y})
186		i += 1
187		if pretrain_criterion == 'monitor_based':
188		tf.train.Saver().restore(session, layer_summaries_dir + '/best.ckpt')
189		if summaries_dir is not None:
190		train_writer.close()
191		test_writer.close()
192		valid_writer.close()
193		# Finish all internal layer-by-layer pre-training
194		# Start fine tuning
195		if summaries_dir is not None:
196		tuning_summaries_dir = '%s/fine_tuning' % summaries_dir
197		train_writer = tf.summary.FileWriter(tuning_summaries_dir + '/train')
198		test_writer = tf.summary.FileWriter(tuning_summaries_dir + '/test')
199		valid_writer = tf.summary.FileWriter(tuning_summaries_dir + '/valid')
200		# Setup Stopping Criterion
201		if tuning_criterion == 'const_iterations':
202		_tuning_criterion = ConstIterations(num_iters=pretrain_iter_num)
203		train_x = x
204		train_y = y
205		elif tuning_criterion == 'monitor_based':
206		num_samples = x.shape[0]
207		valid_set_len = int(1 / 5 * num_samples)
208		valid_x = x[num_samples - valid_set_len:num_samples, :]
209		valid_y = y[num_samples - valid_set_len:num_samples, :]
210		train_x = x[0:num_samples - valid_set_len, :]
211		train_y = y[0:num_samples - valid_set_len, :]
212		_tuning_criterion = MonitorBased(n_steps=pretrain_iter_num,
213		monitor_fn=self.predict_accuracy,
214		monitor_fn_args=(valid_x, valid_y),
215		save_fn=tf.train.Saver().save,
216		save_fn_args=(session, tuning_summaries_dir + '/best.ckpt'))
217		else:
218		logger.error('Wrong criterion %s specified.' % pretrain_criterion)
219		return
220		injector = BatchInjector(data_x=train_x, data_y=train_y, batch_size=batch_size)
221		i = 0
222	View Code Duplication	while _tuning_criterion.continue_learning():
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223		batch_x, batch_y = injector.next_batch()
224		if summaries_dir is not None and (i % summary_interval == 0):
225		summary, loss, accuracy = session.run([self.merged, self.loss, self.accuracy],
226		feed_dict={self.x: train_x, self.y_: train_y})
227		train_writer.add_summary(summary, i)
228		logger.info('Fine-Tuning: Step %d, training accuracy %g, loss %g' % (i, accuracy, loss))
229		if (test_x is not None) and (test_y is not None):
230		merged, accuracy = session.run([self.merged, self.accuracy],
231		feed_dict={self.x: test_x, self.y_: test_y})
232		test_writer.add_summary(merged, i)
233		logger.info('Fine-Tuning: Step %d, test accuracy %g' % (i, accuracy))
234		if tuning_criterion == 'monitor_based':
235		merged, accuracy = session.run([self.merged, self.accuracy],
236		feed_dict={self.x: valid_x, self.y_: valid_y})
237		valid_writer.add_summary(merged, i)
238		logger.info('Fine-Tuning: Step %d, valid accuracy %g' % (i, accuracy))
239		_ = session.run(self.fine_tuning, feed_dict={self.x: batch_x, self.y_: batch_y})
240		i += 1
241		if tuning_criterion == 'monitor_based':
242		tf.train.Saver().restore(session, tuning_summaries_dir + '/best.ckpt')
243		if summaries_dir is not None:
244		train_writer.close()
245		test_writer.close()
246		valid_writer.close()
247
248		def get_encode_loss(self, layer, x, y, session=None):
249		"""Get encoder loss of layer specified
250		"""
251		if session is None:
252		if self.sess is None:
253		session = tf.Session()
254		self.sess = session
255		else:
256		session = self.sess
257		return session.run(layer.encode_loss, feed_dict={self.x: x, self.y_: y})
258
259		def predict_accuracy(self, x, y, session=None):
260		"""Get Accuracy given feature array and corresponding labels
261		"""
262		if session is None:
263		if self.sess is None:
264		session = tf.Session()
265		self.sess = session
266		else:
267		session = self.sess
268		return session.run(self.accuracy, feed_dict={self.x: x, self.y_: y})
269
270		def predict_proba(self, x, session=None):
271		"""Predict probability (Softmax)
272		"""
273		if session is None:
274		if self.sess is None:
275		session = tf.Session()
276		self.sess = session
277		else:
278		session = self.sess
279		return session.run(self.y, feed_dict={self.x: x})
280
281		def predict(self, x, session=None):
282		if session is None:
283		if self.sess is None:
284		session = tf.Session()
285		self.sess = session
286		else:
287		session = self.sess
288		return session.run(self.y_class, feed_dict={self.x: x})
289

TinghuiWang / pyActLearn

SDA.__init__() C last analyzed 2018-03-13 15:38 UTC

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SDA.init() C
last analyzed 2018-03-13 15:38 UTC