NatLibFi / Skosmos

model/DataObject.php

Spacing +2 added lines, -2 removed lines

@@ -52,7 +52,7 @@ 
                 return isset($results[$lang]) ? $results[$lang] : null;
             } catch (EasyRdf\Http\Exception | EasyRdf\Exception | Throwable $e) {
                 if ($this->model->getConfig()->getLogCaughtExceptions()) {
-                    error_log('Caught exception: ' . $e->getMessage());
+                    error_log('Caught exception: '.$e->getMessage());
                 }
             }
         }
@@ -74,7 +74,7 @@ 
                 return isset($results) ? $results : null;
             } catch (EasyRdf\Http\Exception | EasyRdf\Exception | Throwable $e) {
                 if ($this->model->getConfig()->getLogCaughtExceptions()) {
-                    error_log('Caught exception: ' . $e->getMessage());
+                    error_log('Caught exception: '.$e->getMessage());
                 }
             }
         }

model/Vocabulary.php

Spacing +8 added lines, -8 removed lines

@@ -102,7 +102,7 @@ 
             return $lname;
         }
         // already a full URI
-        return $this->getUriSpace() . $lname;
+        return $this->getUriSpace().$lname;
     }
 
     /**
@@ -164,7 +164,7 @@ 
             $result = $sparql->queryConceptScheme($defaultcs);
         } catch (EasyRdf\Http\Exception | EasyRdf\Exception | Throwable $e) {
              if ($this->model->getConfig()->getLogCaughtExceptions()) {
-                 error_log('Caught exception: ' . $e->getMessage());
+                 error_log('Caught exception: '.$e->getMessage());
              }
              return null;
         }
@@ -197,7 +197,7 @@ 
                 foreach ($conceptscheme->allLiterals($prop, null) as $val) {
                     $prop = (substr($prop, 0, 5) == 'dc11:') ? str_replace('dc11:', 'dc:', $prop) : $prop;
                     if ($val->getValue() instanceof DateTime) {
-                        $val = Punic\Calendar::formatDate($val->getValue(), 'full', $lang) . ' ' . Punic\Calendar::format($val->getValue(), 'HH:mm:ss', $lang);
+                        $val = Punic\Calendar::formatDate($val->getValue(), 'full', $lang).' '.Punic\Calendar::format($val->getValue(), 'HH:mm:ss', $lang);
                     }
                     $ret[$prop][] = $val;
                 }
@@ -254,7 +254,7 @@ 
             $conceptSchemes = $this->getSparql()->queryConceptSchemes($lang);
         } catch (EasyRdf\Http\Exception | EasyRdf\Exception | Throwable $e) {
              if ($this->model->getConfig()->getLogCaughtExceptions()) {
-                 error_log('Caught exception: ' . $e->getMessage());
+                 error_log('Caught exception: '.$e->getMessage());
              }
         }
         return $conceptSchemes;
@@ -325,7 +325,7 @@ 
         }
         // don't know how to parse
         $rev = $parts[2];
-        $datestr = $parts[3] . ' ' . $parts[4];
+        $datestr = $parts[3].' '.$parts[4];
 
         return "$datestr (r$rev)";
     }
@@ -336,7 +336,7 @@ 
      * @param string $array the uri of the concept array class, eg. isothes:ThesaurusArray
      * @param string $group the uri of the  concept group class, eg. isothes:ConceptGroup
      */
-    public function getStatistics($lang = '', $array=null, $group=null)
+    public function getStatistics($lang = '', $array = null, $group = null)
     {
         $sparql = $this->getSparql();
         // find the number of concepts
@@ -454,7 +454,7 @@ 
             $conceptInfo = $sparql->queryConceptInfo($uri, $this->config->getArrayClassURI(), array($this), $clang);
         } catch (EasyRdf\Http\Exception | EasyRdf\Exception | Throwable $e) {
              if ($this->model->getConfig()->getLogCaughtExceptions()) {
-                 error_log('Caught exception: ' . $e->getMessage());
+                 error_log('Caught exception: '.$e->getMessage());
              }
         }
         return $conceptInfo;
@@ -665,7 +665,7 @@ 
         return $this->getSparql()->queryChangeList($prop, $clang, $offset, $limit, $showDeprecated);
     }
 
-    public function getTitle($lang=null) {
+    public function getTitle($lang = null) {
       return $this->config->getTitle($lang);
     }
 

model/VocabularyConfig.php

Spacing +4 added lines, -4 removed lines

@@ -29,7 +29,7 @@ 
     "skos:related", "skos:historyNote", "skosmos:memberOf",
     "skosmos:memberOfArray");
 
-    public function __construct($resource, $globalPlugins=array())
+    public function __construct($resource, $globalPlugins = array())
     {
         $this->resource = $resource;
         $this->globalPlugins = $globalPlugins;
@@ -118,7 +118,7 @@ 
                 $paramValue = $paramLiteral->getValue();
                 $paramLang = $paramLiteral->getLang();
                 if ($paramLang) {
-                    $paramName .= '_' . $paramLang;
+                    $paramName .= '_'.$paramLang;
                 }
                 $this->pluginParameters[$pluginName][$paramName] = $paramValue;
             }
@@ -150,7 +150,7 @@ 
         $labelProperty = $override->getResource('skosmos:property');
         $labelPropUri = $labelProperty->shorten();
         if (empty($this->labelOverrides[$labelPropUri])) {
-            $this->labelOverrides[$labelPropUri]  = array();
+            $this->labelOverrides[$labelPropUri] = array();
         }
         $newOverrides = array();
 
@@ -224,7 +224,7 @@ 
         $langs = $this->getLanguages();
         $deflang = reset($langs); // picking the first one from the list with reset since the keys are not numeric
         if (sizeof($langs) > 1) {
-            trigger_error("Default language for vocabulary '" . $this->getShortName() . "' unknown, choosing '$deflang'.", E_USER_WARNING);
+            trigger_error("Default language for vocabulary '".$this->getShortName()."' unknown, choosing '$deflang'.", E_USER_WARNING);
         }
 
         return $deflang;

model/ConceptSearchParameters.php

Spacing +2 added lines, -2 removed lines

@@ -71,11 +71,11 @@
         if ((!isset($term) || strlen(trim($term)) === 0) && $this->rest)
             $term = $this->request->getQueryParamRaw('label');
         $term = trim($term); // surrounding whitespace is not considered significant
-        $term = Normalizer::normalize( $term, Normalizer::FORM_C ); //Normalize decomposed unicode characters #1184
+        $term = Normalizer::normalize($term, Normalizer::FORM_C); //Normalize decomposed unicode characters #1184
         if ($this->rest) {
             return $term;
         }
-        return strpos($term, "*") === false ? $term . "*" : $term; // default to prefix search
+        return strpos($term, "*") === false ? $term."*" : $term; // default to prefix search
     }
 
     public function getContentLang()

model/PluginRegister.php

Spacing +10 added lines, -10 removed lines

@@ -3,7 +3,7 @@ 
 class PluginRegister {
     private $requestedPlugins;
 
-    public function __construct($requestedPlugins=array()) {
+    public function __construct($requestedPlugins = array()) {
         $this->requestedPlugins = $requestedPlugins;
         $this->pluginOrder = array();
         foreach ($this->requestedPlugins as $index => $value) {
@@ -45,7 +45,7 @@ 
      * @param boolean $raw interpret $type values as raw text instead of files
      * @return array
      */
-    private function filterPlugins($type, $raw=false) {
+    private function filterPlugins($type, $raw = false) {
         $plugins = $this->getPlugins();
         $plugins = $this->sortPlugins($plugins);
         $ret = array();
@@ -58,7 +58,7 @@ 
                     }
                     else {
                         foreach ($files[$type] as $file) {
-                            array_push($ret[$name], 'plugins/' . $name . '/' . $file);
+                            array_push($ret[$name], 'plugins/'.$name.'/'.$file);
                         }
                     }
                 }
@@ -89,7 +89,7 @@ 
      * @param array $names the plugin name strings (foldernames) in an array
      * @return array
      */
-    public function getPluginsJS($names=null) {
+    public function getPluginsJS($names = null) {
         if ($names) {
             $names = array_merge($this->requestedPlugins, $names);
             return $this->filterPluginsByName('js', $names);
@@ -102,7 +102,7 @@ 
      * @param array $names the plugin name strings (foldernames) in an array
      * @return array
      */
-    public function getPluginsCSS($names=null) {
+    public function getPluginsCSS($names = null) {
         if ($names) {
             $names = array_merge($this->requestedPlugins, $names);
             return $this->filterPluginsByName('css', $names);
@@ -115,7 +115,7 @@ 
      * @param array $names the plugin name strings (foldernames) in an array
      * @return array
      */
-    public function getPluginsTemplates($names=null) {
+    public function getPluginsTemplates($names = null) {
         if ($names) {
             $names = array_merge($this->requestedPlugins, $names);
             return $this->filterPluginsByName('templates', $names);
@@ -128,15 +128,15 @@ 
      * @param array $names the plugin name strings (foldernames) in an array
      * @return array
      */
-    public function getTemplates($names=null) {
+    public function getTemplates($names = null) {
         $templateStrings = array();
         $plugins = $this->getPluginsTemplates($names);
         foreach ($plugins as $folder => $templates) {
             foreach ($templates as $path) {
                 if (file_exists($path)) {
                     $filename = explode('/', $path);
-                    $filename = $filename[sizeof($filename)-1];
-                    $id = $folder . '-' . substr($filename, 0 , (strrpos($filename, ".")));
+                    $filename = $filename[sizeof($filename) - 1];
+                    $id = $folder.'-'.substr($filename, 0, (strrpos($filename, ".")));
                     $templateStrings[$id] = file_get_contents($path);
                 }
             }
@@ -149,7 +149,7 @@ 
      * @param array $names the plugin name strings (foldernames) in an array
      * @return array
      */
-    public function getPluginCallbacks($names=null) {
+    public function getPluginCallbacks($names = null) {
         if ($names) {
             $names = array_merge($this->requestedPlugins, $names);
             return $this->filterPluginsByName('callback', $names);

model/Request.php

Spacing +2 added lines, -2 removed lines

@@ -169,7 +169,7 @@ 
 
     public function getRequestUri()
     {
-        return $this->getServerConstant('HTTP_HOST') . $this->getServerConstant('REQUEST_URI');
+        return $this->getServerConstant('HTTP_HOST').$this->getServerConstant('REQUEST_URI');
     }
 
     /**
@@ -177,7 +177,7 @@ 
      * @param string $newlang new UI language to set
      * @return string the relative url of the page
      */
-    public function getLangUrl($newlang=null)
+    public function getLangUrl($newlang = null)
     {
         $script_name = str_replace('/index.php', '', $this->getServerConstant('SCRIPT_NAME'));
         $langurl = substr(str_replace($script_name, '', $this->getServerConstant('REQUEST_URI')), 1);

model/ConceptPropertyValueLiteral.php

Spacing +2 added lines, -2 removed lines

@@ -69,7 +69,7 @@ 
                 return Punic\Calendar::formatDate($val, 'short');
             } catch (Exception $e) {
                 trigger_error($e->getMessage(), E_USER_WARNING);
-                return (string) $this->literal;
+                return (string)$this->literal;
             }
         }
         return $this->literal->getValue();
@@ -96,7 +96,7 @@ 
     {
         $graph = $this->resource->getGraph();
         $labelResources = $graph->resourcesMatching('skosxl:literalForm', $this->literal);
-        foreach($labelResources as $labres) {
+        foreach ($labelResources as $labres) {
             return new LabelSkosXL($this->model, $labres);
         }
         return null;

model/sparql/GenericSparql.php

Spacing +52 added lines, -52 removed lines

@@ -88,11 +88,11 @@ 
     protected function query($query) {
         $queryId = sprintf("%05d", rand(0, 99999));
         $logger = $this->model->getLogger();
-        $logger->info("[qid $queryId] SPARQL query:\n" . $this->generateQueryPrefixes($query) . "\n$query\n");
+        $logger->info("[qid $queryId] SPARQL query:\n".$this->generateQueryPrefixes($query)."\n$query\n");
         $starttime = microtime(true);
         $result = $this->client->query($query);
         $elapsed = intval(round((microtime(true) - $starttime) * 1000));
-        if(method_exists($result, 'numRows')) {
+        if (method_exists($result, 'numRows')) {
             $numRows = $result->numRows();
             $logger->info("[qid $queryId] result: $numRows rows returned in $elapsed ms");
         } else { // graph result
@@ -108,7 +108,7 @@ 
      * @param Vocabulary[]|null $vocabs
      * @return string
      */
-    protected function generateFromClause($vocabs=null) {
+    protected function generateFromClause($vocabs = null) {
         if (!$vocabs) {
             return $this->graph !== '?graph' && $this->graph !== NULL ? "FROM <$this->graph>" : '';
         }
@@ -250,7 +250,7 @@ 
 
 	$quote_string = function($val) { return "'$val'"; };
 	$quoted_values = array_map($quote_string, $langs);
-	$langFilter = "FILTER(?lang IN (" . implode(',', $quoted_values) . "))";
+	$langFilter = "FILTER(?lang IN (".implode(',', $quoted_values)."))";
 
         $values = $this->formatValues('?type', $classes, 'uri');
         $valuesProp = $this->formatValues('?prop', $props, null);
@@ -697,9 +697,9 @@ 
                 $conceptscheme['title'] = $row->title->getValue();
             }
             // add dct:subject and their labels in the result
-            if(isset($row->domain) && isset($row->domainLabel)){
-                $conceptscheme['subject']['uri']=$row->domain->getURI();
-                $conceptscheme['subject']['prefLabel']=$row->domainLabel->getValue();
+            if (isset($row->domain) && isset($row->domainLabel)) {
+                $conceptscheme['subject']['uri'] = $row->domain->getURI();
+                $conceptscheme['subject']['prefLabel'] = $row->domainLabel->getValue();
             }
 
             $ret[$row->cs->getURI()] = $conceptscheme;
@@ -766,7 +766,7 @@ 
           $values[] = "<$graph>";
         }
         if (count($values)) {
-          return "FILTER (?graph IN (" . implode(',', $values) . "))";
+          return "FILTER (?graph IN (".implode(',', $values)."))";
         }
     }
 
@@ -777,16 +777,16 @@ 
      * @return string sparql query clauses
      */
     protected function formatLimitAndOffset($limit, $offset) {
-        $limit = ($limit) ? 'LIMIT ' . $limit : '';
-        $offset = ($offset) ? 'OFFSET ' . $offset : '';
+        $limit = ($limit) ? 'LIMIT '.$limit : '';
+        $offset = ($offset) ? 'OFFSET '.$offset : '';
         // eliminating whitespace and line changes when the conditions aren't needed.
         $limitandoffset = '';
         if ($limit && $offset) {
-            $limitandoffset = "\n" . $limit . "\n" . $offset;
+            $limitandoffset = "\n".$limit."\n".$offset;
         } elseif ($limit) {
-            $limitandoffset = "\n" . $limit;
+            $limitandoffset = "\n".$limit;
         } elseif ($offset) {
-            $limitandoffset = "\n" . $offset;
+            $limitandoffset = "\n".$offset;
         }
 
         return $limitandoffset;
@@ -938,14 +938,14 @@ 
         // if search language and UI/display language differ, must also consider case where there is no prefLabel in
         // the display language; in that case, should use the label with the same language as the matched label
         $labelcondFallback = ($searchLang != $lang) ?
-          "OPTIONAL { # in case previous OPTIONAL block gives no labels\n" .
+          "OPTIONAL { # in case previous OPTIONAL block gives no labels\n".
           "?s skos:prefLabel ?label . FILTER (LANGMATCHES(LANG(?label), LANG(?match))) }" : "";
 
         //  Including the labels if there is no query term given.
         if ($rawterm === '') {
           $labelClause = "?s skos:prefLabel ?label .";
-          $labelClause = ($lang) ? $labelClause . " FILTER (LANGMATCHES(LANG(?label), '$lang'))" : $labelClause . "";
-          return $labelClause . " BIND(?label AS ?match)";
+          $labelClause = ($lang) ? $labelClause." FILTER (LANGMATCHES(LANG(?label), '$lang'))" : $labelClause."";
+          return $labelClause." BIND(?label AS ?match)";
         }
 
         /*
@@ -1016,20 +1016,20 @@ 
         $schemecond = '';
         if (!empty($schemes)) {
             $conditions = array();
-            foreach($schemes as $scheme) {
+            foreach ($schemes as $scheme) {
                 $conditions[] = "{?s skos:inScheme <$scheme>}";
             }
-            $schemecond = '{'.implode(" UNION ",$conditions).'}';
+            $schemecond = '{'.implode(" UNION ", $conditions).'}';
         }
-        $filterDeprecated="";
+        $filterDeprecated = "";
         //show or hide deprecated concepts
-        if(!$showDeprecated){
-            $filterDeprecated="FILTER NOT EXISTS { ?s owl:deprecated true }";
+        if (!$showDeprecated) {
+            $filterDeprecated = "FILTER NOT EXISTS { ?s owl:deprecated true }";
         }
         // extra conditions for parent and group, if specified
-        $parentcond = ($params->getParentLimit()) ? "?s skos:broader+ <" . $params->getParentLimit() . "> ." : "";
-        $groupcond = ($params->getGroupLimit()) ? "<" . $params->getGroupLimit() . "> skos:member ?s ." : "";
-        $pgcond = $parentcond . $groupcond;
+        $parentcond = ($params->getParentLimit()) ? "?s skos:broader+ <".$params->getParentLimit()."> ." : "";
+        $groupcond = ($params->getGroupLimit()) ? "<".$params->getGroupLimit()."> skos:member ?s ." : "";
+        $pgcond = $parentcond.$groupcond;
 
         $orderextra = $this->isDefaultEndpoint() ? $this->graph : '';
 
@@ -1115,9 +1115,9 @@ 
             $hit['type'][] = $this->shortenUri($typeuri);
         }
 
-        if(!empty($fields)) {
+        if (!empty($fields)) {
             foreach ($fields as $prop) {
-                $propname = $prop . 's';
+                $propname = $prop.'s';
                 if (isset($row->$propname)) {
                     foreach (explode("\n", $row->$propname->getValue()) as $line) {
                         $rdata = str_getcsv($line, ',', '"', '"');
@@ -1132,7 +1132,7 @@ 
                             $propvals = $rdata[2];
                         }
 
-                        $hit['skos:' . $prop][] = $propvals;
+                        $hit['skos:'.$prop][] = $propvals;
                     }
                 }
             }
@@ -1208,7 +1208,7 @@ 
      * @return array query result object
      */
     public function queryConcepts($vocabs, $fields, $unique, $params, $showDeprecated = false) {
-        $query = $this->generateConceptSearchQuery($fields, $unique, $params,$showDeprecated);
+        $query = $this->generateConceptSearchQuery($fields, $unique, $params, $showDeprecated);
         $results = $this->query($query);
         return $this->transformConceptSearchResults($results, $vocabs, $fields);
     }
@@ -1263,10 +1263,10 @@ 
         $conditions = $this->formatFilterConditions($letter, $lang);
         $filtercondLabel = $conditions['filterpref'];
         $filtercondALabel = $conditions['filteralt'];
-        $qualifierClause = $qualifier ? "OPTIONAL { ?s <" . $qualifier->getURI() . "> ?qualifier }" : "";
-        $filterDeprecated="";
-        if(!$showDeprecated){
-            $filterDeprecated="FILTER NOT EXISTS { ?s owl:deprecated true }";
+        $qualifierClause = $qualifier ? "OPTIONAL { ?s <".$qualifier->getURI()."> ?qualifier }" : "";
+        $filterDeprecated = "";
+        if (!$showDeprecated) {
+            $filterDeprecated = "FILTER NOT EXISTS { ?s owl:deprecated true }";
         }
         $query = <<<EOQ
 SELECT DISTINCT ?s ?label ?alabel ?qualifier
@@ -1743,7 +1743,7 @@ 
                 if (!isset($row->label) || $row->label->getLang() === $lang) {
                     $ret[$row->object->getUri()] = $val;
                 } elseif ($row->label->getLang() === $fallbacklang) {
-                    $val['label'] .= ' (' . $row->label->getLang() . ')';
+                    $val['label'] .= ' ('.$row->label->getLang().')';
                     $ret[$row->object->getUri()] = $val;
                 }
             }
@@ -1839,10 +1839,10 @@ 
 
             $label = null;
             if (isset($row->label)) {
-                if ($row->label->getLang() == $lang || strpos($row->label->getLang(), $lang . "-") == 0) {
+                if ($row->label->getLang() == $lang || strpos($row->label->getLang(), $lang."-") == 0) {
                     $label = $row->label->getValue();
                 } else {
-                    $label = $row->label->getValue() . " (" . $row->label->getLang() . ")";
+                    $label = $row->label->getValue()." (".$row->label->getLang().")";
                 }
 
             }
@@ -1918,8 +1918,8 @@ 
         foreach ($result as $row) {
             if (isset($row->top) && isset($row->label)) {
                 $label = $row->label->getValue();
-                if ($row->label->getLang() && $row->label->getLang() !== $lang && strpos($row->label->getLang(), $lang . "-") !== 0) {
-                    $label .= ' (' . $row->label->getLang() . ')';
+                if ($row->label->getLang() && $row->label->getLang() !== $lang && strpos($row->label->getLang(), $lang."-") !== 0) {
+                    $label .= ' ('.$row->label->getLang().')';
                 }
                 $top = array('uri' => $row->top->getUri(), 'topConceptOf' => $row->topuri->getUri(), 'label' => $label, 'hasChildren' => filter_var($row->children->getValue(), FILTER_VALIDATE_BOOLEAN));
                 if (isset($row->notation)) {
@@ -2012,7 +2012,7 @@ 
                 $ret[$uri]['exact'] = $row->exact->getUri();
             }
             if (isset($row->tops)) {
-               $topConceptsList=explode(" ", $row->tops->getValue());
+               $topConceptsList = explode(" ", $row->tops->getValue());
                // sort to guarantee an alphabetical ordering of the URI
                sort($topConceptsList);
                $ret[$uri]['tops'] = $topConceptsList;
@@ -2025,8 +2025,8 @@ 
                 $label = null;
                 if (isset($row->childlabel)) {
                     $label = $row->childlabel->getValue();
-                    if ($row->childlabel->getLang() !== $lang && strpos($row->childlabel->getLang(), $lang . "-") !== 0) {
-                        $label .= " (" . $row->childlabel->getLang() . ")";
+                    if ($row->childlabel->getLang() !== $lang && strpos($row->childlabel->getLang(), $lang."-") !== 0) {
+                        $label .= " (".$row->childlabel->getLang().")";
                     }
 
                 }
@@ -2047,8 +2047,8 @@ 
             }
             if (isset($row->label)) {
                 $preflabel = $row->label->getValue();
-                if ($row->label->getLang() && $row->label->getLang() !== $lang && strpos($row->label->getLang(), $lang . "-") !== 0) {
-                    $preflabel .= ' (' . $row->label->getLang() . ')';
+                if ($row->label->getLang() && $row->label->getLang() !== $lang && strpos($row->label->getLang(), $lang."-") !== 0) {
+                    $preflabel .= ' ('.$row->label->getLang().')';
                 }
 
                 $ret[$uri]['prefLabel'] = $preflabel;
@@ -2169,9 +2169,9 @@ 
      */
     private function generateConceptGroupContentsQuery($groupClass, $group, $lang, $showDeprecated = false) {
         $fcl = $this->generateFromClause();
-        $filterDeprecated="";
-        if(!$showDeprecated){
-            $filterDeprecated="  FILTER NOT EXISTS { ?conc owl:deprecated true }";
+        $filterDeprecated = "";
+        if (!$showDeprecated) {
+            $filterDeprecated = "  FILTER NOT EXISTS { ?conc owl:deprecated true }";
         }
         $query = <<<EOQ
 SELECT ?conc ?super ?label ?members ?type ?notation $fcl
@@ -2210,10 +2210,10 @@ 
                     'type' => array($row->type->shorten()),
                 );
                 if (isset($row->label)) {
-                    if ($row->label->getLang() == $lang || strpos($row->label->getLang(), $lang . "-") == 0) {
+                    if ($row->label->getLang() == $lang || strpos($row->label->getLang(), $lang."-") == 0) {
                         $values[$row->conc->getURI()]['prefLabel'] = $row->label->getValue();
                     } else {
-                        $values[$row->conc->getURI()]['prefLabel'] = $row->label->getValue() . " (" . $row->label->getLang() . ")";
+                        $values[$row->conc->getURI()]['prefLabel'] = $row->label->getValue()." (".$row->label->getLang().")";
                     }
 
                 }
@@ -2241,8 +2241,8 @@ 
      * @param boolean $showDeprecated whether to include deprecated concepts in search results
      * @return array Result array with concept URI as key and concept label as value
      */
-    public function listConceptGroupContents($groupClass, $group, $lang,$showDeprecated = false) {
-        $query = $this->generateConceptGroupContentsQuery($groupClass, $group, $lang,$showDeprecated);
+    public function listConceptGroupContents($groupClass, $group, $lang, $showDeprecated = false) {
+        $query = $this->generateConceptGroupContentsQuery($groupClass, $group, $lang, $showDeprecated);
         $result = $this->query($query);
         return $this->transformConceptGroupContentsResults($result, $lang);
     }
@@ -2256,9 +2256,9 @@ 
      * @param boolean $showDeprecated whether to include deprecated concepts in the change list
      * @return string sparql query
      */
-    private function generateChangeListQuery($prop, $lang, $offset, $limit=200, $showDeprecated=false) {
+    private function generateChangeListQuery($prop, $lang, $offset, $limit = 200, $showDeprecated = false) {
         $fcl = $this->generateFromClause();
-        $offset = ($offset) ? 'OFFSET ' . $offset : '';
+        $offset = ($offset) ? 'OFFSET '.$offset : '';
 
         //Additional clauses when deprecated concepts need to be included in the results
         $deprecatedOptions = '';
@@ -2336,7 +2336,7 @@ 
      * @param boolean $showDeprecated whether to include deprecated concepts in the change list
      * @return array Result array
      */
-    public function queryChangeList($prop, $lang, $offset, $limit, $showDeprecated=false) {
+    public function queryChangeList($prop, $lang, $offset, $limit, $showDeprecated = false) {
         $query = $this->generateChangeListQuery($prop, $lang, $offset, $limit, $showDeprecated);
 
         $result = $this->query($query);