MachineLearningFeatures.__init__() - Code Metrics - Inspection of "Update LICENSE.txt" - usnistgov/ocr-pipeline - Measure and Improve Code Quality continuously with Scrutinizer

Completed

Branch — master (e214b7)

by Philippe

created 2017-07-17 12:35 UTC

MachineLearningFeatures.init() A

↳ Parent: MachineLearningFeatures

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"""Package containing all the machine learning functions and objects

.. Authors:
    Philippe Dessauw
    [email protected]

.. Sponsor:
    Alden Dima
    [email protected]
    Information Systems Group
    Software and Systems Division
    Information Technology Laboratory
    National Institute of Standards and Technology
    http://www.nist.gov/itl/ssd/is
"""
import logging
from numpy import mean
from numpy.lib.polynomial import poly1d


logger = logging.getLogger("app")


class MachineLearningAlgorithm(object):
    """Machine learning algorithm
    """

    def __init__(self):
        self.training_set = {
            "features": [],
            "results": []
        }

        self.classifier = None

        logger.info("Model created (new)")

    def set_classifier(self, cls):
        """Set the classifier

        Args:
            cls (object): Classifier object
        """
        self.classifier = cls
        logger.info(cls.__class__.__name__+" model loaded")

    def set_training_set(self, features, results):
        """Setup the training set and verify its integrity

        Args:
            features (list): Training set features
            results (list): Training set results
        """
        if len(features) != len(results):
            raise AttributeError("Number of features and result are different")

        self.training_set["features"] = features
        self.training_set["results"] = results

        logger.debug("Training set uploaded")

    def train(self):
        """Train the model with the given training set
        """
        self.classifier.fit(self.training_set["features"], self.training_set["results"])
        logger.debug("Model trained")

    def classify(self, features):
        """Classify features

        Args:
            features (list): Features to classify

        Returns:
            list: Results of the classification
        """
        return self.classifier.predict(features)

    def compute_error(self, features, results):
        """Compute classification error

        Args:
            features (list): Features to classify
            results (list): Expected results

        Returns:
            float: Classification error
        """
        prediction = self.classifier.predict(features)
        error = 0

        for index in xrange(len(prediction)):
            if results[index] < 0:
                continue

            error += ((prediction[index] - results[index]) / 5)**2

        error /= (2*len(prediction))
        return error


class MachineLearningFeatures(object):
    """Feature calculator for machine learning
    """

    def __init__(self):
        self.features = []

    def extract_features(self, line, unigrams, text_stats):
        """Extract features from a given line

        Args:
            line (Line): Line to get features from
            unigrams (Unigrams): Unigrams for the given line
            text_stats (Statistics): Statistics of the text the line is coming from

        Returns:
            list: List of the features
        """
        # Simple features
        features = [
            float(line.stats["orig"].get_stat("lw_char")),
            float(line.stats["orig"].get_stat("up_char")),
            float(line.stats["orig"].get_stat("sp_char")),
            float(line.stats["orig"].get_stat("nb_char")),
            float(len(line.tokens)),
        ]

        # Additional features
        fappend = features.append
        fappend(line.get_clean_stats().get_stat("lw_char"))
        fappend(line.get_clean_stats().get_stat("up_char"))
        fappend(line.get_clean_stats().get_stat("sp_char"))
        fappend(line.get_clean_stats().get_stat("nb_char"))
        fappend(line.get_line_score())
        fappend(len(line.get_orig_line()))
        fappend(len(line.get_clean_line()))

        u = unigrams

        tk_len = [len(token[0]) for token in line.tokens]
        word_avg_len = 0

        if len(tk_len) > 0:
            word_avg_len = mean(tk_len)

        fappend(float(word_avg_len))

        t0 = [u[tk[0]] for tk in line.tokens]
        s0 = 0

        if len(t0) != 0:
            s0 = mean(t0)

        fappend(float(s0))

        t1 = [u[tk[1]] for tk in line.tokens if not tk[1] is None]
        s1 = 0

        if len(t1) != 0:
            s1 = mean(t1)

        fappend(float(s1))

        t2 = [u[t] for tk in line.tokens if not tk[2] is None for t in tk[2].keys()]
        s2 = 0

        if len(t2) != 0:
            s2 = mean(t2)

        fappend(float(s2))

        # Regularization
        orig_chars = sum(features[:4])
        clean_chars = sum(features[5:9])

        f = [
            features[0] / orig_chars,
            features[1] / orig_chars,
            features[2] / orig_chars,
            features[3] / orig_chars
        ]

        if clean_chars != 0:
            f += [features[5] / clean_chars,
                  features[6] / clean_chars,
                  features[7] / clean_chars,
                  features[8] / clean_chars]
        else:
            f += [0, 0, 0, 0]

        f += [features[9],
              features[4] / text_stats.get_stat("word_avg_nb"),
              features[12] / text_stats.get_stat("word_avg_length"),
              features[10] / text_stats.get_stat("line_avg_length"),
              features[11] / text_stats.get_stat("line_avg_length")]

        if features[13] != 0:
            f.append(features[14] / features[13])
            f.append(features[15] / features[13])
        else:
            f.append(0)
            f.append(0)

        features = f

        # Ordering the data set
        features = [
            features[11],  # Original line average len
            features[12],  # Clean line average len
            features[9],  # Original line average len
            features[10],  # Clean line average len
            features[13],  # Original line average len
            features[14],  # Clean line average len
            features[0],  # Original line average len
            features[1],  # Clean line average len
            features[2],  # Original line average len
            features[3],  # Clean line average len
            features[4],  # Original line average len
            features[5],  # Clean line average len
            features[6],  # Original line average len
            features[7],  # Clean line average len
        ]

        # Polynomial features
        degree = 1
        poly_feat = []
        p_feat = poly1d(features)

        for d in xrange(degree):
            poly_feat += (p_feat ** (d+1)).coeffs.tolist()

        del poly_feat[5]

        self.features = poly_feat

        return self.features


1			"""Package containing all the machine learning functions and objects
2
3			.. Authors:
4			Philippe Dessauw
5			[email protected]
6
7			.. Sponsor:
8			Alden Dima
9			[email protected]
10			Information Systems Group
11			Software and Systems Division
12			Information Technology Laboratory
13			National Institute of Standards and Technology
14			http://www.nist.gov/itl/ssd/is
15			"""
16			import logging
17			from numpy import mean
18			from numpy.lib.polynomial import poly1d
19
20
21			logger = logging.getLogger("app")
22
23
24			class MachineLearningAlgorithm(object):
25			"""Machine learning algorithm
26			"""
27
28			def __init__(self):
29			self.training_set = {
30			"features": [],
31			"results": []
32			}
33
34			self.classifier = None
35
36			logger.info("Model created (new)")
37
38			def set_classifier(self, cls):
39			"""Set the classifier
40
41			Args:
42			cls (object): Classifier object
43			"""
44			self.classifier = cls
45			logger.info(cls.__class__.__name__+" model loaded")
46
47			def set_training_set(self, features, results):
48			"""Setup the training set and verify its integrity
49
50			Args:
51			features (list): Training set features
52			results (list): Training set results
53			"""
54			if len(features) != len(results):
55			raise AttributeError("Number of features and result are different")
56
57			self.training_set["features"] = features
58			self.training_set["results"] = results
59
60			logger.debug("Training set uploaded")
61
62			def train(self):
63			"""Train the model with the given training set
64			"""
65			self.classifier.fit(self.training_set["features"], self.training_set["results"])
66			logger.debug("Model trained")
67
68			def classify(self, features):
69			"""Classify features
70
71			Args:
72			features (list): Features to classify
73
74			Returns:
75			list: Results of the classification
76			"""
77			return self.classifier.predict(features)
78
79			def compute_error(self, features, results):
80			"""Compute classification error
81
82			Args:
83			features (list): Features to classify
84			results (list): Expected results
85
86			Returns:
87			float: Classification error
88			"""
89			prediction = self.classifier.predict(features)
90			error = 0
91
92			for index in xrange(len(prediction)):
93			if results[index] < 0:
94			continue
95
96			error += ((prediction[index] - results[index]) / 5)**2
97
98			error /= (2*len(prediction))
99			return error
100
101
102			class MachineLearningFeatures(object):
103			"""Feature calculator for machine learning
104			"""
105
106			def __init__(self):
107			self.features = []
108
109			def extract_features(self, line, unigrams, text_stats):
110			"""Extract features from a given line
111
112			Args:
113			line (Line): Line to get features from
114			unigrams (Unigrams): Unigrams for the given line
115			text_stats (Statistics): Statistics of the text the line is coming from
116
117			Returns:
118			list: List of the features
119			"""
120			# Simple features
121			features = [
122			float(line.stats["orig"].get_stat("lw_char")),
123			float(line.stats["orig"].get_stat("up_char")),
124			float(line.stats["orig"].get_stat("sp_char")),
125			float(line.stats["orig"].get_stat("nb_char")),
126			float(len(line.tokens)),
127			]
128
129			# Additional features
130			fappend = features.append
131			fappend(line.get_clean_stats().get_stat("lw_char"))
132			fappend(line.get_clean_stats().get_stat("up_char"))
133			fappend(line.get_clean_stats().get_stat("sp_char"))
134			fappend(line.get_clean_stats().get_stat("nb_char"))
135			fappend(line.get_line_score())
136			fappend(len(line.get_orig_line()))
137			fappend(len(line.get_clean_line()))
138
139			u = unigrams
140
141			tk_len = [len(token[0]) for token in line.tokens]
142			word_avg_len = 0
143
144			if len(tk_len) > 0:
145			word_avg_len = mean(tk_len)
146
147			fappend(float(word_avg_len))
148
149			t0 = [u[tk[0]] for tk in line.tokens]
150			s0 = 0
151
152			if len(t0) != 0:
153			s0 = mean(t0)
154
155			fappend(float(s0))
156
157			t1 = [u[tk[1]] for tk in line.tokens if not tk[1] is None]
158			s1 = 0
159
160			if len(t1) != 0:
161			s1 = mean(t1)
162
163			fappend(float(s1))
164
165			t2 = [u[t] for tk in line.tokens if not tk[2] is None for t in tk[2].keys()]
166			s2 = 0
167
168			if len(t2) != 0:
169			s2 = mean(t2)
170
171			fappend(float(s2))
172
173			# Regularization
174			orig_chars = sum(features[:4])
175			clean_chars = sum(features[5:9])
176
177			f = [
178			features[0] / orig_chars,
179			features[1] / orig_chars,
180			features[2] / orig_chars,
181			features[3] / orig_chars
182			]
183
184			if clean_chars != 0:
185			f += [features[5] / clean_chars,
186			features[6] / clean_chars,
187			features[7] / clean_chars,
188			features[8] / clean_chars]
189			else:
190			f += [0, 0, 0, 0]
191
192			f += [features[9],
193			features[4] / text_stats.get_stat("word_avg_nb"),
194			features[12] / text_stats.get_stat("word_avg_length"),
195			features[10] / text_stats.get_stat("line_avg_length"),
196			features[11] / text_stats.get_stat("line_avg_length")]
197
198			if features[13] != 0:
199			f.append(features[14] / features[13])
200			f.append(features[15] / features[13])
201			else:
202			f.append(0)
203			f.append(0)
204
205			features = f
206
207			# Ordering the data set
208			features = [
209			features[11], # Original line average len
210			features[12], # Clean line average len
211			features[9], # Original line average len
212			features[10], # Clean line average len
213			features[13], # Original line average len
214			features[14], # Clean line average len
215			features[0], # Original line average len
216			features[1], # Clean line average len
217			features[2], # Original line average len
218			features[3], # Clean line average len
219			features[4], # Original line average len
220			features[5], # Clean line average len
221			features[6], # Original line average len
222			features[7], # Clean line average len
223			]
224
225			# Polynomial features
226			degree = 1
227			poly_feat = []
228			p_feat = poly1d(features)
229
230			for d in xrange(degree):
231			poly_feat += (p_feat ** (d+1)).coeffs.tolist()
232
233			del poly_feat[5]
234
235			self.features = poly_feat
236
237			return self.features
238

usnistgov / ocr-pipeline

Branch — master (e214b7)

MachineLearningFeatures.__init__() A

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