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Add quiet mode to run_goea

master . afae19...40ea71 . push triggered

  Data is cleaned up.
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Add run_goea quiet mode example. Add examples of custome GOEA print summaries.

master . f08732...afae19 . push triggered

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Removed minor change from summary. It is described in the detailed section

master . 7b1095...f08732 . push triggered

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Moved notes on obsolete GO Jupyter notebook higher because more than one user as...

master . 1b773c...7b1095 . push triggered

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Added link to Jupyter notebook for obsolete GO terms

master . cdf80e...1b773c . push triggered

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update link to new release

master . f813c6...cdf80e . push triggered

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Added links to issue explaining change in semantic similarity aspect counts. Upd...

master . 0bcd82...f813c6 . push triggered

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Use set rather than list for faster iteration

master . 1baa3b...0bcd82 . push triggered

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Documented how to suppress GODag output messages.

master . 357f35...1baa3b . push triggered

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Simplify jupyter notebook

master . 544169...357f35 . push triggered

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Updated jupyter notebook showing how to load and work with obsolete GO terms.

master . 64d57a...544169 . push triggered

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Update for more clearly named var holding list of optional attributes

master . eed01b...64d57a . push triggered

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Access test code from tests directory in import

master . 0f3651...eed01b . push triggered

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Added support for optional GO term attributes, consider and replaced_by.

master . 80f06c...0f3651 . push triggered

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Add new test for https://github.com/tanghaibao/goatools/issues/148

master . 9a112c...80f06c . push triggered

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Add option to work with all taxids using NCBI annotations

master . 9f9ab3...9a112c . push triggered

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Add link to Java implementation of Yang RWC

master . ef3015...9f9ab3 . push triggered

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clarity

master . e4c6af...ef3015 . push triggered

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Add links to first authors query in PubMed

master . 2e7d54...e4c6af . push triggered

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Add first authors

master . 6db702...2e7d54 . push triggered

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