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# -*- coding: utf-8 -*- |
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# |
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# This file is part of SENAITE.HEALTH |
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# |
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# Copyright 2018 by it's authors. |
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# Some rights reserved. See LICENSE.rst, CONTRIBUTORS.rst. |
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from Products.ATContentTypes.content import schemata |
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from AccessControl import ClassSecurityInfo |
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from Products.ATContentTypes.utils import DT2dt |
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from Products.ATExtensions.ateapi import RecordsField |
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from Products.Archetypes import atapi |
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from Products.Archetypes.public import * |
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from Products.CMFCore.utils import getToolByName |
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from Products.CMFPlone.utils import safe_unicode |
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from bika.lims import bikaMessageFactory as _b |
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from bika.health import bikaMessageFactory as _ |
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from bika.lims.browser.fields import AddressField |
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from bika.lims.browser.fields import DateTimeField as DateTimeField_bl |
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from bika.lims.browser.widgets import AddressWidget |
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from bika.lims.browser.widgets import DateTimeWidget as DateTimeWidget_bl |
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from bika.lims.browser.widgets import RecordsWidget |
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from bika.health.widgets import SplittedDateWidget |
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from bika.health.config import * |
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from bika.lims.content.person import Person |
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from bika.health.interfaces import IPatient |
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from bika.health.permissions import * |
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from bika.health.widgets import ReadonlyStringWidget |
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from datetime import datetime |
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from zope.component import getAdapters |
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from zope.interface import implements |
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from Products.Archetypes.references import HoldingReference |
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from bika.health.widgets.patientmenstrualstatuswidget import PatientMenstrualStatusWidget |
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from bika.lims.vocabularies import CustomPubPrefVocabularyFactory |
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schema = Person.schema.copy() + Schema(( |
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StringField('PatientID', |
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searchable=1, |
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required=0, |
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widget=ReadonlyStringWidget( |
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visible={'view': 'visible', 'edit': 'hidden'}, |
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label=_('Patient ID'), |
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css='readonly-emphasize', |
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), |
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), |
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ReferenceField('PrimaryReferrer', |
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vocabulary='get_clients', |
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allowed_types=('Client',), |
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relationship='PatientClient', |
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required=1, |
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widget=SelectionWidget( |
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format='select', |
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label=_('Client'), |
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), |
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), |
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ComputedField('PrimaryReferrerID', |
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expression="context.Schema()['PrimaryReferrer'].get(context) and context.Schema()['PrimaryReferrer'].get(context).getId() or None", |
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widget=ComputedWidget( |
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), |
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), |
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ComputedField('PrimaryReferrerTitle', |
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expression="context.Schema()['PrimaryReferrer'].get(context) and context.Schema()['PrimaryReferrer'].get(context).Title() or None", |
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widget=ComputedWidget( |
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), |
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), |
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ComputedField('PrimaryReferrerUID', |
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expression="context.Schema()['PrimaryReferrer'].get(context) and context.Schema()['PrimaryReferrer'].get(context).UID() or None", |
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widget=ComputedWidget( |
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), |
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), |
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ComputedField( |
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'PrimaryReferrerURL', |
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expression="context.getPrimaryReferrer().absolute_url_path() if context.getPrimaryReferrer() else ''", |
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widget=ComputedWidget( |
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visible=False |
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), |
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), |
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StringField('Gender', |
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vocabulary=GENDERS, |
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index='FieldIndex', |
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default='dk', |
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widget=SelectionWidget( |
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format='select', |
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label=_('Gender'), |
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), |
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), |
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StringField('Age', |
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widget=StringWidget( |
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label=_('Age'), |
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visible=0, |
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width=3, |
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), |
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), |
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DateTimeField_bl('BirthDate', |
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required=0, |
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validators=('isDateFormat',), |
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widget=DateTimeWidget_bl( |
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label=_('Birth date'), |
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datepicker_nofuture=1, |
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), |
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), |
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BooleanField('BirthDateEstimated', |
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default=False, |
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widget=BooleanWidget( |
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label=_('Birth date is estimated'), |
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), |
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), |
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RecordsField('AgeSplitted', |
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required=1, |
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widget=SplittedDateWidget( |
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label=_('Age'), |
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), |
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), |
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ComputedField( |
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'AgeSplittedStr', |
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expression="context.getAgeSplittedStr()", |
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widget=ComputedWidget(visible=False), |
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), |
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AddressField('CountryState', |
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widget=AddressWidget( |
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searchable=True, |
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label=_("Country and state"), |
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showLegend=True, |
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showDistrict=True, |
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showCopyFrom=False, |
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showCity=False, |
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showPostalCode=False, |
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showAddress=False, |
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), |
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), |
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RecordsField('PatientIdentifiers', |
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type='patientidentifiers', |
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subfields=('IdentifierType', |
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'Identifier'), |
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subfield_labels={'IdentifierType': _('Identifier Type'), |
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'Identifier': _('Identifier')}, |
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subfield_sizes={'Identifier': 15, |
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'Identifier Type': 25}, |
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widget=RecordsWidget( |
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label=_('Additional identifiers'), |
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description=_('Patient additional identifiers'), |
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combogrid_options={ |
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'IdentifierType': { |
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'colModel': [{'columnName':'IdentifierType', 'width':'30', 'label':_('Title')}, |
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{'columnName':'Description', 'width':'70', 'label':_('Description')}], |
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'url': 'getidentifiertypes', |
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'showOn': True, |
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'width': '550px' |
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}, |
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}, |
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), |
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), |
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ComputedField( |
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'PatientIdentifiersStr', |
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expression="context.getPatientIdentifiersStr()", |
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widget=ComputedWidget(visible=False), |
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), |
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TextField('Remarks', |
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searchable=True, |
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default_content_type='text/plain', |
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allowable_content_types = ('text/plain', ), |
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default_output_type="text/plain", |
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widget=TextAreaWidget( |
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macro="bika_widgets/remarks", |
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label=_('Remarks'), |
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append_only=True, |
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), |
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), |
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RecordsField('TreatmentHistory', |
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type='treatmenthistory', |
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subfields=('Treatment', |
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'Drug', |
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'Start', |
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'End'), |
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required_subfields=('Drug', |
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'Start', |
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'End'), |
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subfield_labels={'Drug': _('Drug'), |
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'Start': _('Start'), |
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'End': _('End')}, |
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subfield_sizes={'Drug': 40, |
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'Start': 10, |
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'End': 10}, |
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subfield_types={'Start': 'datepicker_nofuture', |
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'End': 'datepicker'}, |
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widget=RecordsWidget( |
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label='Drug History', |
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description=_("A list of patient treatments and drugs administered."), |
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combogrid_options={ |
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'Treatment': { |
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'colModel': [{'columnName':'Treatment', 'width':'30', 'label':_('Title')}, |
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{'columnName':'Description', 'width':'70', 'label':_('Description')}], |
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'url': 'gettreatments', |
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'showOn': True, |
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'width': '550px' |
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}, |
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'Drug': { |
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'colModel': [{'columnName':'Drug', 'width':'30', 'label':_('Title')}, |
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{'columnName':'Description', 'width':'70', 'label':_('Description')}], |
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'url': 'getdrugs', |
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'showOn': True, |
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'width': '550px' |
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}, |
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}, |
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), |
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), |
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RecordsField('Allergies', |
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type='allergies', |
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subfields=('DrugProhibition', |
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'Drug', |
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'Remarks'), |
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required_subfields=('DrugProhibition', |
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'Drug'), |
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subfield_labels={'DrugProhibition': _('Drug Prohibition Explanation'), |
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'Drug': _('Drug'), |
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'Remarks': _('Remarks')}, |
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subfield_sizes={'DrugProhibition': 30, |
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'Drug': 30, |
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'Remarks': 30}, |
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widget=RecordsWidget( |
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label='Allergies', |
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description=_("Known Patient allergies to keep information that can aid drug reaction interpretation"), |
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combogrid_options={ |
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'Drug': { |
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'colModel': [{'columnName':'Title', 'width':'30', 'label':_('Title')}, |
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{'columnName':'Description', 'width':'70', 'label':_('Description')}], |
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'url': 'getdrugs', |
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'showOn': True, |
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'width': '550px' |
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}, |
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'DrugProhibition': { |
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'colModel': [{'columnName':'DrugProhibition', 'width':'30', 'label':_('Title')}, |
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{'columnName':'Description', 'width':'70', 'label':_('Description')}], |
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'url': 'getdrugprohibitions', |
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'showOn': True, |
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'width': '550px' |
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}, |
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}, |
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), |
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), |
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RecordsField('ImmunizationHistory', |
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type='immunizationhistory', |
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subfields=('EPINumber', |
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'Immunization', |
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'VaccinationCenter', |
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'Date', |
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'Remarks'), |
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required_subfields=('EPINumber', |
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'Immunization', |
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'Date'), |
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subfield_labels={'EPINumber': _('EPI Number'), |
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'Immunization': _('Immunization'), |
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'VaccinationCenter': _('Vaccination Center'), |
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'Date': _('Date'), |
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'Remarks': _('Remarks')}, |
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subfield_sizes={'EPINumber': 12, |
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'Immunization': 20, |
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'VaccinationCenter': 10, 'Date': 10, 'Remarks': 25}, |
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subfield_types={'Date':'datepicker_nofuture'}, |
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widget=RecordsWidget( |
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label='Immunization History', |
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description=_("A list of immunizations administered to the patient."), |
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combogrid_options={ |
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'Immunization': { |
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'colModel': [{'columnName':'Immunization', 'width':'30', 'label':_('Title')}, |
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{'columnName':'Description', 'width':'70', 'label':_('Description')}], |
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'url': 'getimmunizations', |
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'showOn': True, |
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'width': '550px' |
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}, |
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'VaccinationCenter': { |
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'colModel': [{'columnName':'VaccinationCenter', 'width':'100', 'label':_('Title')}], |
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'url': 'getvaccinationcenters', |
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'showOn': True, |
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'width': '550px' |
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}, |
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}, |
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), |
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), |
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RecordsField('TravelHistory', |
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type='travelhistory', |
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subfields=('TripStartDate', |
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'TripEndDate', |
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'Country', |
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'Location', |
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'Remarks'), |
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required_subfields=('Country'), |
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subfield_labels={'TripStartDate': _('Trip Start Date', 'Start date'), |
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'TripEndDate': _('Trip End Date', 'End date'), |
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'Country': _('Country'), |
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'Location': _('Location'), |
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'Remarks': _('Remarks')}, |
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subfield_sizes={'TripStartDate': 10, |
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'TripEndDate': 10, |
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'Country': 20, |
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'Location': 20, |
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'Remarks': 25}, |
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subfield_types={'TripStartDate':'datepicker_nofuture', |
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'TripEndDate':'datepicker'}, |
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widget=RecordsWidget( |
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label='Travel History', |
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description=_("A list of places visited by the patient."), |
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combogrid_options={ |
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'Country': { |
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305
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|
|
'colModel': [{'columnName':'Code', 'width':'15', 'label':_('Code')}, |
|
306
|
|
|
{'columnName':'Country', 'width':'85', 'label':_('Country')}], |
|
307
|
|
|
'url': 'getCountries', |
|
308
|
|
|
'showOn': True, |
|
309
|
|
|
'width': "450px", |
|
310
|
|
|
}, |
|
311
|
|
|
}, |
|
312
|
|
|
), |
|
313
|
|
|
), |
|
314
|
|
|
RecordsField('ChronicConditions', |
|
315
|
|
|
type='chronicconditions', |
|
316
|
|
|
subfields=('Code', |
|
317
|
|
|
'Title', |
|
318
|
|
|
'Description', |
|
319
|
|
|
'Onset', |
|
320
|
|
|
'End'), |
|
321
|
|
|
required_subfields=('Title', |
|
322
|
|
|
'Onset'), |
|
323
|
|
|
subfield_sizes={'Code': 7, |
|
324
|
|
|
'Title': 20, |
|
325
|
|
|
'Description': 35, |
|
326
|
|
|
'Onset': 10, |
|
327
|
|
|
'End': 10}, |
|
328
|
|
|
subfield_types={'Onset': 'datepicker_nofuture', |
|
329
|
|
|
'End': 'datepicker'}, |
|
330
|
|
|
widget=RecordsWidget( |
|
331
|
|
|
label='Past Medical History', |
|
332
|
|
|
description=_("Patient's past medical history."), |
|
333
|
|
|
combogrid_options={ |
|
334
|
|
|
'Title': { |
|
335
|
|
|
'colModel': [{'columnName':'Code', 'width':'10', 'label':_('Code')}, |
|
336
|
|
|
{'columnName':'Title', 'width':'30', 'label':_('Title')}, |
|
337
|
|
|
{'columnName':'Description', 'width':'60', 'label':_('Description')}], |
|
338
|
|
|
'url': 'getdiseases', |
|
339
|
|
|
'showOn': True, |
|
340
|
|
|
'width': "650px", |
|
341
|
|
|
}, |
|
342
|
|
|
}, |
|
343
|
|
|
), |
|
344
|
|
|
), |
|
345
|
|
|
StringField('BirthPlace', schemata='Personal', |
|
|
|
|
|
|
346
|
|
|
widget=StringWidget( |
|
|
|
|
|
|
347
|
|
|
label=_('Birth place'), |
|
348
|
|
|
), |
|
349
|
|
|
), |
|
350
|
|
|
# TODO This field will be removed on release 319. We maintain this field on release 318 |
|
351
|
|
|
# because of the transference between string field and content type data. |
|
352
|
|
|
StringField('Ethnicity', schemata='Personal', |
|
|
|
|
|
|
353
|
|
|
index='FieldIndex', |
|
354
|
|
|
vocabulary=ETHNICITIES, |
|
355
|
|
|
widget=ReferenceWidget( |
|
|
|
|
|
|
356
|
|
|
label=_('Ethnicity'), |
|
357
|
|
|
description=_("Ethnicity eg. Asian, African, etc."), |
|
358
|
|
|
visible=False, |
|
359
|
|
|
), |
|
360
|
|
|
), |
|
361
|
|
|
# TODO This field will change its name on v319 and it'll be called Ethnicity |
|
362
|
|
|
ReferenceField('Ethnicity_Obj', schemata='Personal', |
|
|
|
|
|
|
363
|
|
|
vocabulary='getEthnicitiesVocabulary', |
|
364
|
|
|
allowed_types = ('Ethnicity',), |
|
365
|
|
|
relationship = 'PatientEthnicity', |
|
366
|
|
|
widget=SelectionWidget( |
|
|
|
|
|
|
367
|
|
|
format='select', |
|
368
|
|
|
label=_('Ethnicity'), |
|
369
|
|
|
description=_("Ethnicity eg. Asian, African, etc."), |
|
370
|
|
|
), |
|
371
|
|
|
), |
|
372
|
|
|
StringField('Citizenship', schemata='Personal', |
|
|
|
|
|
|
373
|
|
|
widget=StringWidget( |
|
|
|
|
|
|
374
|
|
|
label=_('Citizenship'), |
|
375
|
|
|
), |
|
376
|
|
|
), |
|
377
|
|
|
StringField('MothersName', schemata='Personal', |
|
|
|
|
|
|
378
|
|
|
widget=StringWidget( |
|
|
|
|
|
|
379
|
|
|
label=_('Mothers name'), |
|
380
|
|
|
), |
|
381
|
|
|
), |
|
382
|
|
|
StringField('FathersName', schemata='Personal', |
|
|
|
|
|
|
383
|
|
|
widget=StringWidget( |
|
|
|
|
|
|
384
|
|
|
label=_('Fathers name'), |
|
385
|
|
|
), |
|
386
|
|
|
), |
|
387
|
|
|
StringField('CivilStatus', schemata='Personal', |
|
|
|
|
|
|
388
|
|
|
widget=StringWidget( |
|
|
|
|
|
|
389
|
|
|
label=_('Civil status'), |
|
390
|
|
|
), |
|
391
|
|
|
), |
|
392
|
|
|
ImageField('Photo', schemata='Identification', |
|
|
|
|
|
|
393
|
|
|
widget=ImageWidget( |
|
|
|
|
|
|
394
|
|
|
label=_('Photo'), |
|
395
|
|
|
), |
|
396
|
|
|
), |
|
397
|
|
|
ImageField('Feature', schemata='Identification', |
|
|
|
|
|
|
398
|
|
|
multiValue=1, |
|
399
|
|
|
widget=ImageWidget( |
|
|
|
|
|
|
400
|
|
|
label=_('Feature'), |
|
401
|
|
|
), |
|
402
|
|
|
), |
|
403
|
|
|
RecordsField('MenstrualStatus', |
|
404
|
|
|
type='menstrualstatus', |
|
405
|
|
|
widget=PatientMenstrualStatusWidget( |
|
406
|
|
|
label='Menstrual status', |
|
407
|
|
|
), |
|
408
|
|
|
), |
|
409
|
|
|
StringField('ClientPatientID', |
|
|
|
|
|
|
410
|
|
|
searchable=1, |
|
411
|
|
|
required=1, |
|
412
|
|
|
widget=StringWidget( |
|
|
|
|
|
|
413
|
|
|
label=_('Client Patient ID'), |
|
414
|
|
|
), |
|
415
|
|
|
), |
|
416
|
|
|
BooleanField('Anonymous', |
|
|
|
|
|
|
417
|
|
|
default=False, |
|
418
|
|
|
widget=BooleanWidget( |
|
|
|
|
|
|
419
|
|
|
label=_("Anonymous") |
|
420
|
|
|
), |
|
421
|
|
|
), |
|
422
|
|
|
BooleanField('DefaultResultsDistribution', |
|
|
|
|
|
|
423
|
|
|
schemata="Publication preference", |
|
424
|
|
|
default=True, |
|
425
|
|
|
widget=BooleanWidget( |
|
|
|
|
|
|
426
|
|
|
label=_("Inherit default settings"), |
|
427
|
|
|
description=_("If checked, settings will be inherited from " |
|
428
|
|
|
"the Client, so further changes in Client for this " |
|
429
|
|
|
"setting will be populated too.")) |
|
430
|
|
|
), |
|
431
|
|
|
BooleanField('AllowResultsDistribution', |
|
|
|
|
|
|
432
|
|
|
schemata="Publication preference", |
|
433
|
|
|
default=False, |
|
434
|
|
|
widget=BooleanWidget( |
|
|
|
|
|
|
435
|
|
|
label=_("Allow results distribution to this patient"), |
|
436
|
|
|
description=_("If checked, results reports will also be sent " |
|
437
|
|
|
"to the Patient automatically.")) |
|
438
|
|
|
), |
|
439
|
|
|
LinesField('PublicationPreferences', |
|
|
|
|
|
|
440
|
|
|
vocabulary_factory='bika.lims.vocabularies.CustomPubPrefVocabularyFactory', |
|
441
|
|
|
schemata='Publication preference', |
|
442
|
|
|
widget=MultiSelectionWidget( |
|
|
|
|
|
|
443
|
|
|
label=_("Publication preference"), |
|
444
|
|
|
description=_("Select the preferred channels to be used for " |
|
445
|
|
|
"sending the results reports to this Patient.")) |
|
446
|
|
|
), |
|
447
|
|
|
BooleanField('PublicationAttachmentsPermitted', |
|
|
|
|
|
|
448
|
|
|
default=False, |
|
449
|
|
|
schemata='Publication preference', |
|
450
|
|
|
widget=BooleanWidget( |
|
|
|
|
|
|
451
|
|
|
label=_("Results attachments permitted"), |
|
452
|
|
|
description=_("File attachments to results, e.g. microscope " |
|
453
|
|
|
"photos, will be included in emails to patient " |
|
454
|
|
|
"if this option is enabled")) |
|
455
|
|
|
), |
|
456
|
|
|
ReferenceField('InsuranceCompany', |
|
|
|
|
|
|
457
|
|
|
vocabulary='get_insurancecompanies', |
|
458
|
|
|
allowed_types=('InsuranceCompany',), |
|
459
|
|
|
relationship='InsuranceCompany', |
|
460
|
|
|
required=False, |
|
461
|
|
|
widget=SelectionWidget( |
|
|
|
|
|
|
462
|
|
|
format='select', |
|
463
|
|
|
label=_('Insurance Company'), |
|
464
|
|
|
), |
|
465
|
|
|
), |
|
466
|
|
|
StringField('InsuranceNumber', |
|
|
|
|
|
|
467
|
|
|
searchable=1, |
|
468
|
|
|
required=0, |
|
469
|
|
|
widget=StringWidget( |
|
|
|
|
|
|
470
|
|
|
label=_('Insurance Number'), |
|
471
|
|
|
), |
|
472
|
|
|
), |
|
473
|
|
|
BooleanField('InvoiceToInsuranceCompany', |
|
|
|
|
|
|
474
|
|
|
default=False, |
|
475
|
|
|
widget=BooleanWidget( |
|
|
|
|
|
|
476
|
|
|
label=_("Send invoices to the insurance company."), |
|
477
|
|
|
description=_("If it is checked the invoices will be send to the insurance company." |
|
478
|
|
|
" In this case the insurance number will be mandatory.")) |
|
479
|
|
|
), |
|
480
|
|
|
BooleanField('PatientAsGuarantor', |
|
|
|
|
|
|
481
|
|
|
schemata = 'Insurance', |
|
482
|
|
|
default=True, |
|
483
|
|
|
widget=BooleanWidget( |
|
|
|
|
|
|
484
|
|
|
label=_("The patient is the guarantor."), |
|
485
|
|
|
description=_("The patient and the guarantor are the same.")) |
|
486
|
|
|
), |
|
487
|
|
|
StringField('GuarantorID', |
|
|
|
|
|
|
488
|
|
|
searchable=1, |
|
489
|
|
|
schemata = 'Insurance', |
|
490
|
|
|
required=0, |
|
491
|
|
|
widget=StringWidget( |
|
|
|
|
|
|
492
|
|
|
label=_('Guarantor ID'), |
|
493
|
|
|
description=_("The ID number (Insurance Number) from the person whose contract cover the current patient.") |
|
494
|
|
|
), |
|
495
|
|
|
), |
|
496
|
|
|
StringField('GuarantorSurname', |
|
|
|
|
|
|
497
|
|
|
searchable=1, |
|
498
|
|
|
schemata = 'Insurance', |
|
499
|
|
|
required=0, |
|
500
|
|
|
widget=StringWidget( |
|
|
|
|
|
|
501
|
|
|
label=_("Guarantor's Surname"), |
|
502
|
|
|
), |
|
503
|
|
|
), |
|
504
|
|
|
StringField('GuarantorFirstname', |
|
|
|
|
|
|
505
|
|
|
searchable=1, |
|
506
|
|
|
schemata = 'Insurance', |
|
507
|
|
|
required=0, |
|
508
|
|
|
widget=StringWidget( |
|
|
|
|
|
|
509
|
|
|
label=_("Guarantor's First Name"), |
|
510
|
|
|
), |
|
511
|
|
|
), |
|
512
|
|
|
AddressField('GuarantorPostalAddress', |
|
513
|
|
|
searchable=1, |
|
514
|
|
|
schemata = 'Insurance', |
|
515
|
|
|
required=0, |
|
516
|
|
|
widget=AddressWidget( |
|
517
|
|
|
label=_("Guarantor's postal address"), |
|
518
|
|
|
), |
|
519
|
|
|
), |
|
520
|
|
|
StringField('GuarantorBusinessPhone', |
|
|
|
|
|
|
521
|
|
|
schemata = 'Insurance', |
|
522
|
|
|
widget = StringWidget( |
|
|
|
|
|
|
523
|
|
|
label=_("Guarantor's Phone (business)"), |
|
524
|
|
|
), |
|
525
|
|
|
), |
|
526
|
|
|
StringField('GuarantorHomePhone', |
|
|
|
|
|
|
527
|
|
|
schemata = 'Insurance', |
|
528
|
|
|
widget = StringWidget( |
|
|
|
|
|
|
529
|
|
|
label=_("Guarantor's Phone (home)"), |
|
530
|
|
|
), |
|
531
|
|
|
), |
|
532
|
|
|
StringField('GuarantorMobilePhone', |
|
|
|
|
|
|
533
|
|
|
schemata = 'Insurance', |
|
534
|
|
|
widget = StringWidget( |
|
|
|
|
|
|
535
|
|
|
label=_("Guarantor's Phone (mobile)"), |
|
536
|
|
|
), |
|
537
|
|
|
), |
|
538
|
|
|
BooleanField('ConsentSMS', |
|
|
|
|
|
|
539
|
|
|
default=False, |
|
540
|
|
|
widget=BooleanWidget( |
|
|
|
|
|
|
541
|
|
|
label=_('Consent to SMS'), |
|
542
|
|
|
), |
|
543
|
|
|
), |
|
544
|
|
|
ComputedField( |
|
|
|
|
|
|
545
|
|
|
'NumberOfSamples', |
|
546
|
|
|
expression="len(context.getSamples())", |
|
547
|
|
|
widget=ComputedWidget( |
|
|
|
|
|
|
548
|
|
|
visible=False |
|
549
|
|
|
), |
|
550
|
|
|
), |
|
551
|
|
|
ComputedField( |
|
|
|
|
|
|
552
|
|
|
'NumberOfSamplesCancelled', |
|
553
|
|
|
expression="len(context.getSamplesCancelled())", |
|
554
|
|
|
widget=ComputedWidget( |
|
|
|
|
|
|
555
|
|
|
visible=False |
|
556
|
|
|
), |
|
557
|
|
|
), |
|
558
|
|
|
ComputedField( |
|
|
|
|
|
|
559
|
|
|
'NumberOfSamplesOngoing', |
|
560
|
|
|
expression="len(context.getSamplesOngoing())", |
|
561
|
|
|
widget=ComputedWidget( |
|
|
|
|
|
|
562
|
|
|
visible=False |
|
563
|
|
|
), |
|
564
|
|
|
), |
|
565
|
|
|
ComputedField( |
|
|
|
|
|
|
566
|
|
|
'NumberOfSamplesPublished', |
|
567
|
|
|
expression="len(context.getSamplesPublished())", |
|
568
|
|
|
widget=ComputedWidget( |
|
|
|
|
|
|
569
|
|
|
visible=False |
|
570
|
|
|
), |
|
571
|
|
|
), |
|
572
|
|
|
ComputedField( |
|
|
|
|
|
|
573
|
|
|
'RatioOfSamplesOngoing', |
|
574
|
|
|
expression="context.getNumberOfSamplesOngoingRatio()", |
|
575
|
|
|
widget=ComputedWidget( |
|
|
|
|
|
|
576
|
|
|
visible=False |
|
577
|
|
|
), |
|
578
|
|
|
), |
|
579
|
|
|
)) |
|
580
|
|
|
|
|
581
|
|
|
schema['JobTitle'].widget.visible = False |
|
582
|
|
|
schema['Department'].widget.visible = False |
|
583
|
|
|
schema['BusinessPhone'].widget.visible = False |
|
584
|
|
|
schema['BusinessFax'].widget.visible = False |
|
585
|
|
|
# Don't make title required - it will be computed from the Person's Fullname |
|
586
|
|
|
schema['title'].required = 0 |
|
587
|
|
|
schema['title'].widget.visible = False |
|
588
|
|
|
schema['EmailAddress'].schemata = 'Personal' |
|
589
|
|
|
schema['HomePhone'].schemata = 'Personal' |
|
590
|
|
|
schema['MobilePhone'].schemata = 'Personal' |
|
591
|
|
|
schema['InsuranceCompany'].schemata = 'Insurance' |
|
592
|
|
|
schema['InsuranceNumber'].schemata = 'Insurance' |
|
593
|
|
|
schema['InvoiceToInsuranceCompany'].schemata = 'Insurance' |
|
594
|
|
|
schema.moveField('PrimaryReferrer', after='Surname') |
|
595
|
|
|
schema.moveField('PatientID', before='title') |
|
596
|
|
|
schema.moveField('ClientPatientID', after='PatientID') |
|
597
|
|
|
schema.moveField('Anonymous', before='ClientPatientID') |
|
598
|
|
|
schema.moveField('InsuranceCompany', after='PrimaryReferrer') |
|
599
|
|
|
schema.moveField('InsuranceNumber', after='InsuranceCompany') |
|
600
|
|
|
schema.moveField('PatientIdentifiers', after='InsuranceNumber') |
|
601
|
|
|
schema.moveField('Gender', after='PatientIdentifiers') |
|
602
|
|
|
schema.moveField('Age', after='Gender') |
|
603
|
|
|
schema.moveField('BirthDate', after='Age') |
|
604
|
|
|
schema.moveField('BirthDateEstimated', after='BirthDate') |
|
605
|
|
|
schema.moveField('AgeSplitted', after='BirthDateEstimated') |
|
606
|
|
|
schema.moveField('CountryState', after='AgeSplitted') |
|
607
|
|
|
schema.moveField('MenstrualStatus', after='AgeSplitted') |
|
608
|
|
|
schema.moveField('ConsentSMS', after='PrimaryReferrer') |
|
609
|
|
|
|
|
610
|
|
|
|
|
611
|
|
|
class Patient(Person): |
|
612
|
|
|
implements(IPatient) |
|
613
|
|
|
security = ClassSecurityInfo() |
|
614
|
|
|
displayContentsTab = False |
|
615
|
|
|
schema = schema |
|
616
|
|
|
|
|
617
|
|
|
_at_rename_after_creation = True |
|
618
|
|
|
|
|
619
|
|
|
def _renameAfterCreation(self, check_auto_id=False): |
|
620
|
|
|
from bika.lims.idserver import renameAfterCreation |
|
621
|
|
|
renameAfterCreation(self) |
|
622
|
|
|
|
|
623
|
|
|
def Title(self): |
|
624
|
|
|
""" Return the Fullname as title """ |
|
625
|
|
|
return safe_unicode(self.getFullname()).encode('utf-8') |
|
626
|
|
|
|
|
627
|
|
|
security.declarePublic('getPatientID') |
|
628
|
|
|
|
|
629
|
|
|
def getPatientID(self): |
|
630
|
|
|
return self.getId() |
|
631
|
|
|
|
|
632
|
|
|
security.declarePublic('getSamples') |
|
633
|
|
|
def getSamples(self): |
|
634
|
|
|
""" get all samples taken from this Patient """ |
|
635
|
|
|
l = [] |
|
636
|
|
|
for ar in self.getARs(): |
|
637
|
|
|
sample = ar.getObject().getSample() |
|
638
|
|
|
if sample: |
|
639
|
|
|
l.append(sample) |
|
640
|
|
|
return l |
|
641
|
|
|
|
|
642
|
|
|
def getSamplesCancelled(self): |
|
643
|
|
|
""" |
|
644
|
|
|
Cancelled Samples |
|
645
|
|
|
""" |
|
646
|
|
|
workflow = getToolByName(self, 'portal_workflow') |
|
647
|
|
|
l = self.getSamples() |
|
648
|
|
|
return [sample for samples in l if |
|
|
|
|
|
|
649
|
|
|
workflow.getInfoFor(analysis, 'review_state') == 'cancelled'] |
|
|
|
|
|
|
650
|
|
|
|
|
651
|
|
View Code Duplication |
def getSamplesPublished(self): |
|
|
|
|
|
|
652
|
|
|
""" |
|
653
|
|
|
Published Samples |
|
654
|
|
|
""" |
|
655
|
|
|
workflow = getToolByName(self, 'portal_workflow') |
|
656
|
|
|
ars = self.getARs() |
|
657
|
|
|
samples = [] |
|
658
|
|
|
samples_uids = [] |
|
659
|
|
|
for ar in ars: |
|
660
|
|
|
if ar.review_state == 'published': |
|
661
|
|
|
# Getting the object now |
|
662
|
|
|
sample = ar.getObject().getSample() |
|
663
|
|
|
if sample and sample.UID() not in samples_uids: |
|
664
|
|
|
samples.append(sample.UID()) |
|
665
|
|
|
samples_uids.append(sample) |
|
666
|
|
|
return samples |
|
667
|
|
|
|
|
668
|
|
View Code Duplication |
def getSamplesOngoing(self): |
|
|
|
|
|
|
669
|
|
|
""" |
|
670
|
|
|
Ongoing on Samples |
|
671
|
|
|
""" |
|
672
|
|
|
workflow = getToolByName(self, 'portal_workflow') |
|
673
|
|
|
ars = self.getARs() |
|
674
|
|
|
states = [ |
|
675
|
|
|
'verified', 'to_be_sampled', 'scheduled_sampling', 'sampled', |
|
676
|
|
|
'to_be_preserved', 'sample_due', 'sample_prep', 'sample_received', |
|
677
|
|
|
'to_be_verified', ] |
|
678
|
|
|
samples = [] |
|
679
|
|
|
samples_uids = [] |
|
680
|
|
|
for ar in ars: |
|
681
|
|
|
if ar.review_state in states: |
|
682
|
|
|
# Getting the object now |
|
683
|
|
|
sample = ar.getObject().getSample() |
|
684
|
|
|
if sample and sample.UID() not in samples_uids: |
|
685
|
|
|
samples.append(sample.UID()) |
|
686
|
|
|
samples_uids.append(sample) |
|
687
|
|
|
return samples |
|
688
|
|
|
|
|
689
|
|
|
def getNumberOfSamplesOngoingRatio(self): |
|
690
|
|
|
""" |
|
691
|
|
|
Returns the ratio between NumberOfSamplesOngoing/NumberOfSamples |
|
692
|
|
|
""" |
|
693
|
|
|
result = 0 |
|
694
|
|
|
if self.getNumberOfSamples() > 0: |
|
695
|
|
|
result = self.getNumberOfSamplesOngoing()/self.getNumberOfSamples() |
|
696
|
|
|
return result |
|
697
|
|
|
|
|
698
|
|
|
security.declarePublic('getARs') |
|
699
|
|
|
def getARs(self, analysis_state=None): |
|
700
|
|
|
bc = getToolByName(self, 'bika_catalog') |
|
701
|
|
|
ars = bc( |
|
702
|
|
|
portal_type='AnalysisRequest', |
|
703
|
|
|
getPatientUID=self.UID()) |
|
704
|
|
|
return ars |
|
705
|
|
|
|
|
706
|
|
|
def get_clients(self): |
|
707
|
|
|
## Only show clients to which we have Manage AR rights. |
|
708
|
|
|
mtool = getToolByName(self, 'portal_membership') |
|
709
|
|
|
clientfolder = self.clients |
|
710
|
|
|
clients = [] |
|
711
|
|
|
for client in clientfolder.objectValues("Client"): |
|
712
|
|
|
if not mtool.checkPermission(ManageAnalysisRequests, client): |
|
|
|
|
|
|
713
|
|
|
continue |
|
714
|
|
|
clients.append([client.UID(), client.Title()]) |
|
715
|
|
|
clients.sort(lambda x, y: cmp(x[1].lower(), y[1].lower())) |
|
|
|
|
|
|
716
|
|
|
clients.insert(0, ['', '']) |
|
717
|
|
|
return DisplayList(clients) |
|
718
|
|
|
|
|
719
|
|
|
def get_insurancecompanies(self): |
|
720
|
|
|
""" |
|
721
|
|
|
Return all the registered insurance companies. |
|
722
|
|
|
""" |
|
723
|
|
|
bsc = getToolByName(self, 'bika_setup_catalog') |
|
724
|
|
|
# Void selection |
|
725
|
|
|
ret = [('', '')] |
|
726
|
|
|
# Other selections |
|
727
|
|
|
for ic in bsc(portal_type = 'InsuranceCompany', |
|
728
|
|
|
inactive_state = 'active', |
|
729
|
|
|
sort_on = 'sortable_title'): |
|
730
|
|
|
ret.append((ic.UID, ic.Title)) |
|
731
|
|
|
return DisplayList(ret) |
|
732
|
|
|
|
|
733
|
|
|
def getPatientIdentifiersStr(self): |
|
734
|
|
|
ids = self.getPatientIdentifiers() |
|
735
|
|
|
idsstr = '' |
|
736
|
|
|
for idx in ids: |
|
737
|
|
|
idsstr += idsstr == '' and idx.get('Identifier', '') or (', ' + idx.get('Identifier', '')) |
|
738
|
|
|
return idsstr |
|
739
|
|
|
#return self.getSendersPatientID()+" "+self.getSendersCaseID()+" "+self.getSendersSpecimenID() |
|
740
|
|
|
|
|
741
|
|
|
def getPatientIdentifiersStrHtml(self): |
|
742
|
|
|
ids = self.getPatientIdentifiers() |
|
743
|
|
|
idsstr = '<table cellpadding="0" cellspacing="0" border="0" class="patientsidentifiers" style="text-align:left;width: 100%;"><tr><td>' |
|
744
|
|
|
for idx in ids: |
|
745
|
|
|
idsstr += "<tr><td>" + idx['IdentifierType'] + ':</td><td>' + idx['Identifier'] + "</td></tr>" |
|
746
|
|
|
return "</table>" + idsstr |
|
747
|
|
|
|
|
748
|
|
|
def getAgeSplitted(self): |
|
749
|
|
|
|
|
750
|
|
|
if (self.getBirthDate()): |
|
751
|
|
|
dob = DT2dt(self.getBirthDate()).replace(tzinfo=None) |
|
752
|
|
|
now = datetime.today() |
|
753
|
|
|
|
|
754
|
|
|
currentday = now.day |
|
755
|
|
|
currentmonth = now.month |
|
756
|
|
|
currentyear = now.year |
|
757
|
|
|
birthday = dob.day |
|
758
|
|
|
birthmonth = dob.month |
|
759
|
|
|
birthyear = dob.year |
|
760
|
|
|
ageday = currentday - birthday |
|
761
|
|
|
agemonth = 0 |
|
762
|
|
|
ageyear = 0 |
|
763
|
|
|
months31days = [1, 3, 5, 7, 8, 10, 12] |
|
764
|
|
|
|
|
765
|
|
|
if (ageday < 0): |
|
766
|
|
|
currentmonth -= 1 |
|
767
|
|
|
if (currentmonth < 1): |
|
768
|
|
|
currentyear -= 1 |
|
769
|
|
|
currentmonth = currentmonth + 12 |
|
770
|
|
|
|
|
771
|
|
|
dayspermonth = 30 |
|
772
|
|
|
if currentmonth in months31days: |
|
773
|
|
|
dayspermonth = 31 |
|
774
|
|
|
elif currentmonth == 2: |
|
775
|
|
|
dayspermonth = 28 |
|
776
|
|
|
if(currentyear % 4 == 0 |
|
777
|
|
|
and (currentyear % 100 > 0 or currentyear % 400 == 0)): |
|
778
|
|
|
dayspermonth += 1 |
|
779
|
|
|
|
|
780
|
|
|
ageday = ageday + dayspermonth |
|
781
|
|
|
|
|
782
|
|
|
agemonth = currentmonth - birthmonth |
|
783
|
|
|
if (agemonth < 0): |
|
784
|
|
|
currentyear -= 1 |
|
785
|
|
|
agemonth = agemonth + 12 |
|
786
|
|
|
|
|
787
|
|
|
ageyear = currentyear - birthyear |
|
788
|
|
|
|
|
789
|
|
|
return [{'year': ageyear, |
|
790
|
|
|
'month': agemonth, |
|
791
|
|
|
'day': ageday}] |
|
792
|
|
|
else: |
|
793
|
|
|
return [{'year': '', |
|
794
|
|
|
'month': '', |
|
795
|
|
|
'day': ''}] |
|
796
|
|
|
|
|
797
|
|
|
def getAge(self): |
|
798
|
|
|
return self.getAgeSplitted()[0]['year'] |
|
799
|
|
|
|
|
800
|
|
|
def getAgeSplittedStr(self): |
|
801
|
|
|
splitted = self.getAgeSplitted()[0] |
|
802
|
|
|
arr = [] |
|
803
|
|
|
arr.append(splitted['year'] and str(splitted['year']) + 'y' or '') |
|
804
|
|
|
arr.append(splitted['month'] and str(splitted['month']) + 'm' or '') |
|
805
|
|
|
arr.append(splitted['day'] and str(splitted['day']) + 'd' or '') |
|
806
|
|
|
return ' '.join(arr) |
|
807
|
|
|
|
|
808
|
|
|
def getCountryState(self): |
|
809
|
|
|
return self.getField('CountryState').get(self) \ |
|
810
|
|
|
if self.getField('CountryState').get(self) \ |
|
811
|
|
|
else self.getPhysicalAddress() |
|
812
|
|
|
|
|
813
|
|
|
def getGuarantorID(self): |
|
814
|
|
|
""" |
|
815
|
|
|
If the patient is the guarantor, all the fields related with the guarantor are going to have the same value as |
|
816
|
|
|
the current patient fields. |
|
817
|
|
|
:return: The guarantor ID (insurance number) from |
|
818
|
|
|
""" |
|
819
|
|
|
return self.getInsuranceNumber() if self.getPatientAsGuarantor() else self.getField('GuarantorID').get(self) |
|
820
|
|
|
|
|
821
|
|
|
def getGuarantorSurname(self): |
|
822
|
|
|
""" |
|
823
|
|
|
If the patient is the guarantor, all the fields related with the guarantor are going to have the same value as |
|
824
|
|
|
the current patient fields. |
|
825
|
|
|
""" |
|
826
|
|
|
return self.getSurname() if self.getPatientAsGuarantor() else self.getField('GuarantorSurname').get(self) |
|
827
|
|
|
|
|
828
|
|
|
def getGuarantorFirstname(self): |
|
829
|
|
|
""" |
|
830
|
|
|
If the patient is the guarantor, all the fields related with the guarantor are going to have the same value as |
|
831
|
|
|
the current patient fields. |
|
832
|
|
|
""" |
|
833
|
|
|
return self.getFirstname() if self.getPatientAsGuarantor() else self.getField('GuarantorFirstname').get(self) |
|
834
|
|
|
|
|
835
|
|
|
def getGuarantorPostalAddress(self): |
|
836
|
|
|
""" |
|
837
|
|
|
If the patient is the guarantor, all the fields related with the guarantor are going to have the same value as |
|
838
|
|
|
the current patient fields. |
|
839
|
|
|
""" |
|
840
|
|
|
return self.getPostalAddress() \ |
|
841
|
|
|
if self.getPatientAsGuarantor() \ |
|
842
|
|
|
else self.getField('GuarantorPostalAddress').get(self) |
|
843
|
|
|
|
|
844
|
|
|
def getGuarantorBusinessPhone(self): |
|
845
|
|
|
""" |
|
846
|
|
|
If the patient is the guarantor, all the fields related with the guarantor are going to have the same value as |
|
847
|
|
|
the current patient fields. |
|
848
|
|
|
""" |
|
849
|
|
|
return self.getBusinessPhone() \ |
|
850
|
|
|
if self.getPatientAsGuarantor() \ |
|
851
|
|
|
else self.getField('GuarantorBusinessPhone').get(self) |
|
852
|
|
|
|
|
853
|
|
|
def getGuarantorHomePhone(self): |
|
854
|
|
|
""" |
|
855
|
|
|
If the patient is the guarantor, all the fields related with the guarantor are going to have the same value as |
|
856
|
|
|
the current patient fields. |
|
857
|
|
|
""" |
|
858
|
|
|
return self.getHomePhone() if self.getPatientAsGuarantor() else self.getField('GuarantorHomePhone').get(self) |
|
859
|
|
|
|
|
860
|
|
|
def getGuarantorMobilePhone(self): |
|
861
|
|
|
""" |
|
862
|
|
|
If the patient is the guarantor, all the fields related with the guarantor are going to have the same value as |
|
863
|
|
|
the current patient fields. |
|
864
|
|
|
""" |
|
865
|
|
|
return self.getMobilePhone() \ |
|
866
|
|
|
if self.getPatientAsGuarantor() \ |
|
867
|
|
|
else self.getField('GuarantorMobilePhone').get(self) |
|
868
|
|
|
|
|
869
|
|
|
def getEthnicitiesVocabulary(self, instance=None): |
|
870
|
|
|
""" |
|
871
|
|
|
Obtain all the ethnicities registered in the system and returns them as a list |
|
872
|
|
|
""" |
|
873
|
|
|
bsc = getToolByName(self, 'bika_setup_catalog') |
|
874
|
|
|
items = [(c.UID, c.Title) \ |
|
875
|
|
|
for c in bsc(portal_type='Ethnicity', |
|
876
|
|
|
inactive_state = 'active')] |
|
877
|
|
|
items.sort(lambda x,y:cmp(x[1], y[1])) |
|
|
|
|
|
|
878
|
|
|
items.insert(0, ('', t(_('')))) |
|
|
|
|
|
|
879
|
|
|
return DisplayList(items) |
|
880
|
|
|
|
|
881
|
|
|
def getPatientAnalysisRequestsURL(self): |
|
882
|
|
|
""" |
|
883
|
|
|
Return the url pointing to the analysis requests page of the patient |
|
884
|
|
|
:return: patient's analysis request url |
|
885
|
|
|
""" |
|
886
|
|
|
return "/".join([self.absolute_url(), 'analysisrequests']) |
|
887
|
|
|
|
|
888
|
|
|
# TODO This function will will be removed on v319 |
|
889
|
|
|
def getEthnicity(self): |
|
890
|
|
|
""" |
|
891
|
|
|
This function exists because we are changing the construction of ethnicities. Until now, ethnicities options were |
|
892
|
|
|
hand-coded but now they are a new content type. So we need to pass all patient's ethnicity values, but to do |
|
893
|
|
|
such thing, we need to create new ethnicity types on upgrade step and edit patient ethnicity field to relate them |
|
894
|
|
|
with its corresponding ethnicity content type. |
|
895
|
|
|
:return: |
|
896
|
|
|
""" |
|
897
|
|
|
return self.getEthnicity_Obj() |
|
898
|
|
|
|
|
899
|
|
|
# TODO This function will be removed on v319 |
|
900
|
|
|
def setEthnicity(self, value): |
|
901
|
|
|
self.setEthnicity_Obj(value) |
|
902
|
|
|
|
|
903
|
|
|
def getDocuments(self): |
|
904
|
|
|
""" |
|
905
|
|
|
Return all the multifile objects related with the patient |
|
906
|
|
|
""" |
|
907
|
|
|
return self.objectValues('Multifile') |
|
908
|
|
|
|
|
909
|
|
|
def SearchableText(self): |
|
910
|
|
|
""" |
|
911
|
|
|
Override searchable text logic based on the requirements. |
|
912
|
|
|
|
|
913
|
|
|
This method constructs a text blob which contains all full-text |
|
914
|
|
|
searchable text for this content item. |
|
915
|
|
|
https://docs.plone.org/develop/plone/searching_and_indexing/indexing.html#full-text-searching |
|
916
|
|
|
""" |
|
917
|
|
|
|
|
918
|
|
|
# Speed up string concatenation ops by using a buffer |
|
919
|
|
|
entries = [] |
|
920
|
|
|
|
|
921
|
|
|
# plain text fields we index from ourself, |
|
922
|
|
|
# a list of accessor methods of the class |
|
923
|
|
|
plain_text_fields = ("Title", "getFullname", "getId", |
|
924
|
|
|
"getPrimaryReferrerID", "getPrimaryReferrerTitle", "getClientPatientID") |
|
925
|
|
|
|
|
926
|
|
|
def read(accessor): |
|
927
|
|
|
""" |
|
928
|
|
|
Call a class accessor method to give a value for certain Archetypes |
|
929
|
|
|
field. |
|
930
|
|
|
""" |
|
931
|
|
|
try: |
|
932
|
|
|
value = accessor() |
|
933
|
|
|
except: |
|
934
|
|
|
value = "" |
|
935
|
|
|
|
|
936
|
|
|
if value is None: |
|
937
|
|
|
value = "" |
|
938
|
|
|
|
|
939
|
|
|
return value |
|
940
|
|
|
|
|
941
|
|
|
# Concatenate plain text fields as they are |
|
942
|
|
|
for f in plain_text_fields: |
|
943
|
|
|
accessor = getattr(self, f) |
|
944
|
|
|
value = read(accessor) |
|
945
|
|
|
entries.append(value) |
|
946
|
|
|
|
|
947
|
|
|
# Adding HTML Fields to SearchableText can be uncommented if necessary |
|
948
|
|
|
# transforms = getToolByName(self, 'portal_transforms') |
|
949
|
|
|
# |
|
950
|
|
|
# # Run HTML valued fields through text/plain conversion |
|
951
|
|
|
# for f in html_fields: |
|
952
|
|
|
# accessor = getattr(self, f) |
|
953
|
|
|
# value = read(accessor) |
|
954
|
|
|
# |
|
955
|
|
|
# if value != "": |
|
956
|
|
|
# stream = transforms.convertTo('text/plain', value, mimetype='text/html') |
|
957
|
|
|
# value = stream.getData() |
|
958
|
|
|
# |
|
959
|
|
|
# entries.append(value) |
|
960
|
|
|
|
|
961
|
|
|
# Plone accessor methods assume utf-8 |
|
962
|
|
|
def convertToUTF8(text): |
|
963
|
|
|
if type(text) == unicode: |
|
|
|
|
|
|
964
|
|
|
return text.encode("utf-8") |
|
965
|
|
|
return text |
|
966
|
|
|
|
|
967
|
|
|
entries = [convertToUTF8(entry) for entry in entries] |
|
968
|
|
|
|
|
969
|
|
|
# Concatenate all strings to one text blob |
|
970
|
|
|
return " ".join(entries) |
|
971
|
|
|
|
|
972
|
|
|
|
|
973
|
|
|
# schemata.finalizeATCTSchema(schema, folderish=True, moveDiscussion=False) |
|
974
|
|
|
atapi.registerType(Patient, PROJECTNAME) |
|
975
|
|
|
|
senaite /
senaite.health
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