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# -*- coding: utf-8 -*- |
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# |
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# This file is part of SENAITE.HEALTH. |
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# |
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# SENAITE.HEALTH is free software: you can redistribute it and/or modify it |
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# under the terms of the GNU General Public License as published by the Free |
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# Software Foundation, version 2. |
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# |
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# This program is distributed in the hope that it will be useful, but WITHOUT |
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# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS |
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# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more |
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# details. |
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# |
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# You should have received a copy of the GNU General Public License along with |
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# this program; if not, write to the Free Software Foundation, Inc., 51 |
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# Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. |
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# |
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# Copyright 2018-2019 by it's authors. |
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# Some rights reserved, see README and LICENSE. |
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""" http://pypi.python.org/pypi/archetypes.schemaextender |
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""" |
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from Products.ATContentTypes.interface import IATDocument |
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from Products.Archetypes.interfaces import IVocabulary |
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from Products.Archetypes.public import * |
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from Products.Archetypes.public import BooleanWidget |
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from Products.Archetypes.references import HoldingReference |
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from Products.CMFCore.interfaces import ISiteRoot |
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from Products.CMFCore.utils import getToolByName |
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from bika.lims.browser.widgets import RecordsWidget |
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from archetypes.schemaextender.interfaces import ISchemaExtender |
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from archetypes.schemaextender.interfaces import IOrderableSchemaExtender |
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from archetypes.schemaextender.interfaces import ISchemaModifier |
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from bika.lims.fields import * |
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from bika.lims.interfaces import IBatch |
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from bika.lims.browser.widgets import DateTimeWidget |
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from bika.lims.browser.widgets import ReferenceWidget |
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from bika.health import bikaMessageFactory as _ |
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from bika.lims import bikaMessageFactory as _b |
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from bika.health.widgets import * |
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from plone.indexer.decorator import indexer |
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from zope.component import adapts |
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from zope.interface import implements |
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from bika.health.widgets.casepatientconditionwidget import CasePatientConditionWidget |
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try: |
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from zope.component.hooks import getSite |
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except: |
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# Plone < 4.3 |
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from zope.app.component.hooks import getSite |
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class getCaseSyndromicClassification: |
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implements(IVocabulary) |
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def getDisplayList(self, instance): |
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""" return all case syndromic classifications """ |
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bsc = getToolByName(instance, 'bika_setup_catalog') |
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ret = [] |
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for p in bsc(portal_type = 'CaseSyndromicClassification', |
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is_active = True, |
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sort_on = 'sortable_title'): |
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ret.append((p.UID, p.Title)) |
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return DisplayList(ret) |
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class getCaseStatus: |
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implements(IVocabulary) |
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def getDisplayList(self, instance): |
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""" return all case statuses""" |
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bsc = getToolByName(instance, 'bika_setup_catalog') |
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ret = [] |
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for p in bsc(portal_type = 'CaseStatus', |
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is_active = True, |
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sort_on = 'sortable_title'): |
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ret.append((p.Title, p.Title)) |
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return DisplayList(ret) |
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class getCaseOutcome: |
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implements(IVocabulary) |
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def getDisplayList(self, instance): |
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""" return all case Outcomes""" |
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bsc = getToolByName(instance, 'bika_setup_catalog') |
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ret = [] |
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for p in bsc(portal_type = 'CaseOutcome', |
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is_active = True, |
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sort_on = 'sortable_title'): |
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ret.append((p.Title, p.Title)) |
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return DisplayList(ret) |
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@indexer(IBatch) |
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def getPatientID(instance): |
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item = instance.Schema()['Patient'].get(instance) |
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value = item and item.getPatientID() or '' |
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return value |
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@indexer(IBatch) |
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def getPatientUID(instance): |
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item = instance.Schema()['Patient'].get(instance) |
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value = item and item.UID() or '' |
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return value |
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@indexer(IBatch) |
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def getPatientTitle(instance): |
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return PatientTitleGetter(instance) |
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def PatientTitleGetter(obj): |
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item = obj.Schema()['Patient'].get(obj) |
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value = item and item.Title() or '' |
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return value |
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@indexer(IBatch) |
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def getDoctorID(instance): |
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item = instance.Schema()['Doctor'].get(instance) |
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value = item and item.Schema()['DoctorID'].get(item) or '' |
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return value |
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@indexer(IBatch) |
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def getDoctorUID(instance): |
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item = instance.Schema()['Doctor'].get(instance) |
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value = item and item.UID() or '' |
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return value |
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@indexer(IBatch) |
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def getDoctorTitle(instance): |
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item = instance.Schema()['Doctor'].get(instance) |
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value = item and item.Title() or '' |
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return value |
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@indexer(IBatch) |
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def getClientPatientID(instance): |
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return ClientPatientIDGetter(instance) |
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def ClientPatientIDGetter(obj): |
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item = obj.Schema()['Patient'].get(obj) |
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value = item and item.getClientPatientID() or '' |
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return value |
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class BatchSchemaExtender(object): |
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adapts(IBatch) |
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implements(IOrderableSchemaExtender) |
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fields = [ |
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# ExtComputedField('ClientID', |
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# expression="context.Schema()['Client'].get(context) and context.Schema()['Client'].get(context).ID() or None", |
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# ), |
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# ExtComputedField('ClientUID', |
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# expression="context.Schema()['Client'].get(context) and context.Schema()['Client'].get(context).UID() or None", |
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# ), |
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# ExtComputedField('ClientTitle', |
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# expression="context.Schema()['Client'].get(context) and context.Schema()['Client'].get(context).Title() or None", |
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# ), |
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ExtReferenceField('Doctor', |
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required=1, |
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multiValued=0, |
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allowed_types = ('Doctor',), |
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referenceClass = HoldingReference, |
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relationship = 'BatchDoctor', |
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widget=ReferenceWidget( |
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label=_("Doctor"), |
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description="", |
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render_own_label=False, |
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visible={'edit': 'visible', 'view': 'visible'}, |
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base_query={'is_active': True}, |
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catalog_name='portal_catalog', |
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showOn=True, |
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colModel = [{'columnName':'DoctorID','width':'20','label':_('Doctor ID')}, |
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{'columnName':'Title','width':'80','label':_('Full Name')}, |
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], |
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add_button={ |
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'visible': True, |
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'url': 'doctors/portal_factory/Doctor/new/edit', |
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'return_fields': ['Firstname', 'Surname'], |
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'js_controllers': ['#doctor-base-edit',], |
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'overlay_handler': 'HealthDoctorOverlayHandler', |
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}, |
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edit_button={ |
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'visible': True, |
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# url with the root to create/edit a object. |
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'url': 'doctors/portal_factory/Doctor', |
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'return_fields': ['Firstname', 'Surname'], |
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'js_controllers': ['#doctor-base-edit',], |
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'overlay_handler': 'HealthDoctorOverlayHandler', |
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} |
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), |
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), |
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# ExtComputedField('DoctorID', |
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# expression="context.Schema()['Doctor'].get(context) and context.Schema()['Doctor'].get(context).ID() or None", |
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# ), |
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# ExtComputedField('DoctorUID', |
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# expression="context.Schema()['Doctor'].get(context) and context.Schema()['Doctor'].get(context).UID() or None", |
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# ), |
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# ExtComputedField('DoctorTitle', |
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# expression="context.Schema()['Doctor'].get(context) and context.Schema()['Doctor'].get(context).Title() or None", |
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# ), |
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ExtReferenceField('Patient', |
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required = 1, |
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multiValued=0, |
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allowed_types = ('Patient',), |
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referenceClass = HoldingReference, |
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relationship = 'BatchPatient', |
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widget=ReferenceWidget( |
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label=_("Patient"), |
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description="", |
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render_own_label=False, |
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visible={'edit': 'visible', |
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'view': 'visible'}, |
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catalog_name='bikahealth_catalog_patient_listing', |
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search_fields=('listing_searchable_text',), |
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base_query={'is_active': True, |
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'sort_limit': 50, |
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'sort_on': 'getPatientID', |
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'sort_order': 'ascending'}, |
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colModel=[ |
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{'columnName': "getPatientID", |
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'width': '30', |
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'label': _('PID'), |
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'align': 'left'}, |
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{'columnName': "getClientPatientID", |
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'width': '30', |
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'label': _('CPID'), |
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'align': 'left'}, |
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{'columnName': 'Title', |
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'width': '30', |
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'label': _('Title'), |
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'align': 'left'}, |
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], |
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showOn=True, |
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add_button={ |
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'visible': True, |
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'url': 'patients/portal_factory/Patient/new/edit', |
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'return_fields': ['Firstname', 'Surname'], |
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'js_controllers': ['#patient-base-edit',], |
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'overlay_handler': 'HealthPatientOverlayHandler', |
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}, |
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edit_button={ |
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'visible': True, |
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# url with the root to create/edit a object. |
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'url': 'patients/portal_factory/Patient', |
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'return_fields': ['Firstname', 'Surname'], |
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'js_controllers': ['#patient-base-edit',], |
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'overlay_handler': 'HealthPatientOverlayHandler', |
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} |
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), |
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), |
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# ExtComputedField('PatientID', |
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# expression="context.Schema()['Patient'].get(context) and context.Schema()['Patient'].get(context).ID() or None", |
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# ), |
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# ExtComputedField('PatientUID', |
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# expression="context.Schema()['Patient'].get(context) and context.Schema()['Patient'].get(context).UID() or None", |
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# ), |
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# ExtComputedField('PatientTitle', |
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# expression="context.Schema()['Patient'].get(context) and context.Schema()['Patient'].get(context).Title() or None", |
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# ), |
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ExtDateTimeField('OnsetDate', |
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widget=DateTimeWidget( |
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label=_('Onset Date'), |
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), |
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), |
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ExtStringField('PatientBirthDate', |
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widget=StringWidget( |
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visible=False, |
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), |
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), |
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ExtRecordsField('PatientAgeAtCaseOnsetDate', |
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widget=SplittedDateWidget( |
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label=_('Patient Age at Case Onset Date'), |
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), |
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), |
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ExtBooleanField('OnsetDateEstimated', |
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default=False, |
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widget=BooleanWidget( |
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label = _("Onset Date Estimated"), |
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), |
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), |
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ExtRecordsField('ProvisionalDiagnosis', |
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type='provisionaldiagnosis', |
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subfields=('Code', 'Title', 'Description', 'Onset'), |
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# Temporary fix: https://github.com/bikalabs/bika.health/issues/89 |
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#required_subfields=('Title'), |
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subfield_sizes={'Code': 7, |
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'Title': 20, |
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'Description': 35, |
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'Onset': 10}, |
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subfield_labels={'Code': _('Code'), |
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'Title': _('Provisional diagnosis'), |
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'Description': _('Description'), |
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'Onset': _('Onset')}, |
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subfield_types={'Onset': 'datepicker_nofuture'}, |
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widget=RecordsWidget( |
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label='Provisional diagnosis', |
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combogrid_options={ |
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'Title': { |
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'colModel': [{'columnName':'Code', 'width':'10', 'label':_('Code')}, |
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{'columnName':'Title', 'width':'30', 'label':_('Title')}, |
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{'columnName':'Description', 'width':'60', 'label':_('Description')}], |
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'url': 'getsymptomsbytitle', |
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'showOn': True, |
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'width': "650px", |
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}, |
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'Code': { |
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'colModel': [{'columnName':'Code', 'width':'10', 'label':_('Code')}, |
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{'columnName':'Title', 'width':'30', 'label':_('Title')}, |
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{'columnName':'Description', 'width':'60', 'label':_('Description')}], |
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'url': 'getsymptomsbycode', |
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'showOn': True, |
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'width': "650px", |
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}, |
|
308
|
|
|
'Description': { |
|
309
|
|
|
'colModel': [{'columnName':'Code', 'width':'10', 'label':_('Code')}, |
|
310
|
|
|
{'columnName':'Title', 'width':'30', 'label':_('Title')}, |
|
311
|
|
|
{'columnName':'Description', 'width':'60', 'label':_('Description')}], |
|
312
|
|
|
'url': 'getsymptomsbydesc', |
|
313
|
|
|
'showOn': True, |
|
314
|
|
|
'width': "650px", |
|
315
|
|
|
}, |
|
316
|
|
|
}, |
|
317
|
|
|
), |
|
318
|
|
|
), |
|
319
|
|
|
ExtTextField('AdditionalNotes', |
|
320
|
|
|
default_content_type='text/plain', |
|
321
|
|
|
allowable_content_types = ('text/plain', ), |
|
322
|
|
|
default_output_type="text/plain", |
|
323
|
|
|
widget=TextAreaWidget( |
|
324
|
|
|
label=_('Additional notes'), |
|
325
|
|
|
), |
|
326
|
|
|
), |
|
327
|
|
|
ExtLinesField('CaseStatus', |
|
328
|
|
|
vocabulary=getCaseStatus(), |
|
329
|
|
|
widget=MultiSelectionWidget( |
|
330
|
|
|
format='checkbox', |
|
331
|
|
|
label=_("Case status") |
|
332
|
|
|
), |
|
333
|
|
|
), |
|
334
|
|
|
ExtLinesField('CaseOutcome', |
|
335
|
|
|
vocabulary=getCaseOutcome(), |
|
336
|
|
|
widget=MultiSelectionWidget( |
|
337
|
|
|
format='checkbox', |
|
338
|
|
|
label=_("Case outcome") |
|
339
|
|
|
), |
|
340
|
|
|
), |
|
341
|
|
|
ExtRecordsField('Symptoms', |
|
342
|
|
|
type='symptoms', |
|
343
|
|
|
subfields=('UID', 'Title', 'Description', 'Severity'), |
|
344
|
|
|
widget=CaseSymptomsWidget( |
|
345
|
|
|
label='Symptoms', |
|
346
|
|
|
), |
|
347
|
|
|
), |
|
348
|
|
|
ExtRecordsField('AetiologicAgents', |
|
349
|
|
|
type='aetiologicagents', |
|
350
|
|
|
subfields=('Title', 'Description', 'Subtype'), |
|
351
|
|
|
subfield_sizes={'Title': 15, |
|
352
|
|
|
'Description': 25, |
|
353
|
|
|
'Subtype': 10}, |
|
354
|
|
|
subfield_labels={'Title': _('Aetiologic agent'), |
|
355
|
|
|
'Description': _b('Description'), |
|
356
|
|
|
'Subtype': _('Subtype')}, |
|
357
|
|
|
# Temporary fix: https://github.com/bikalabs/bika.health/issues/89 |
|
358
|
|
|
# required_subfields=('Title'), |
|
359
|
|
|
widget=RecordsWidget( |
|
360
|
|
|
label='Aetiologic agents', |
|
361
|
|
|
combogrid_options={ |
|
362
|
|
|
'Title': { |
|
363
|
|
|
'colModel': [{'columnName':'Title', 'width':'30', 'label':_('Aetiologic agent')}, |
|
364
|
|
|
{'columnName':'Description', 'width':'60', 'label':_b('Description')}, |
|
365
|
|
|
{'columnName':'Subtype', 'width':'30', 'label':_('Subtype')}], |
|
366
|
|
|
'url': 'getaetiologicagents', |
|
367
|
|
|
'showOn': True, |
|
368
|
|
|
'width': "650px", |
|
369
|
|
|
}, |
|
370
|
|
|
}, |
|
371
|
|
|
), |
|
372
|
|
|
), |
|
373
|
|
|
ExtIntegerField('HoursFasting', |
|
374
|
|
|
required = 0, |
|
375
|
|
|
widget=IntegerWidget( |
|
376
|
|
|
label=_('Hours fasting'), |
|
377
|
|
|
), |
|
378
|
|
|
), |
|
379
|
|
|
ExtRecordsField('PatientCondition', |
|
380
|
|
|
widget=CasePatientConditionWidget( |
|
381
|
|
|
label='Patient condition', |
|
382
|
|
|
), |
|
383
|
|
|
), |
|
384
|
|
|
ExtRecordsField('MenstrualStatus', |
|
385
|
|
|
widget=CaseMenstrualStatusWidget( |
|
386
|
|
|
label='Menstrual status', |
|
387
|
|
|
), |
|
388
|
|
|
), |
|
389
|
|
|
ExtRecordsField('BasalBodyTemperature', |
|
390
|
|
|
widget=CaseBasalBodyTempWidget( |
|
391
|
|
|
label='Basal body temperature', |
|
392
|
|
|
), |
|
393
|
|
|
), |
|
394
|
|
|
ExtStringField( |
|
395
|
|
|
'ClientPatientID', |
|
396
|
|
|
required=0, |
|
397
|
|
|
widget=ReferenceWidget( |
|
398
|
|
|
label=_b("Client Patient ID"), |
|
399
|
|
|
size=20, |
|
400
|
|
|
visible={'edit': 'visible', |
|
401
|
|
|
'view': 'visible', |
|
402
|
|
|
'add': 'edit'}, |
|
403
|
|
|
catalog_name='bikahealth_catalog_patient_listing', |
|
404
|
|
|
portal_types=('Patient',), |
|
405
|
|
|
search_fields=('getClientPatientID',), |
|
406
|
|
|
base_query={'is_active': True, |
|
407
|
|
|
'sort_limit': 50, |
|
408
|
|
|
'sort_on': 'getClientPatientID', |
|
409
|
|
|
'sort_order': 'ascending'}, |
|
410
|
|
|
force_all = False, |
|
411
|
|
|
colModel = [ |
|
412
|
|
|
{'columnName': "getPatientID", |
|
413
|
|
|
'width': '30', |
|
414
|
|
|
'label': _('PID'), |
|
415
|
|
|
'align': 'left'}, |
|
416
|
|
|
{'columnName': "getClientPatientID", |
|
417
|
|
|
'width': '30', |
|
418
|
|
|
'label': _('CPID'), |
|
419
|
|
|
'align': 'left'}, |
|
420
|
|
|
{'columnName': 'Title', |
|
421
|
|
|
'width': '30', |
|
422
|
|
|
'label': _('Fullname'), |
|
423
|
|
|
'align': 'left'}, |
|
424
|
|
|
# UID is required in colModel |
|
425
|
|
|
{'columnName': 'UID', 'hidden': True}, |
|
426
|
|
|
], |
|
427
|
|
|
ui_item="getClientPatientID", |
|
428
|
|
|
showOn=False, |
|
429
|
|
|
), |
|
430
|
|
|
), |
|
431
|
|
|
] |
|
432
|
|
|
|
|
433
|
|
|
def __init__(self, context): |
|
434
|
|
|
self.context = context |
|
435
|
|
|
|
|
436
|
|
|
def getOrder(self, schematas): |
|
437
|
|
|
schematas['default'] = ['id', |
|
438
|
|
|
'title', |
|
439
|
|
|
'description', |
|
440
|
|
|
'BatchID', |
|
441
|
|
|
'ClientPatientID', |
|
442
|
|
|
'Patient', |
|
443
|
|
|
# 'PatientID', |
|
444
|
|
|
# 'PatientUID', |
|
445
|
|
|
# 'PatientTitle', |
|
446
|
|
|
'Client', |
|
447
|
|
|
# 'ClientID', |
|
448
|
|
|
# 'ClientUID', |
|
449
|
|
|
# 'ClientTitle', |
|
450
|
|
|
'ClientBatchID', |
|
451
|
|
|
'Doctor', |
|
452
|
|
|
# 'DoctorID', |
|
453
|
|
|
# 'DoctorUID', |
|
454
|
|
|
# 'DoctorTitle', |
|
455
|
|
|
'BatchDate', |
|
456
|
|
|
'OnsetDate', |
|
457
|
|
|
'PatientAgeAtCaseOnsetDate', |
|
458
|
|
|
'OnsetDateEstimated', |
|
459
|
|
|
'HoursFasting', |
|
460
|
|
|
'PatientCondition', |
|
461
|
|
|
'BasalBodyTemperature', |
|
462
|
|
|
'MenstrualStatus', |
|
463
|
|
|
'Symptoms', |
|
464
|
|
|
'ProvisionalDiagnosis', |
|
465
|
|
|
'CaseStatus', |
|
466
|
|
|
'CaseOutcome', |
|
467
|
|
|
'AetiologicAgents', |
|
468
|
|
|
'AdditionalNotes', |
|
469
|
|
|
'Remarks', |
|
470
|
|
|
'PatientBirthDate', |
|
471
|
|
|
'BatchLabels',] |
|
472
|
|
|
return schematas |
|
473
|
|
|
|
|
474
|
|
|
def getFields(self): |
|
475
|
|
|
return self.fields |
|
476
|
|
|
|
|
477
|
|
|
|
|
478
|
|
|
class BatchSchemaModifier(object): |
|
479
|
|
|
adapts(IBatch) |
|
480
|
|
|
implements(ISchemaModifier) |
|
481
|
|
|
|
|
482
|
|
|
def __init__(self, context): |
|
483
|
|
|
self.context = context |
|
484
|
|
|
|
|
485
|
|
|
def fiddle(self, schema): |
|
486
|
|
|
schema['title'].required = False |
|
487
|
|
|
schema['title'].widget.visible = False |
|
488
|
|
|
schema['description'].required = False |
|
489
|
|
|
schema['description'].widget.visible = False |
|
490
|
|
|
schema['BatchLabels'].widget.visible = False |
|
491
|
|
|
schema['ClientBatchID'].widget.label = _("Client Case ID") |
|
492
|
|
|
schema['BatchDate'].widget.visible = False |
|
493
|
|
|
schema['Doctor'].required = self.isCaseDoctorIsMandatory() |
|
494
|
|
|
return schema |
|
495
|
|
|
|
|
496
|
|
|
def isCaseDoctorIsMandatory(self): |
|
497
|
|
|
""" |
|
498
|
|
|
Returns whether the Doctor field is mandatory or not in cases object. |
|
499
|
|
|
:return: boolean |
|
500
|
|
|
""" |
|
501
|
|
|
if hasattr(self.context, 'bika_setup'): |
|
502
|
|
|
return self.context.bika_setup.CaseDoctorIsMandatory |
|
503
|
|
|
|
|
504
|
|
|
# If this object is being created right now, then it doesn't have bika_setup, get bika_setup from site root. |
|
505
|
|
|
plone = getSite() |
|
506
|
|
|
if not plone: |
|
507
|
|
|
plone = get_site_from_context(self.context) |
|
508
|
|
|
return plone.bika_setup.CaseDoctorIsMandatory |
|
509
|
|
|
|
|
510
|
|
|
|
|
511
|
|
|
def get_site_from_context(context): |
|
512
|
|
|
""" |
|
513
|
|
|
Sometimes getSite() method can return None, in that case we can find site root in parents of an object. |
|
514
|
|
|
:param context: context to go through parents of, until we reach the site root |
|
515
|
|
|
:return: site root |
|
516
|
|
|
""" |
|
517
|
|
|
if not ISiteRoot.providedBy(context): |
|
518
|
|
|
return context |
|
519
|
|
|
else: |
|
520
|
|
|
for item in context.aq_chain: |
|
521
|
|
|
if ISiteRoot.providedBy(item): |
|
522
|
|
|
return item |
|
523
|
|
|
|
senaite /
senaite.health
