bika.health.setupdata.Patients.Import() - Code Metrics - senaite/senaite.health - Measure and Improve Code Quality continuously with Scrutinizer

bika.health.setupdata.Patients.Import() F
last analyzed 2020-02-18 09:40 UTC

↳ Parent: bika.health.setupdata

Complexity

Conditions

Size

Total Lines	79
Code Lines	69

Duplication

Lines	0
Ratio	0 %

Importance

Changes

Metric	Value
eloc	69
dl	0
loc	79
rs	2.4
c	0
b	0
f	0
cc	16
nop	1

How to fix Long Method Complexity

# -*- coding: utf-8 -*-
#
# This file is part of SENAITE.HEALTH.
#
# SENAITE.HEALTH is free software: you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the Free
# Software Foundation, version 2.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program; if not, write to the Free Software Foundation, Inc., 51
# Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#
# Copyright 2018-2019 by it's authors.
# Some rights reserved, see README and LICENSE.

import os.path
import transaction
from Products.CMFCore.utils import getToolByName
from Products.CMFPlone.utils import _createObjectByType
from pkg_resources import resource_filename
from zope.interface import implements

from bika.health import logger
from bika.lims.exportimport.dataimport import SetupDataSetList as SDL
from bika.lims.exportimport.setupdata import WorksheetImporter
from bika.lims.idserver import renameAfterCreation
from bika.lims.interfaces import ISetupDataSetList
from bika.lims.utils import tmpID


class SetupDataSetList(SDL):

    implements(ISetupDataSetList)

    def __call__(self):
        return SDL.__call__(self, projectname="bika.health")


class Symptoms(WorksheetImporter):

    def Import(self):
        folder = self.context.bika_setup.bika_symptoms
        rows = self.get_rows(3)
        for row in rows:
            _id = folder.invokeFactory('Symptom', id=tmpID())
            obj = folder[_id]
            if row['Title']:
                obj.edit(Code=row.get('Code', ''),
                         title=row['Title'],
                         description=row.get('Description', ''),
                         Gender=row.get('Gender', 'dk'),
                         SeverityAllowed=self.to_bool(row.get('SeverityAllowed', 1)))
                obj.unmarkCreationFlag()
                renameAfterCreation(obj)


class Treatments(WorksheetImporter):

    def Import(self):
        folder = self.context.bika_setup.bika_treatments
        for row in self.get_rows(3):
            obj = _createObjectByType('Treatment', folder, tmpID())
            if row['title']:
                obj.edit(title=row['title'],
                         description=row.get('description', ''),
                         Type=row.get('Type', 'active'),
                         Procedure=row.get('Procedure', ''),
                         Care=row.get('Care', ''),
                         SubjectiveClinicalFindings=row.get('SubjectiveClinicalFindings', ''),
                         ObjectiveClinicalFindings=row.get('ObjectiveClinicalFindings', ''),)
                obj.unmarkCreationFlag()
                renameAfterCreation(obj)


class Aetiologic_Agents(WorksheetImporter):

    def get_subtypes(self):
        sheetname = 'Aetiologic Agents Subtypes'
        worksheet = self.workbook.get_sheet_by_name(sheetname)
        if not worksheet:
            return
        subtypes = {}
        rows = self.get_rows(3, worksheet=worksheet)
        for row in rows:
            ae_title = row['aetiologicagent_title']
            if ae_title not in subtypes.keys():
                subtypes[ae_title] = []
            subtypes[ae_title].append({'Subtype': row.get('Subtype', ''),
                                       'SubtypeRemarks': row.get('SubtypeRemarks', '')})
        return subtypes

    def Import(self):
        subtypes = self.get_subtypes()
        folder = self.context.bika_setup.bika_aetiologicagents
        for row in self.get_rows(3):
            obj = _createObjectByType('AetiologicAgent', folder, tmpID())
            if not row['title']:
                continue
            ae_title = row['title']
            ae_subtypes = subtypes.get(ae_title, [])
            obj.edit(title=row['title'],
                     description=row.get('description', ''),
                     AetiologicAgentSubtypes=ae_subtypes)
            obj.unmarkCreationFlag()
            renameAfterCreation(obj)


class Case_Syndromic_Classifications(WorksheetImporter):

    def Import(self):
        folder = self.context.bika_setup.bika_casesyndromicclassifications
        for row in self.get_rows(3):
            obj = _createObjectByType('CaseSyndromicClassification', folder, tmpID())
            if row['title']:
                obj.edit(title=row['title'],
                         description=row.get('description', ''),)
                obj.unmarkCreationFlag()
                renameAfterCreation(obj)


class Drugs(WorksheetImporter):

    def Import(self):
        folder = self.context.bika_setup.bika_drugs
        for row in self.get_rows(3):
            obj = _createObjectByType('Drug', folder, tmpID())
            if row['title']:
                obj.edit(title=row['title'],
                         description=row.get('description', ''),
                         Category=row.get('Category', ''),
                         Indications=row.get('Indications', ''),
                         Posology=row.get('Posology', ''),
                         SideEffects=row.get('SideEffects', ''),
                         Preservation=row.get('Preservation', ''),)
                obj.unmarkCreationFlag()
                renameAfterCreation(obj)


class Drug_Prohibitions(WorksheetImporter):

    def Import(self):
        folder = self.context.bika_setup.bika_drugprohibitions
        for row in self.get_rows(3):
            obj = _createObjectByType('DrugProhibition', folder, tmpID())
            if row['title']:
                obj.edit(title=row['title'],
                         description=row.get('description', ''),)
                obj.unmarkCreationFlag()
                renameAfterCreation(obj)


class Identifier_Types(WorksheetImporter):

    def Import(self):
        folder = self.context.bika_setup.bika_identifiertypes
        for row in self.get_rows(3):
            obj = _createObjectByType('IdentifierType', folder, tmpID())
            if row['title']:
                obj.edit(title=row['title'],
                         description=row.get('description', ''),)
                obj.unmarkCreationFlag()
                renameAfterCreation(obj)


class Immunizations(WorksheetImporter):

    def Import(self):
        folder = self.context.bika_setup.bika_immunizations
        for row in self.get_rows(3):
            obj = _createObjectByType('Immunization', folder, tmpID())
            if row['title']:
                obj.edit(title=row['title'],
                         description=row.get('description', ''),
                         Form=row.get('Form', 'active'),
                         RelevantFacts=row.get('RelevantFacts', ''),
                         GeographicalDistribution=row.get('GeographicalDistribution', ''),
                         Transmission=row.get('Transmission', ''),
                         Symptoms=row.get('Symptoms', ''),
                         Risk=row.get('Risk', ''),
                         Treatment=row.get('Treatment', ''),
                         Prevention=row.get('Prevention', ''),)
                obj.unmarkCreationFlag()
                renameAfterCreation(obj)


class Vaccination_Centers(WorksheetImporter):

    def Import(self):
        folder = self.context.bika_setup.bika_vaccinationcenters
        for row in self.get_rows(3):
            obj = _createObjectByType("VaccinationCenter", folder, tmpID())
            if row['Name']:
                obj.edit(
                    Name=row.get('Name', ''),
                    TaxNumber=row.get('TaxNumber', ''),
                    AccountType=row.get('AccountType', {}),
                    AccountName=row.get('AccountName', {}),
                    AccountNumber=row.get('AccountNumber', ''),
                    BankName=row.get('BankName', ''),
                    BankBranch=row.get('BankBranch', ''),
                )
                self.fill_contactfields(row, obj)
                self.fill_addressfields(row, obj)
                obj.unmarkCreationFlag()
                renameAfterCreation(obj)


class Case_Outcomes(WorksheetImporter):

    def Import(self):

        folder = self.context.bika_setup.bika_caseoutcomes
        rows = self.get_rows(3)
        for row in rows:
            if row['title']:
                _id = folder.invokeFactory('CaseOutcome', id=tmpID())
                obj = folder[_id]
                obj.edit(title=row['title'],
                         description=row.get('description', ''))
                obj.unmarkCreationFlag()
                renameAfterCreation(obj)


class Case_Statuses(WorksheetImporter):

    def Import(self):

        folder = self.context.bika_setup.bika_casestatuses
        rows = self.get_rows(3)
        for row in rows:
            if row['title']:
                _id = folder.invokeFactory('CaseStatus', id=tmpID())
                obj = folder[_id]
                obj.edit(title=row['title'],
                         description=row.get('description', ''))
                obj.unmarkCreationFlag()
                renameAfterCreation(obj)


class Diseases(WorksheetImporter):

    def Import(self):
        folder = self.context.bika_setup.bika_diseases
        rows = self.get_rows(3)
        for row in rows:
            _id = folder.invokeFactory('Disease', id=tmpID())
            obj = folder[_id]
            if row['Title']:
                obj.edit(ICDCode=row.get('ICDCode', ''),
                         title=row['Title'],
                         description=row.get('Description', ''))
                obj.unmarkCreationFlag()
                renameAfterCreation(obj)


class Doctors(WorksheetImporter):

    def Import(self):
        folder = self.context.doctors
        rows = self.get_rows(3)
        for row in rows:
            if not row['Firstname']:
                continue

            _id = folder.invokeFactory('Doctor', id=tmpID())
            obj = folder[_id]
            Fullname = (row['Firstname'] + " " + row.get('Surname', '')).strip()
            obj.edit(title=Fullname,
                     Salutation = row.get('Salutation', ''),
                     Firstname = row.get('Firstname', ''),
                     Surname = row.get('Surname', ''),
                     JobTitle = row.get('JobTitle', ''),
                     Department = row.get('Department', ''),
                     DoctorID = row.get('DoctorID', ''),
                     PublicationPreference = row.get('PublicationPreference','').split(","),
                     AttachmentsPermitted = self.to_bool(row.get('AttachmentsPermitted','True'))
                     )
            self.fill_contactfields(row, obj)
            self.fill_addressfields(row, obj)
            obj.unmarkCreationFlag()
            renameAfterCreation(obj)


class Ethnicities(WorksheetImporter):

    def Import(self):

        folder = self.context.bika_setup.bika_ethnicities
        rows = self.get_rows(3)
        for row in rows:
            _id = folder.invokeFactory('Ethnicity', id=tmpID())
            obj = folder[_id]
            if row.get('Title', None):
                obj.edit(title=row['Title'],
                         description=row.get('Description', ''))
                obj.unmarkCreationFlag()
                renameAfterCreation(obj)


class Patients(WorksheetImporter):

    def Import(self):
        folder = self.context.patients
        rows = self.get_rows(3)
        for row in rows:
            if not row['Firstname'] or not row['PrimaryReferrer']:
                continue
            pc = getToolByName(self.context, 'portal_catalog')
            client = pc(portal_type='Client', Title=row['PrimaryReferrer'])
            if len(client) == 0:
                error = "Primary referrer invalid: '%s'. Patient '%s %s' will not be uploaded"
                logger.error(error, row['PrimaryReferrer'], row['Firstname'], row.get('Surname', ''))
                continue

            client = client[0].getObject()

            # Getting an existing ethnicity
            bsc = getToolByName(self.context, 'bika_setup_catalog')
            ethnicity = bsc(portal_type='Ethnicity', Title=row.get('Ethnicity', ''))
            if len(ethnicity) == 0:
                raise IndexError("Invalid ethnicity: '%s'" % row['Ethnicity'])
            ethnicity = ethnicity[0].getObject()

            _id = folder.invokeFactory('Patient', id=tmpID())
            obj = folder[_id]
            obj.unmarkCreationFlag()
            renameAfterCreation(obj)
            Fullname = (row['Firstname'] + " " + row.get('Surname', '')).strip()
            obj.edit(PatientID=row.get('PatientID'),
                     title=Fullname,
                     ClientPatientID = row.get('ClientPatientID', ''),
                     Salutation = row.get('Salutation', ''),
                     Firstname = row.get('Firstname', ''),
                     Surname = row.get('Surname', ''),
                     PrimaryReferrer = client.UID(),
                     Gender = row.get('Gender', 'dk'),
                     Age = row.get('Age', ''),
                     BirthDate = row.get('BirthDate', ''),
                     BirthDateEstimated =self.to_bool(row.get('BirthDateEstimated','False')),
                     BirthPlace = row.get('BirthPlace', ''),
                     # TODO Ethnicity_Obj -> Ethnicity on health v319
                     Ethnicity_Obj=ethnicity.UID(),
                     Citizenship =row.get('Citizenship', ''),
                     MothersName = row.get('MothersName', ''),
                     CivilStatus =row.get('CivilStatus', ''),
                     Anonymous = self.to_bool(row.get('Anonymous','False'))
                     )
            self.fill_contactfields(row, obj)
            self.fill_addressfields(row, obj)
            if 'Photo' in row and row['Photo']:
                try:
                    path = resource_filename(self.dataset_project,
                                             "setupdata/%s/%s" \
                                             % (self.dataset_name, row['Photo']))
                    file_data = open(path, "rb").read() if os.path.isfile(path) \
                        else open(path+'.jpg', "rb").read()
                    obj.setPhoto(file_data)
                except:
                    logger.error("Unable to load Photo %s"%row['Photo'])

            if 'Feature' in row and row['Feature']:
                try:
                    path = resource_filename(self.dataset_project,
                                             "setupdata/%s/%s" \
                                             % (self.dataset_name, row['Feature']))
                    file_data = open(path, "rb").read() if os.path.isfile(path) \
                        else open(path+'.pdf', "rb").read()
                    obj.setFeature(file_data)
                except:
                    logger.error("Unable to load Feature %s"%row['Feature'])

            obj.unmarkCreationFlag()
            transaction.savepoint(optimistic=True)
            if row.get('PatientID'):
                # To maintain the patient spreadsheet's IDs, we cannot do a 'renameaftercreation()'
                if obj.getPatientID() != row.get('PatientID'):
                    transaction.savepoint(optimistic=True)
                    obj.aq_inner.aq_parent.manage_renameObject(obj.id, row.get('PatientID'))
            else:
                renameAfterCreation(obj)


class Insurance_Companies(WorksheetImporter):

    def Import(self):
        folder = self.context.bika_setup.bika_insurancecompanies
        for row in self.get_rows(3):
            obj = _createObjectByType("InsuranceCompany", folder, tmpID())
            if row.get('Name', None):
                obj.edit(
                    Name=row.get('Name', ''),
                    EmailAddress=row.get('EmailAddress', ''),
                    Phone=row.get('Phone', ''),
                    Fax=row.get('Fax', ''),
                    TaxNumber=row.get('TaxNumber', ''),
                    AccountType=row.get('AccountType', {}),
                    AccountName=row.get('AccountName', {}),
                    AccountNumber=row.get('AccountNumber', ''),
                    BankName=row.get('BankName', ''),
                    BankBranch=row.get('BankBranch', ''),
                )
                self.fill_contactfields(row, obj)
                self.fill_addressfields(row, obj)
                obj.unmarkCreationFlag()
                renameAfterCreation(obj)


1		# -- coding: utf-8 --
2		#
3		# This file is part of SENAITE.HEALTH.
4		#
5		# SENAITE.HEALTH is free software: you can redistribute it and/or modify it
6		# under the terms of the GNU General Public License as published by the Free
7		# Software Foundation, version 2.
8		#
9		# This program is distributed in the hope that it will be useful, but WITHOUT
10		# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
11		# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
12		# details.
13		#
14		# You should have received a copy of the GNU General Public License along with
15		# this program; if not, write to the Free Software Foundation, Inc., 51
16		# Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
17		#
18		# Copyright 2018-2019 by it's authors.
19		# Some rights reserved, see README and LICENSE.
20
21		import os.path
22		import transaction
23		from Products.CMFCore.utils import getToolByName
24		from Products.CMFPlone.utils import _createObjectByType
25		from pkg_resources import resource_filename
26		from zope.interface import implements
27
28		from bika.health import logger
29		from bika.lims.exportimport.dataimport import SetupDataSetList as SDL
30		from bika.lims.exportimport.setupdata import WorksheetImporter
31		from bika.lims.idserver import renameAfterCreation
32		from bika.lims.interfaces import ISetupDataSetList
33		from bika.lims.utils import tmpID
34
35
36		class SetupDataSetList(SDL):
37
38		implements(ISetupDataSetList)
39
40		def __call__(self):
41		return SDL.__call__(self, projectname="bika.health")
42
43
44		class Symptoms(WorksheetImporter):
45
46		def Import(self):
47		folder = self.context.bika_setup.bika_symptoms
48		rows = self.get_rows(3)
49		for row in rows:
50		_id = folder.invokeFactory('Symptom', id=tmpID())
51		obj = folder[_id]
52		if row['Title']:
53		obj.edit(Code=row.get('Code', ''),
54		title=row['Title'],
55		description=row.get('Description', ''),
56		Gender=row.get('Gender', 'dk'),
57		SeverityAllowed=self.to_bool(row.get('SeverityAllowed', 1)))
58		obj.unmarkCreationFlag()
59		renameAfterCreation(obj)
60
61
62		class Treatments(WorksheetImporter):
63
64		def Import(self):
65		folder = self.context.bika_setup.bika_treatments
66		for row in self.get_rows(3):
67		obj = _createObjectByType('Treatment', folder, tmpID())
68		if row['title']:
69		obj.edit(title=row['title'],
70		description=row.get('description', ''),
71		Type=row.get('Type', 'active'),
72		Procedure=row.get('Procedure', ''),
73		Care=row.get('Care', ''),
74		SubjectiveClinicalFindings=row.get('SubjectiveClinicalFindings', ''),
75		ObjectiveClinicalFindings=row.get('ObjectiveClinicalFindings', ''),)
76		obj.unmarkCreationFlag()
77		renameAfterCreation(obj)
78
79
80		class Aetiologic_Agents(WorksheetImporter):
81
82		def get_subtypes(self):
83		sheetname = 'Aetiologic Agents Subtypes'
84		worksheet = self.workbook.get_sheet_by_name(sheetname)
85		if not worksheet:
86		return
87		subtypes = {}
88		rows = self.get_rows(3, worksheet=worksheet)
89		for row in rows:
90		ae_title = row['aetiologicagent_title']
91		if ae_title not in subtypes.keys():
92		subtypes[ae_title] = []
93		subtypes[ae_title].append({'Subtype': row.get('Subtype', ''),
94		'SubtypeRemarks': row.get('SubtypeRemarks', '')})
95		return subtypes
96
97		def Import(self):
98		subtypes = self.get_subtypes()
99		folder = self.context.bika_setup.bika_aetiologicagents
100		for row in self.get_rows(3):
101		obj = _createObjectByType('AetiologicAgent', folder, tmpID())
102		if not row['title']:
103		continue
104		ae_title = row['title']
105		ae_subtypes = subtypes.get(ae_title, [])
106		obj.edit(title=row['title'],
107		description=row.get('description', ''),
108		AetiologicAgentSubtypes=ae_subtypes)
109		obj.unmarkCreationFlag()
110		renameAfterCreation(obj)
111
112
113		class Case_Syndromic_Classifications(WorksheetImporter):
114
115		def Import(self):
116		folder = self.context.bika_setup.bika_casesyndromicclassifications
117		for row in self.get_rows(3):
118		obj = _createObjectByType('CaseSyndromicClassification', folder, tmpID())
119		if row['title']:
120		obj.edit(title=row['title'],
121		description=row.get('description', ''),)
122		obj.unmarkCreationFlag()
123		renameAfterCreation(obj)
124
125
126		class Drugs(WorksheetImporter):
127
128		def Import(self):
129		folder = self.context.bika_setup.bika_drugs
130		for row in self.get_rows(3):
131		obj = _createObjectByType('Drug', folder, tmpID())
132		if row['title']:
133		obj.edit(title=row['title'],
134		description=row.get('description', ''),
135		Category=row.get('Category', ''),
136		Indications=row.get('Indications', ''),
137		Posology=row.get('Posology', ''),
138		SideEffects=row.get('SideEffects', ''),
139		Preservation=row.get('Preservation', ''),)
140		obj.unmarkCreationFlag()
141		renameAfterCreation(obj)
142
143
144		class Drug_Prohibitions(WorksheetImporter):
145
146		def Import(self):
147		folder = self.context.bika_setup.bika_drugprohibitions
148		for row in self.get_rows(3):
149		obj = _createObjectByType('DrugProhibition', folder, tmpID())
150		if row['title']:
151		obj.edit(title=row['title'],
152		description=row.get('description', ''),)
153		obj.unmarkCreationFlag()
154		renameAfterCreation(obj)
155
156
157		class Identifier_Types(WorksheetImporter):
158
159		def Import(self):
160		folder = self.context.bika_setup.bika_identifiertypes
161		for row in self.get_rows(3):
162		obj = _createObjectByType('IdentifierType', folder, tmpID())
163		if row['title']:
164		obj.edit(title=row['title'],
165		description=row.get('description', ''),)
166		obj.unmarkCreationFlag()
167		renameAfterCreation(obj)
168
169
170		class Immunizations(WorksheetImporter):
171
172		def Import(self):
173		folder = self.context.bika_setup.bika_immunizations
174		for row in self.get_rows(3):
175		obj = _createObjectByType('Immunization', folder, tmpID())
176		if row['title']:
177		obj.edit(title=row['title'],
178		description=row.get('description', ''),
179		Form=row.get('Form', 'active'),
180		RelevantFacts=row.get('RelevantFacts', ''),
181		GeographicalDistribution=row.get('GeographicalDistribution', ''),
182		Transmission=row.get('Transmission', ''),
183		Symptoms=row.get('Symptoms', ''),
184		Risk=row.get('Risk', ''),
185		Treatment=row.get('Treatment', ''),
186		Prevention=row.get('Prevention', ''),)
187		obj.unmarkCreationFlag()
188		renameAfterCreation(obj)
189
190
191		class Vaccination_Centers(WorksheetImporter):
192
193		def Import(self):
194		folder = self.context.bika_setup.bika_vaccinationcenters
195		for row in self.get_rows(3):
196		obj = _createObjectByType("VaccinationCenter", folder, tmpID())
197		if row['Name']:
198		obj.edit(
199		Name=row.get('Name', ''),
200		TaxNumber=row.get('TaxNumber', ''),
201		AccountType=row.get('AccountType', {}),
202		AccountName=row.get('AccountName', {}),
203		AccountNumber=row.get('AccountNumber', ''),
204		BankName=row.get('BankName', ''),
205		BankBranch=row.get('BankBranch', ''),
206		)
207		self.fill_contactfields(row, obj)
208		self.fill_addressfields(row, obj)
209		obj.unmarkCreationFlag()
210		renameAfterCreation(obj)
211
212
213		class Case_Outcomes(WorksheetImporter):
214
215	View Code Duplication	def Import(self):
		0 ignored issues – show Duplication introduced 2018-01-12 18:07 UTC by Report Bug Copy Issue Report This code seems to be duplicated in your project. Loading history...
216		folder = self.context.bika_setup.bika_caseoutcomes
217		rows = self.get_rows(3)
218		for row in rows:
219		if row['title']:
220		_id = folder.invokeFactory('CaseOutcome', id=tmpID())
221		obj = folder[_id]
222		obj.edit(title=row['title'],
223		description=row.get('description', ''))
224		obj.unmarkCreationFlag()
225		renameAfterCreation(obj)
226
227
228		class Case_Statuses(WorksheetImporter):
229
230	View Code Duplication	def Import(self):
		0 ignored issues – show Duplication introduced 2018-01-12 18:07 UTC by Report Bug Copy Issue Report This code seems to be duplicated in your project. Loading history...
231		folder = self.context.bika_setup.bika_casestatuses
232		rows = self.get_rows(3)
233		for row in rows:
234		if row['title']:
235		_id = folder.invokeFactory('CaseStatus', id=tmpID())
236		obj = folder[_id]
237		obj.edit(title=row['title'],
238		description=row.get('description', ''))
239		obj.unmarkCreationFlag()
240		renameAfterCreation(obj)
241
242
243		class Diseases(WorksheetImporter):
244
245		def Import(self):
246		folder = self.context.bika_setup.bika_diseases
247		rows = self.get_rows(3)
248		for row in rows:
249		_id = folder.invokeFactory('Disease', id=tmpID())
250		obj = folder[_id]
251		if row['Title']:
252		obj.edit(ICDCode=row.get('ICDCode', ''),
253		title=row['Title'],
254		description=row.get('Description', ''))
255		obj.unmarkCreationFlag()
256		renameAfterCreation(obj)
257
258
259		class Doctors(WorksheetImporter):
260
261		def Import(self):
262		folder = self.context.doctors
263		rows = self.get_rows(3)
264		for row in rows:
265		if not row['Firstname']:
266		continue
267
268		_id = folder.invokeFactory('Doctor', id=tmpID())
269		obj = folder[_id]
270		Fullname = (row['Firstname'] + " " + row.get('Surname', '')).strip()
271		obj.edit(title=Fullname,
272		Salutation = row.get('Salutation', ''),
273		Firstname = row.get('Firstname', ''),
274		Surname = row.get('Surname', ''),
275		JobTitle = row.get('JobTitle', ''),
276		Department = row.get('Department', ''),
277		DoctorID = row.get('DoctorID', ''),
278		PublicationPreference = row.get('PublicationPreference','').split(","),
279		AttachmentsPermitted = self.to_bool(row.get('AttachmentsPermitted','True'))
280		)
281		self.fill_contactfields(row, obj)
282		self.fill_addressfields(row, obj)
283		obj.unmarkCreationFlag()
284		renameAfterCreation(obj)
285
286
287		class Ethnicities(WorksheetImporter):
288
289	View Code Duplication	def Import(self):
		0 ignored issues – show Duplication introduced 2018-01-12 18:07 UTC by Report Bug Copy Issue Report This code seems to be duplicated in your project. Loading history...
290		folder = self.context.bika_setup.bika_ethnicities
291		rows = self.get_rows(3)
292		for row in rows:
293		_id = folder.invokeFactory('Ethnicity', id=tmpID())
294		obj = folder[_id]
295		if row.get('Title', None):
296		obj.edit(title=row['Title'],
297		description=row.get('Description', ''))
298		obj.unmarkCreationFlag()
299		renameAfterCreation(obj)
300
301
302		class Patients(WorksheetImporter):
303
304		def Import(self):
305		folder = self.context.patients
306		rows = self.get_rows(3)
307		for row in rows:
308		if not row['Firstname'] or not row['PrimaryReferrer']:
309		continue
310		pc = getToolByName(self.context, 'portal_catalog')
311		client = pc(portal_type='Client', Title=row['PrimaryReferrer'])
312		if len(client) == 0:
313		error = "Primary referrer invalid: '%s'. Patient '%s %s' will not be uploaded"
314		logger.error(error, row['PrimaryReferrer'], row['Firstname'], row.get('Surname', ''))
315		continue
316
317		client = client[0].getObject()
318
319		# Getting an existing ethnicity
320		bsc = getToolByName(self.context, 'bika_setup_catalog')
321		ethnicity = bsc(portal_type='Ethnicity', Title=row.get('Ethnicity', ''))
322		if len(ethnicity) == 0:
323		raise IndexError("Invalid ethnicity: '%s'" % row['Ethnicity'])
324		ethnicity = ethnicity[0].getObject()
325
326		_id = folder.invokeFactory('Patient', id=tmpID())
327		obj = folder[_id]
328		obj.unmarkCreationFlag()
329		renameAfterCreation(obj)
330		Fullname = (row['Firstname'] + " " + row.get('Surname', '')).strip()
331		obj.edit(PatientID=row.get('PatientID'),
332		title=Fullname,
333		ClientPatientID = row.get('ClientPatientID', ''),
334		Salutation = row.get('Salutation', ''),
335		Firstname = row.get('Firstname', ''),
336		Surname = row.get('Surname', ''),
337		PrimaryReferrer = client.UID(),
338		Gender = row.get('Gender', 'dk'),
339		Age = row.get('Age', ''),
340		BirthDate = row.get('BirthDate', ''),
341		BirthDateEstimated =self.to_bool(row.get('BirthDateEstimated','False')),
342		BirthPlace = row.get('BirthPlace', ''),
343		# TODO Ethnicity_Obj -> Ethnicity on health v319
344		Ethnicity_Obj=ethnicity.UID(),
345		Citizenship =row.get('Citizenship', ''),
346		MothersName = row.get('MothersName', ''),
347		CivilStatus =row.get('CivilStatus', ''),
348		Anonymous = self.to_bool(row.get('Anonymous','False'))
349		)
350		self.fill_contactfields(row, obj)
351		self.fill_addressfields(row, obj)
352		if 'Photo' in row and row['Photo']:
353		try:
354		path = resource_filename(self.dataset_project,
355		"setupdata/%s/%s" \
356		% (self.dataset_name, row['Photo']))
357		file_data = open(path, "rb").read() if os.path.isfile(path) \
358		else open(path+'.jpg', "rb").read()
359		obj.setPhoto(file_data)
360		except:
361		logger.error("Unable to load Photo %s"%row['Photo'])
362
363		if 'Feature' in row and row['Feature']:
364		try:
365		path = resource_filename(self.dataset_project,
366		"setupdata/%s/%s" \
367		% (self.dataset_name, row['Feature']))
368		file_data = open(path, "rb").read() if os.path.isfile(path) \
369		else open(path+'.pdf', "rb").read()
370		obj.setFeature(file_data)
371		except:
372		logger.error("Unable to load Feature %s"%row['Feature'])
373
374		obj.unmarkCreationFlag()
375		transaction.savepoint(optimistic=True)
376		if row.get('PatientID'):
377		# To maintain the patient spreadsheet's IDs, we cannot do a 'renameaftercreation()'
378		if obj.getPatientID() != row.get('PatientID'):
379		transaction.savepoint(optimistic=True)
380		obj.aq_inner.aq_parent.manage_renameObject(obj.id, row.get('PatientID'))
381		else:
382		renameAfterCreation(obj)
383
384
385		class Insurance_Companies(WorksheetImporter):
386
387		def Import(self):
388		folder = self.context.bika_setup.bika_insurancecompanies
389		for row in self.get_rows(3):
390		obj = _createObjectByType("InsuranceCompany", folder, tmpID())
391		if row.get('Name', None):
392		obj.edit(
393		Name=row.get('Name', ''),
394		EmailAddress=row.get('EmailAddress', ''),
395		Phone=row.get('Phone', ''),
396		Fax=row.get('Fax', ''),
397		TaxNumber=row.get('TaxNumber', ''),
398		AccountType=row.get('AccountType', {}),
399		AccountName=row.get('AccountName', {}),
400		AccountNumber=row.get('AccountNumber', ''),
401		BankName=row.get('BankName', ''),
402		BankBranch=row.get('BankBranch', ''),
403		)
404		self.fill_contactfields(row, obj)
405		self.fill_addressfields(row, obj)
406		obj.unmarkCreationFlag()
407		renameAfterCreation(obj)
408

senaite / senaite.health

bika.health.setupdata.Patients.Import() F last analyzed 2020-02-18 09:40 UTC

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bika.health.setupdata.Patients.Import() F
last analyzed 2020-02-18 09:40 UTC