build.bika.lims.setuphandlers.BikaGenerator.setupCatalogs() - Code Metrics - Inspection of "Some Items show the Display/State/Add menu (#1304)" - senaite/senaite.core - Measure and Improve Code Quality continuously with Scrutinizer

Passed

Push — master ( feb3de...56c573 )

by Jordi

created 2019-03-28 00:25 UTC

BikaGenerator.setupCatalogs() C

↳ Parent: build.bika.lims.setuphandlers

Complexity

Conditions

Size

Total Lines	311
Code Lines	273

Duplication

Lines	0
Ratio	0 %

Importance

Changes

Metric	Value
eloc	273
dl	0
loc	311
rs	5.1333
c	0
b	0
f	0
cc	8
nop	2

How to fix Long Method

# -*- coding: utf-8 -*-
#
# This file is part of SENAITE.CORE
#
# Copyright 2018 by it's authors.
# Some rights reserved. See LICENSE.rst, CONTRIBUTORS.rst.

from Products.CMFCore.utils import getToolByName
from bika.lims import logger
from bika.lims.catalog import getCatalogDefinitions
from bika.lims.catalog import setup_catalogs
from bika.lims.config import *

GROUPS = {
    # Dictionary {group_name: [roles]}
    "Analysts": ["Analyst", ],
    "Clients": ["Client", ],
    "LabClerks": ["LabClerk",],
    # TODO Unbound LabManagers from Manager role
    "LabManagers": ["LabManager", "Manager", ],
    "Preservers": ["Perserver", ],
    "Publishers": ["Publisher", ],
    "Verifiers": ["Verifier", ],
    "Samplers": ["Sampler", ],
    "RegulatoryInspectors": ["RegulatoryInspector", ],
    "SamplingCoordinators": ["SamplingCoordinator", ],
}

NAV_BAR_ITEMS_TO_HIDE = (
    # List of items to hide from navigation bar
    "arimports",
    "pricelists",
    "supplyorders",
)

# noinspection PyClassHasNoInit
class Empty:
    pass


class BikaGenerator(object):
    def __init__(self):
        pass

    def setupPortalContent(self, portal):
        """ Setup Bika site structure """
        self.remove_default_content(portal)
        self.reindex_structure(portal)

        portal.bika_setup.laboratory.unmarkCreationFlag()
        portal.bika_setup.laboratory.reindexObject()

    def reindex_structure(self, portal):
        # index objects - importing through GenericSetup doesn't
        for obj_id in ('clients',
                       'batches',
                       'pricelists',
                       'bika_setup',
                       'methods',
                       'analysisrequests',
                       'referencesamples',
                       'supplyorders',
                       'worksheets',
                       'reports',
                       ):
            try:
                obj = portal[obj_id]
                obj.unmarkCreationFlag()
                obj.reindexObject()
            except AttributeError:
                pass

        for obj_id in ('bika_analysiscategories',
                       'bika_analysisservices',
                       'bika_attachmenttypes',
                       'bika_batchlabels',
                       'bika_calculations',
                       'bika_departments',
                       'bika_containers',
                       'bika_containertypes',
                       'bika_preservations',
                       'bika_identifiertypes',
                       'bika_instruments',
                       'bika_instrumenttypes',
                       'bika_instrumentlocations',
                       'bika_analysisspecs',
                       'bika_analysisprofiles',
                       'bika_artemplates',
                       'bika_labcontacts',
                       'bika_labproducts',
                       'bika_manufacturers',
                       'bika_sampleconditions',
                       'bika_samplematrices',
                       'bika_samplingdeviations',
                       'bika_samplepoints',
                       'bika_sampletypes',
                       'bika_srtemplates',
                       'bika_reflexrulefolder',
                       'bika_storagelocations',
                       'bika_subgroups',
                       'bika_suppliers',
                       'bika_referencedefinitions',
                       'bika_worksheettemplates'):
            try:
                obj = portal.bika_setup[obj_id]
                obj.unmarkCreationFlag()
                obj.reindexObject()
            except AttributeError:
                pass

    def remove_default_content(self, portal):
        # remove undesired content objects
        del_ids = []
        for obj_id in ['Members', 'news', 'events']:
            if obj_id in portal:
                del_ids.append(obj_id)
        if del_ids:
            portal.manage_delObjects(ids=del_ids)

    def setupGroupsAndRoles(self, portal):
        # Create groups
        groups_ids = portal.portal_groups.listGroupIds()
        groups_ids = filter(lambda gr: gr not in groups_ids, GROUPS.keys())
        for group_id in groups_ids:
            portal.portal_groups.addGroup(group_id, title=group_id,
                                          roles=GROUPS[group_id])

    def setupCatalogs(self, portal):
        # an item should belong to only one catalog.
        # that way looking it up means first looking up *the* catalog
        # in which it is indexed, as well as making it cheaper to index.

        def addIndex(cat, *args):
            # noinspection PyBroadException
            try:
                cat.addIndex(*args)
            except:
                pass

        def addColumn(cat, col):
            # noinspection PyBroadException
            try:
                cat.addColumn(col)
            except:
                pass

        # create lexicon
        wordSplitter = Empty()
        wordSplitter.group = 'Word Splitter'
        wordSplitter.name = 'Unicode Whitespace splitter'
        caseNormalizer = Empty()
        caseNormalizer.group = 'Case Normalizer'
        caseNormalizer.name = 'Unicode Case Normalizer'
        stopWords = Empty()
        stopWords.group = 'Stop Words'
        stopWords.name = 'Remove listed and single char words'
        elem = [wordSplitter, caseNormalizer, stopWords]
        zc_extras = Empty()
        zc_extras.index_type = 'Okapi BM25 Rank'
        zc_extras.lexicon_id = 'Lexicon'

        # bika_catalog

        bc = getToolByName(portal, 'bika_catalog', None)
        if bc is None:
            logger.warning('Could not find the bika_catalog tool.')
            return

        # noinspection PyBroadException
        try:
            bc.manage_addProduct['ZCTextIndex'].manage_addLexicon(
                'Lexicon', 'Lexicon', elem)
        except:
            logger.warning('Could not add ZCTextIndex to bika_catalog')
            pass

        at = getToolByName(portal, 'archetype_tool')
        at.setCatalogsByType('Batch', ['bika_catalog', 'portal_catalog'])
        # TODO Remove in >v1.3.0
        at.setCatalogsByType('Sample', ['bika_catalog', 'portal_catalog'])
        # TODO Remove in >v1.3.0
        at.setCatalogsByType('SamplePartition',
                             ['bika_catalog', 'portal_catalog'])
        at.setCatalogsByType('ReferenceSample',
                             ['bika_catalog', 'portal_catalog'])

        addIndex(bc, 'path', 'ExtendedPathIndex', 'getPhysicalPath')
        addIndex(bc, 'allowedRolesAndUsers', 'KeywordIndex')
        addIndex(bc, 'UID', 'FieldIndex')
        addIndex(bc, 'SearchableText', 'ZCTextIndex', zc_extras)
        addIndex(bc, 'Title', 'ZCTextIndex', zc_extras)
        addIndex(bc, 'Description', 'ZCTextIndex', zc_extras)
        addIndex(bc, 'id', 'FieldIndex')
        addIndex(bc, 'getId', 'FieldIndex')
        addIndex(bc, 'Type', 'FieldIndex')
        addIndex(bc, 'portal_type', 'FieldIndex')
        addIndex(bc, 'created', 'DateIndex')
        addIndex(bc, 'Creator', 'FieldIndex')
        addIndex(bc, 'getObjPositionInParent', 'GopipIndex')
        addIndex(bc, 'title', 'FieldIndex', 'Title')
        addIndex(bc, 'sortable_title', 'FieldIndex')
        addIndex(bc, 'description', 'FieldIndex', 'Description')
        addIndex(bc, 'review_state', 'FieldIndex')
        addIndex(bc, 'Identifiers', 'KeywordIndex')
        addIndex(bc, 'is_active', 'BooleanIndex')
        addIndex(bc, 'BatchDate', 'DateIndex')
        addIndex(bc, 'getClientTitle', 'FieldIndex')
        addIndex(bc, 'getClientUID', 'FieldIndex')
        addIndex(bc, 'getClientID', 'FieldIndex')
        addIndex(bc, 'getClientBatchID', 'FieldIndex')
        addIndex(bc, 'getDateReceived', 'DateIndex')
        addIndex(bc, 'getDateSampled', 'DateIndex')
        addIndex(bc, 'getDueDate', 'DateIndex')
        addIndex(bc, 'getExpiryDate', 'DateIndex')
        addIndex(bc, 'getReferenceDefinitionUID', 'FieldIndex')
        addIndex(bc, 'getSampleTypeTitle', 'FieldIndex')
        addIndex(bc, 'getSampleTypeUID', 'FieldIndex')

        # https://github.com/senaite/senaite.core/pull/1091
        addIndex(bc, 'getSupportedServices', 'KeywordIndex')
        addIndex(bc, 'getBlank', 'BooleanIndex')
        addIndex(bc, 'isValid', 'BooleanIndex')

        addColumn(bc, 'path')
        addColumn(bc, 'UID')
        addColumn(bc, 'id')
        addColumn(bc, 'getId')
        addColumn(bc, 'Type')
        addColumn(bc, 'portal_type')
        addColumn(bc, 'creator')
        addColumn(bc, 'Created')
        addColumn(bc, 'Title')
        addColumn(bc, 'Description')
        addColumn(bc, 'sortable_title')
        addColumn(bc, 'getClientTitle')
        addColumn(bc, 'getClientID')
        addColumn(bc, 'getClientBatchID')
        addColumn(bc, 'getSampleTypeTitle')
        addColumn(bc, 'getDateReceived')
        addColumn(bc, 'getDateSampled')
        addColumn(bc, 'review_state')

        # bika_setup_catalog

        bsc = getToolByName(portal, 'bika_setup_catalog', None)
        if bsc is None:
            logger.warning('Could not find the setup catalog tool.')
            return

        # noinspection PyBroadException
        try:
            bsc.manage_addProduct['ZCTextIndex'].manage_addLexicon(
                'Lexicon', 'Lexicon', elem)
        except:
            logger.warning('Could not add ZCTextIndex to bika_setup_catalog')
            pass

        at = getToolByName(portal, 'archetype_tool')
        at.setCatalogsByType('Department',
                             ['bika_setup_catalog', "portal_catalog", ])
        at.setCatalogsByType('Container', ['bika_setup_catalog', ])
        at.setCatalogsByType('ContainerType', ['bika_setup_catalog', ])
        at.setCatalogsByType('AnalysisCategory', ['bika_setup_catalog', ])
        at.setCatalogsByType('AnalysisService',
                             ['bika_setup_catalog', 'portal_catalog'])
        at.setCatalogsByType('AnalysisSpec', ['bika_setup_catalog', ])
        at.setCatalogsByType('SampleCondition', ['bika_setup_catalog'])
        at.setCatalogsByType('SampleMatrix', ['bika_setup_catalog', ])
        at.setCatalogsByType('SampleType',
                             ['bika_setup_catalog', 'portal_catalog'])
        at.setCatalogsByType('SamplePoint',
                             ['bika_setup_catalog', 'portal_catalog'])
        at.setCatalogsByType('StorageLocation',
                             ['bika_setup_catalog', 'portal_catalog'])
        at.setCatalogsByType('SamplingDeviation', ['bika_setup_catalog', ])
        at.setCatalogsByType('IdentifierType', ['bika_setup_catalog', ])
        at.setCatalogsByType('Instrument',
                             ['bika_setup_catalog', 'portal_catalog'])
        at.setCatalogsByType('InstrumentType',
                             ['bika_setup_catalog', 'portal_catalog'])
        at.setCatalogsByType('InstrumentLocation',
                             ['bika_setup_catalog', 'portal_catalog'])
        at.setCatalogsByType('Method', ['bika_setup_catalog', 'portal_catalog'])
        at.setCatalogsByType('Multifile', ['bika_setup_catalog'])
        at.setCatalogsByType('AttachmentType', ['bika_setup_catalog', ])
        at.setCatalogsByType('Attachment', ['portal_catalog'])
        at.setCatalogsByType('Calculation',
                             ['bika_setup_catalog', 'portal_catalog'])
        at.setCatalogsByType('AnalysisProfile',
                             ['bika_setup_catalog', 'portal_catalog'])
        at.setCatalogsByType('ARTemplate',
                             ['bika_setup_catalog', 'portal_catalog'])
        at.setCatalogsByType('LabProduct',
                             ['bika_setup_catalog', 'portal_catalog'])
        at.setCatalogsByType('LabContact',
                             ['bika_setup_catalog', 'portal_catalog'])
        at.setCatalogsByType('Manufacturer',
                             ['bika_setup_catalog', 'portal_catalog'])
        at.setCatalogsByType('Preservation', ['bika_setup_catalog', ])
        at.setCatalogsByType('ReferenceDefinition',
                             ['bika_setup_catalog', 'portal_catalog'])
        at.setCatalogsByType('SRTemplate',
                             ['bika_setup_catalog', 'portal_catalog'])
        at.setCatalogsByType('SubGroup', ['bika_setup_catalog', ])
        at.setCatalogsByType('Supplier',
                             ['bika_setup_catalog', 'portal_catalog'])
        at.setCatalogsByType('Unit', ['bika_setup_catalog', ])
        at.setCatalogsByType('WorksheetTemplate',
                             ['bika_setup_catalog', 'portal_catalog'])
        at.setCatalogsByType('BatchLabel', ['bika_setup_catalog', ])

        addIndex(bsc, 'path', 'ExtendedPathIndex', 'getPhysicalPath')
        addIndex(bsc, 'allowedRolesAndUsers', 'KeywordIndex')
        addIndex(bsc, 'UID', 'FieldIndex')
        addIndex(bsc, 'SearchableText', 'ZCTextIndex', zc_extras)
        addIndex(bsc, 'Title', 'ZCTextIndex', zc_extras)
        addIndex(bsc, 'Description', 'ZCTextIndex', zc_extras)
        addIndex(bsc, 'id', 'FieldIndex')
        addIndex(bsc, 'getId', 'FieldIndex')
        addIndex(bsc, 'Type', 'FieldIndex')
        addIndex(bsc, 'portal_type', 'FieldIndex')
        addIndex(bsc, 'created', 'DateIndex')
        addIndex(bsc, 'Creator', 'FieldIndex')
        addIndex(bsc, 'getObjPositionInParent', 'GopipIndex')
        addIndex(bc, 'Identifiers', 'KeywordIndex')

        addIndex(bsc, 'title', 'FieldIndex', 'Title')
        addIndex(bsc, 'sortable_title', 'FieldIndex')
        addIndex(bsc, 'description', 'FieldIndex', 'Description')

        addIndex(bsc, 'review_state', 'FieldIndex')

        addIndex(bsc, 'getAccredited', 'FieldIndex')
        addIndex(bsc, 'getAnalyst', 'FieldIndex')
        addIndex(bsc, 'getBlank', 'FieldIndex')
        addIndex(bsc, 'getCalculationTitle', 'FieldIndex')
        addIndex(bsc, 'getCalculationUID', 'FieldIndex')
        addIndex(bsc, 'getCalibrationExpiryDate', 'FieldIndex')
        addIndex(bsc, 'getCategoryTitle', 'FieldIndex')
        addIndex(bsc, 'getCategoryUID', 'FieldIndex')
        addIndex(bsc, 'getClientUID', 'FieldIndex')
        addIndex(bsc, 'getDepartmentTitle', 'FieldIndex')
        addIndex(bsc, 'getDocumentID', 'FieldIndex')
        addIndex(bsc, 'getDuplicateVariation', 'FieldIndex')
        addIndex(bsc, 'getFormula', 'FieldIndex')
        addIndex(bsc, 'getFullname', 'FieldIndex')
        addIndex(bsc, 'getHazardous', 'FieldIndex')
        addIndex(bsc, 'getInstrumentLocationName', 'FieldIndex')
        addIndex(bsc, 'getInstrumentTitle', 'FieldIndex')
        addIndex(bsc, 'getInstrumentType', 'FieldIndex')
        addIndex(bsc, 'getInstrumentTypeName', 'FieldIndex')
        addIndex(bsc, 'getKeyword', 'FieldIndex')
        addIndex(bsc, 'getManagerEmail', 'FieldIndex')
        addIndex(bsc, 'getManagerName', 'FieldIndex')
        addIndex(bsc, 'getManagerPhone', 'FieldIndex')
        addIndex(bsc, 'getMaxTimeAllowed', 'FieldIndex')
        addIndex(bsc, 'getMethodID', 'FieldIndex')
        addIndex(bsc, 'getAvailableMethodUIDs', 'KeywordIndex')
        addIndex(bsc, 'getModel', 'FieldIndex')
        addIndex(bsc, 'getName', 'FieldIndex')
        addIndex(bsc, 'getPointOfCapture', 'FieldIndex')
        addIndex(bsc, 'getPrice', 'FieldIndex')
        addIndex(bsc, 'getSamplePointTitle', 'KeywordIndex')
        addIndex(bsc, 'getSamplePointUID', 'FieldIndex')
        addIndex(bsc, 'getSampleTypeTitle', 'FieldIndex')
        addIndex(bsc, 'getSampleTypeTitles', 'KeywordIndex')
        addIndex(bsc, 'getSampleTypeUID', 'FieldIndex')
        addIndex(bsc, 'getServiceUID', 'FieldIndex')
        addIndex(bsc, 'getServiceUIDs', 'KeywordIndex')
        addIndex(bsc, 'getTotalPrice', 'FieldIndex')
        addIndex(bsc, 'getUnit', 'FieldIndex')
        addIndex(bsc, 'getVATAmount', 'FieldIndex')
        addIndex(bsc, 'getVolume', 'FieldIndex')
        addIndex(bsc, 'is_active', 'BooleanIndex')

        addColumn(bsc, 'path')
        addColumn(bsc, 'UID')
        addColumn(bsc, 'id')
        addColumn(bsc, 'getId')
        addColumn(bsc, 'Type')
        addColumn(bsc, 'portal_type')
        addColumn(bsc, 'getObjPositionInParent')

        addColumn(bsc, 'Title')
        addColumn(bsc, 'Description')
        addColumn(bsc, 'title')
        addColumn(bsc, 'sortable_title')
        addColumn(bsc, 'description')
        addColumn(bsc, 'review_state')
        addColumn(bsc, 'getAccredited')
        addColumn(bsc, 'getInstrumentType')
        addColumn(bsc, 'getInstrumentTypeName')
        addColumn(bsc, 'getInstrumentLocationName')
        addColumn(bsc, 'getBlank')
        addColumn(bsc, 'getCalculationTitle')
        addColumn(bsc, 'getCalculationUID')
        addColumn(bsc, 'getCalibrationExpiryDate')
        addColumn(bsc, 'getCategoryTitle')
        addColumn(bsc, 'getCategoryUID')
        addColumn(bsc, 'getClientUID')
        addColumn(bsc, 'getDepartmentTitle')
        addColumn(bsc, 'getDuplicateVariation')
        addColumn(bsc, 'getFormula')
        addColumn(bsc, 'getFullname')
        addColumn(bsc, 'getHazardous')
        addColumn(bsc, 'getInstrumentTitle')
        addColumn(bsc, 'getKeyword')
        addColumn(bsc, 'getManagerName')
        addColumn(bsc, 'getManagerPhone')
        addColumn(bsc, 'getManagerEmail')
        addColumn(bsc, 'getMaxTimeAllowed')
        addColumn(bsc, 'getModel')
        addColumn(bsc, 'getName')
        addColumn(bsc, 'getPointOfCapture')
        addColumn(bsc, 'getPrice')
        addColumn(bsc, 'getSamplePointTitle')
        addColumn(bsc, 'getSamplePointUID')
        addColumn(bsc, 'getSampleTypeTitle')
        addColumn(bsc, 'getSampleTypeUID')
        addColumn(bsc, 'getServiceUID')
        addColumn(bsc, 'getTotalPrice')
        addColumn(bsc, 'getUnit')
        addColumn(bsc, 'getVATAmount')
        addColumn(bsc, 'getVolume')

        # portal_catalog
        pc = getToolByName(portal, 'portal_catalog', None)
        if pc is None:
            logger.warning('Could not find the portal_catalog tool.')
            return
        addIndex(pc, 'Analyst', 'FieldIndex')
        addColumn(pc, 'Analyst')
        # TODO: Nmrl
        addColumn(pc, 'getProvince')
        addColumn(pc, 'getDistrict')

        # Setting up all LIMS catalogs defined in catalog folder
        setup_catalogs(portal, getCatalogDefinitions())


def setupVarious(context):
    """
    Final Bika import steps.
    """
    if context.readDataFile('bika.lims_various.txt') is None:
        return

    site = context.getSite()
    gen = BikaGenerator()
    gen.setupGroupsAndRoles(site)
    gen.setupPortalContent(site)
    gen.setupCatalogs(site)

    # Hide navbar items no longer used
    # https://github.com/senaite/senaite.core/pull/1304
    hide_navbar_items(site)


def hide_navbar_items(portal):
    """Remove navbar items that are no longer used
    """
    logger.info("Removing items from navigation bar ...")

    # Get the list of object ids for portal
    object_ids = portal.objectIds()
    object_ids = filter(lambda id: id in object_ids, NAV_BAR_ITEMS_TO_HIDE)
    for object_id in object_ids:
        item = portal[object_id]
        item.setExcludeFromNav(True)
        item.reindexObject()

1			# -- coding: utf-8 --
2			#
3			# This file is part of SENAITE.CORE
4			#
5			# Copyright 2018 by it's authors.
6			# Some rights reserved. See LICENSE.rst, CONTRIBUTORS.rst.
7
8			from Products.CMFCore.utils import getToolByName
9			from bika.lims import logger
10			from bika.lims.catalog import getCatalogDefinitions
11			from bika.lims.catalog import setup_catalogs
12			from bika.lims.config import *
13
14			GROUPS = {
15			# Dictionary {group_name: [roles]}
16			"Analysts": ["Analyst", ],
17			"Clients": ["Client", ],
18			"LabClerks": ["LabClerk",],
19			# TODO Unbound LabManagers from Manager role
20			"LabManagers": ["LabManager", "Manager", ],
21			"Preservers": ["Perserver", ],
22			"Publishers": ["Publisher", ],
23			"Verifiers": ["Verifier", ],
24			"Samplers": ["Sampler", ],
25			"RegulatoryInspectors": ["RegulatoryInspector", ],
26			"SamplingCoordinators": ["SamplingCoordinator", ],
27			}
28
29			NAV_BAR_ITEMS_TO_HIDE = (
30			# List of items to hide from navigation bar
31			"arimports",
32			"pricelists",
33			"supplyorders",
34			)
35
36			# noinspection PyClassHasNoInit
37			class Empty:
38			pass
39
40
41			class BikaGenerator(object):
42			def __init__(self):
43			pass
44
45			def setupPortalContent(self, portal):
46			""" Setup Bika site structure """
47			self.remove_default_content(portal)
48			self.reindex_structure(portal)
49
50			portal.bika_setup.laboratory.unmarkCreationFlag()
51			portal.bika_setup.laboratory.reindexObject()
52
53			def reindex_structure(self, portal):
54			# index objects - importing through GenericSetup doesn't
55			for obj_id in ('clients',
56			'batches',
57			'pricelists',
58			'bika_setup',
59			'methods',
60			'analysisrequests',
61			'referencesamples',
62			'supplyorders',
63			'worksheets',
64			'reports',
65			):
66			try:
67			obj = portal[obj_id]
68			obj.unmarkCreationFlag()
69			obj.reindexObject()
70			except AttributeError:
71			pass
72
73			for obj_id in ('bika_analysiscategories',
74			'bika_analysisservices',
75			'bika_attachmenttypes',
76			'bika_batchlabels',
77			'bika_calculations',
78			'bika_departments',
79			'bika_containers',
80			'bika_containertypes',
81			'bika_preservations',
82			'bika_identifiertypes',
83			'bika_instruments',
84			'bika_instrumenttypes',
85			'bika_instrumentlocations',
86			'bika_analysisspecs',
87			'bika_analysisprofiles',
88			'bika_artemplates',
89			'bika_labcontacts',
90			'bika_labproducts',
91			'bika_manufacturers',
92			'bika_sampleconditions',
93			'bika_samplematrices',
94			'bika_samplingdeviations',
95			'bika_samplepoints',
96			'bika_sampletypes',
97			'bika_srtemplates',
98			'bika_reflexrulefolder',
99			'bika_storagelocations',
100			'bika_subgroups',
101			'bika_suppliers',
102			'bika_referencedefinitions',
103			'bika_worksheettemplates'):
104			try:
105			obj = portal.bika_setup[obj_id]
106			obj.unmarkCreationFlag()
107			obj.reindexObject()
108			except AttributeError:
109			pass
110
111			def remove_default_content(self, portal):
112			# remove undesired content objects
113			del_ids = []
114			for obj_id in ['Members', 'news', 'events']:
115			if obj_id in portal:
116			del_ids.append(obj_id)
117			if del_ids:
118			portal.manage_delObjects(ids=del_ids)
119
120			def setupGroupsAndRoles(self, portal):
121			# Create groups
122			groups_ids = portal.portal_groups.listGroupIds()
123			groups_ids = filter(lambda gr: gr not in groups_ids, GROUPS.keys())
124			for group_id in groups_ids:
125			portal.portal_groups.addGroup(group_id, title=group_id,
126			roles=GROUPS[group_id])
127
128			def setupCatalogs(self, portal):
129			# an item should belong to only one catalog.
130			# that way looking it up means first looking up the catalog
131			# in which it is indexed, as well as making it cheaper to index.
132
133			def addIndex(cat, *args):
134			# noinspection PyBroadException
135			try:
136			cat.addIndex(*args)
137			except:
138			pass
139
140			def addColumn(cat, col):
141			# noinspection PyBroadException
142			try:
143			cat.addColumn(col)
144			except:
145			pass
146
147			# create lexicon
148			wordSplitter = Empty()
149			wordSplitter.group = 'Word Splitter'
150			wordSplitter.name = 'Unicode Whitespace splitter'
151			caseNormalizer = Empty()
152			caseNormalizer.group = 'Case Normalizer'
153			caseNormalizer.name = 'Unicode Case Normalizer'
154			stopWords = Empty()
155			stopWords.group = 'Stop Words'
156			stopWords.name = 'Remove listed and single char words'
157			elem = [wordSplitter, caseNormalizer, stopWords]
158			zc_extras = Empty()
159			zc_extras.index_type = 'Okapi BM25 Rank'
160			zc_extras.lexicon_id = 'Lexicon'
161
162			# bika_catalog
163
164			bc = getToolByName(portal, 'bika_catalog', None)
165			if bc is None:
166			logger.warning('Could not find the bika_catalog tool.')
167			return
168
169			# noinspection PyBroadException
170			try:
171			bc.manage_addProduct['ZCTextIndex'].manage_addLexicon(
172			'Lexicon', 'Lexicon', elem)
173			except:
174			logger.warning('Could not add ZCTextIndex to bika_catalog')
175			pass
176
177			at = getToolByName(portal, 'archetype_tool')
178			at.setCatalogsByType('Batch', ['bika_catalog', 'portal_catalog'])
179			# TODO Remove in >v1.3.0
180			at.setCatalogsByType('Sample', ['bika_catalog', 'portal_catalog'])
181			# TODO Remove in >v1.3.0
182			at.setCatalogsByType('SamplePartition',
183			['bika_catalog', 'portal_catalog'])
184			at.setCatalogsByType('ReferenceSample',
185			['bika_catalog', 'portal_catalog'])
186
187			addIndex(bc, 'path', 'ExtendedPathIndex', 'getPhysicalPath')
188			addIndex(bc, 'allowedRolesAndUsers', 'KeywordIndex')
189			addIndex(bc, 'UID', 'FieldIndex')
190			addIndex(bc, 'SearchableText', 'ZCTextIndex', zc_extras)
191			addIndex(bc, 'Title', 'ZCTextIndex', zc_extras)
192			addIndex(bc, 'Description', 'ZCTextIndex', zc_extras)
193			addIndex(bc, 'id', 'FieldIndex')
194			addIndex(bc, 'getId', 'FieldIndex')
195			addIndex(bc, 'Type', 'FieldIndex')
196			addIndex(bc, 'portal_type', 'FieldIndex')
197			addIndex(bc, 'created', 'DateIndex')
198			addIndex(bc, 'Creator', 'FieldIndex')
199			addIndex(bc, 'getObjPositionInParent', 'GopipIndex')
200			addIndex(bc, 'title', 'FieldIndex', 'Title')
201			addIndex(bc, 'sortable_title', 'FieldIndex')
202			addIndex(bc, 'description', 'FieldIndex', 'Description')
203			addIndex(bc, 'review_state', 'FieldIndex')
204			addIndex(bc, 'Identifiers', 'KeywordIndex')
205			addIndex(bc, 'is_active', 'BooleanIndex')
206			addIndex(bc, 'BatchDate', 'DateIndex')
207			addIndex(bc, 'getClientTitle', 'FieldIndex')
208			addIndex(bc, 'getClientUID', 'FieldIndex')
209			addIndex(bc, 'getClientID', 'FieldIndex')
210			addIndex(bc, 'getClientBatchID', 'FieldIndex')
211			addIndex(bc, 'getDateReceived', 'DateIndex')
212			addIndex(bc, 'getDateSampled', 'DateIndex')
213			addIndex(bc, 'getDueDate', 'DateIndex')
214			addIndex(bc, 'getExpiryDate', 'DateIndex')
215			addIndex(bc, 'getReferenceDefinitionUID', 'FieldIndex')
216			addIndex(bc, 'getSampleTypeTitle', 'FieldIndex')
217			addIndex(bc, 'getSampleTypeUID', 'FieldIndex')
218
219			# https://github.com/senaite/senaite.core/pull/1091
220			addIndex(bc, 'getSupportedServices', 'KeywordIndex')
221			addIndex(bc, 'getBlank', 'BooleanIndex')
222			addIndex(bc, 'isValid', 'BooleanIndex')
223
224			addColumn(bc, 'path')
225			addColumn(bc, 'UID')
226			addColumn(bc, 'id')
227			addColumn(bc, 'getId')
228			addColumn(bc, 'Type')
229			addColumn(bc, 'portal_type')
230			addColumn(bc, 'creator')
231			addColumn(bc, 'Created')
232			addColumn(bc, 'Title')
233			addColumn(bc, 'Description')
234			addColumn(bc, 'sortable_title')
235			addColumn(bc, 'getClientTitle')
236			addColumn(bc, 'getClientID')
237			addColumn(bc, 'getClientBatchID')
238			addColumn(bc, 'getSampleTypeTitle')
239			addColumn(bc, 'getDateReceived')
240			addColumn(bc, 'getDateSampled')
241			addColumn(bc, 'review_state')
242
243			# bika_setup_catalog
244
245			bsc = getToolByName(portal, 'bika_setup_catalog', None)
246			if bsc is None:
247			logger.warning('Could not find the setup catalog tool.')
248			return
249
250			# noinspection PyBroadException
251			try:
252			bsc.manage_addProduct['ZCTextIndex'].manage_addLexicon(
253			'Lexicon', 'Lexicon', elem)
254			except:
255			logger.warning('Could not add ZCTextIndex to bika_setup_catalog')
256			pass
257
258			at = getToolByName(portal, 'archetype_tool')
259			at.setCatalogsByType('Department',
260			['bika_setup_catalog', "portal_catalog", ])
261			at.setCatalogsByType('Container', ['bika_setup_catalog', ])
262			at.setCatalogsByType('ContainerType', ['bika_setup_catalog', ])
263			at.setCatalogsByType('AnalysisCategory', ['bika_setup_catalog', ])
264			at.setCatalogsByType('AnalysisService',
265			['bika_setup_catalog', 'portal_catalog'])
266			at.setCatalogsByType('AnalysisSpec', ['bika_setup_catalog', ])
267			at.setCatalogsByType('SampleCondition', ['bika_setup_catalog'])
268			at.setCatalogsByType('SampleMatrix', ['bika_setup_catalog', ])
269			at.setCatalogsByType('SampleType',
270			['bika_setup_catalog', 'portal_catalog'])
271			at.setCatalogsByType('SamplePoint',
272			['bika_setup_catalog', 'portal_catalog'])
273			at.setCatalogsByType('StorageLocation',
274			['bika_setup_catalog', 'portal_catalog'])
275			at.setCatalogsByType('SamplingDeviation', ['bika_setup_catalog', ])
276			at.setCatalogsByType('IdentifierType', ['bika_setup_catalog', ])
277			at.setCatalogsByType('Instrument',
278			['bika_setup_catalog', 'portal_catalog'])
279			at.setCatalogsByType('InstrumentType',
280			['bika_setup_catalog', 'portal_catalog'])
281			at.setCatalogsByType('InstrumentLocation',
282			['bika_setup_catalog', 'portal_catalog'])
283			at.setCatalogsByType('Method', ['bika_setup_catalog', 'portal_catalog'])
284			at.setCatalogsByType('Multifile', ['bika_setup_catalog'])
285			at.setCatalogsByType('AttachmentType', ['bika_setup_catalog', ])
286			at.setCatalogsByType('Attachment', ['portal_catalog'])
287			at.setCatalogsByType('Calculation',
288			['bika_setup_catalog', 'portal_catalog'])
289			at.setCatalogsByType('AnalysisProfile',
290			['bika_setup_catalog', 'portal_catalog'])
291			at.setCatalogsByType('ARTemplate',
292			['bika_setup_catalog', 'portal_catalog'])
293			at.setCatalogsByType('LabProduct',
294			['bika_setup_catalog', 'portal_catalog'])
295			at.setCatalogsByType('LabContact',
296			['bika_setup_catalog', 'portal_catalog'])
297			at.setCatalogsByType('Manufacturer',
298			['bika_setup_catalog', 'portal_catalog'])
299			at.setCatalogsByType('Preservation', ['bika_setup_catalog', ])
300			at.setCatalogsByType('ReferenceDefinition',
301			['bika_setup_catalog', 'portal_catalog'])
302			at.setCatalogsByType('SRTemplate',
303			['bika_setup_catalog', 'portal_catalog'])
304			at.setCatalogsByType('SubGroup', ['bika_setup_catalog', ])
305			at.setCatalogsByType('Supplier',
306			['bika_setup_catalog', 'portal_catalog'])
307			at.setCatalogsByType('Unit', ['bika_setup_catalog', ])
308			at.setCatalogsByType('WorksheetTemplate',
309			['bika_setup_catalog', 'portal_catalog'])
310			at.setCatalogsByType('BatchLabel', ['bika_setup_catalog', ])
311
312			addIndex(bsc, 'path', 'ExtendedPathIndex', 'getPhysicalPath')
313			addIndex(bsc, 'allowedRolesAndUsers', 'KeywordIndex')
314			addIndex(bsc, 'UID', 'FieldIndex')
315			addIndex(bsc, 'SearchableText', 'ZCTextIndex', zc_extras)
316			addIndex(bsc, 'Title', 'ZCTextIndex', zc_extras)
317			addIndex(bsc, 'Description', 'ZCTextIndex', zc_extras)
318			addIndex(bsc, 'id', 'FieldIndex')
319			addIndex(bsc, 'getId', 'FieldIndex')
320			addIndex(bsc, 'Type', 'FieldIndex')
321			addIndex(bsc, 'portal_type', 'FieldIndex')
322			addIndex(bsc, 'created', 'DateIndex')
323			addIndex(bsc, 'Creator', 'FieldIndex')
324			addIndex(bsc, 'getObjPositionInParent', 'GopipIndex')
325			addIndex(bc, 'Identifiers', 'KeywordIndex')
326
327			addIndex(bsc, 'title', 'FieldIndex', 'Title')
328			addIndex(bsc, 'sortable_title', 'FieldIndex')
329			addIndex(bsc, 'description', 'FieldIndex', 'Description')
330
331			addIndex(bsc, 'review_state', 'FieldIndex')
332
333			addIndex(bsc, 'getAccredited', 'FieldIndex')
334			addIndex(bsc, 'getAnalyst', 'FieldIndex')
335			addIndex(bsc, 'getBlank', 'FieldIndex')
336			addIndex(bsc, 'getCalculationTitle', 'FieldIndex')
337			addIndex(bsc, 'getCalculationUID', 'FieldIndex')
338			addIndex(bsc, 'getCalibrationExpiryDate', 'FieldIndex')
339			addIndex(bsc, 'getCategoryTitle', 'FieldIndex')
340			addIndex(bsc, 'getCategoryUID', 'FieldIndex')
341			addIndex(bsc, 'getClientUID', 'FieldIndex')
342			addIndex(bsc, 'getDepartmentTitle', 'FieldIndex')
343			addIndex(bsc, 'getDocumentID', 'FieldIndex')
344			addIndex(bsc, 'getDuplicateVariation', 'FieldIndex')
345			addIndex(bsc, 'getFormula', 'FieldIndex')
346			addIndex(bsc, 'getFullname', 'FieldIndex')
347			addIndex(bsc, 'getHazardous', 'FieldIndex')
348			addIndex(bsc, 'getInstrumentLocationName', 'FieldIndex')
349			addIndex(bsc, 'getInstrumentTitle', 'FieldIndex')
350			addIndex(bsc, 'getInstrumentType', 'FieldIndex')
351			addIndex(bsc, 'getInstrumentTypeName', 'FieldIndex')
352			addIndex(bsc, 'getKeyword', 'FieldIndex')
353			addIndex(bsc, 'getManagerEmail', 'FieldIndex')
354			addIndex(bsc, 'getManagerName', 'FieldIndex')
355			addIndex(bsc, 'getManagerPhone', 'FieldIndex')
356			addIndex(bsc, 'getMaxTimeAllowed', 'FieldIndex')
357			addIndex(bsc, 'getMethodID', 'FieldIndex')
358			addIndex(bsc, 'getAvailableMethodUIDs', 'KeywordIndex')
359			addIndex(bsc, 'getModel', 'FieldIndex')
360			addIndex(bsc, 'getName', 'FieldIndex')
361			addIndex(bsc, 'getPointOfCapture', 'FieldIndex')
362			addIndex(bsc, 'getPrice', 'FieldIndex')
363			addIndex(bsc, 'getSamplePointTitle', 'KeywordIndex')
364			addIndex(bsc, 'getSamplePointUID', 'FieldIndex')
365			addIndex(bsc, 'getSampleTypeTitle', 'FieldIndex')
366			addIndex(bsc, 'getSampleTypeTitles', 'KeywordIndex')
367			addIndex(bsc, 'getSampleTypeUID', 'FieldIndex')
368			addIndex(bsc, 'getServiceUID', 'FieldIndex')
369			addIndex(bsc, 'getServiceUIDs', 'KeywordIndex')
370			addIndex(bsc, 'getTotalPrice', 'FieldIndex')
371			addIndex(bsc, 'getUnit', 'FieldIndex')
372			addIndex(bsc, 'getVATAmount', 'FieldIndex')
373			addIndex(bsc, 'getVolume', 'FieldIndex')
374			addIndex(bsc, 'is_active', 'BooleanIndex')
375
376			addColumn(bsc, 'path')
377			addColumn(bsc, 'UID')
378			addColumn(bsc, 'id')
379			addColumn(bsc, 'getId')
380			addColumn(bsc, 'Type')
381			addColumn(bsc, 'portal_type')
382			addColumn(bsc, 'getObjPositionInParent')
383
384			addColumn(bsc, 'Title')
385			addColumn(bsc, 'Description')
386			addColumn(bsc, 'title')
387			addColumn(bsc, 'sortable_title')
388			addColumn(bsc, 'description')
389			addColumn(bsc, 'review_state')
390			addColumn(bsc, 'getAccredited')
391			addColumn(bsc, 'getInstrumentType')
392			addColumn(bsc, 'getInstrumentTypeName')
393			addColumn(bsc, 'getInstrumentLocationName')
394			addColumn(bsc, 'getBlank')
395			addColumn(bsc, 'getCalculationTitle')
396			addColumn(bsc, 'getCalculationUID')
397			addColumn(bsc, 'getCalibrationExpiryDate')
398			addColumn(bsc, 'getCategoryTitle')
399			addColumn(bsc, 'getCategoryUID')
400			addColumn(bsc, 'getClientUID')
401			addColumn(bsc, 'getDepartmentTitle')
402			addColumn(bsc, 'getDuplicateVariation')
403			addColumn(bsc, 'getFormula')
404			addColumn(bsc, 'getFullname')
405			addColumn(bsc, 'getHazardous')
406			addColumn(bsc, 'getInstrumentTitle')
407			addColumn(bsc, 'getKeyword')
408			addColumn(bsc, 'getManagerName')
409			addColumn(bsc, 'getManagerPhone')
410			addColumn(bsc, 'getManagerEmail')
411			addColumn(bsc, 'getMaxTimeAllowed')
412			addColumn(bsc, 'getModel')
413			addColumn(bsc, 'getName')
414			addColumn(bsc, 'getPointOfCapture')
415			addColumn(bsc, 'getPrice')
416			addColumn(bsc, 'getSamplePointTitle')
417			addColumn(bsc, 'getSamplePointUID')
418			addColumn(bsc, 'getSampleTypeTitle')
419			addColumn(bsc, 'getSampleTypeUID')
420			addColumn(bsc, 'getServiceUID')
421			addColumn(bsc, 'getTotalPrice')
422			addColumn(bsc, 'getUnit')
423			addColumn(bsc, 'getVATAmount')
424			addColumn(bsc, 'getVolume')
425
426			# portal_catalog
427			pc = getToolByName(portal, 'portal_catalog', None)
428			if pc is None:
429			logger.warning('Could not find the portal_catalog tool.')
430			return
431			addIndex(pc, 'Analyst', 'FieldIndex')
432			addColumn(pc, 'Analyst')
433			# TODO: Nmrl
434			addColumn(pc, 'getProvince')
435			addColumn(pc, 'getDistrict')
436
437			# Setting up all LIMS catalogs defined in catalog folder
438			setup_catalogs(portal, getCatalogDefinitions())
439
440
441			def setupVarious(context):
442			"""
443			Final Bika import steps.
444			"""
445			if context.readDataFile('bika.lims_various.txt') is None:
446			return
447
448			site = context.getSite()
449			gen = BikaGenerator()
450			gen.setupGroupsAndRoles(site)
451			gen.setupPortalContent(site)
452			gen.setupCatalogs(site)
453
454			# Hide navbar items no longer used
455			# https://github.com/senaite/senaite.core/pull/1304
456			hide_navbar_items(site)
457
458
459			def hide_navbar_items(portal):
460			"""Remove navbar items that are no longer used
461			"""
462			logger.info("Removing items from navigation bar ...")
463
464			# Get the list of object ids for portal
465			object_ids = portal.objectIds()
466			object_ids = filter(lambda id: id in object_ids, NAV_BAR_ITEMS_TO_HIDE)
467			for object_id in object_ids:
468			item = portal[object_id]
469			item.setExcludeFromNav(True)
470			item.reindexObject()

senaite / senaite.core

Push — master ( feb3de...56c573 )

BikaGenerator.setupCatalogs() C

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