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# -*- coding: utf-8 -*- |
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# |
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# This file is part of SENAITE.CORE |
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# |
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# Copyright 2018 by it's authors. |
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# Some rights reserved. See LICENSE.rst, CONTRIBUTORS.rst. |
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import collections |
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from datetime import datetime |
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from bika.lims import api |
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from bika.lims import bikaMessageFactory as _ |
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from bika.lims import logger |
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from bika.lims.browser import BrowserView |
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from bika.lims.browser.analyses import AnalysesView |
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from bika.lims.browser.bika_listing import BikaListingView |
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from bika.lims.browser.chart.analyses import EvolutionChart |
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from bika.lims.utils import get_image |
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from bika.lims.utils import get_link |
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from bika.lims.utils import t |
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from plone.app.layout.globals.interfaces import IViewView |
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from plone.memoize import view |
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from Products.ATContentTypes.utils import DT2dt |
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from Products.Five.browser.pagetemplatefile import ViewPageTemplateFile |
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from zope.interface import implements |
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class ViewView(BrowserView): |
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"""Reference Sample View |
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""" |
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implements(IViewView) |
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template = ViewPageTemplateFile("templates/referencesample_view.pt") |
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def __init__(self, context, request): |
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super(ViewView, self).__init__(context, request) |
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self.icon = "{}/{}".format( |
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self.portal_url, |
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"++resource++bika.lims.images/referencesample_big.png") |
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def __call__(self): |
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self.results = {} # {category_title: listofdicts} |
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for r in self.context.getReferenceResults(): |
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service = api.get_object_by_uid(r["uid"]) |
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cat = service.getCategoryTitle() |
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if cat not in self.results: |
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self.results[cat] = [] |
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r["service"] = service |
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self.results[cat].append(r) |
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self.categories = self.results.keys() |
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self.categories.sort() |
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return self.template() |
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class ReferenceAnalysesViewView(BrowserView): |
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""" View of Reference Analyses linked to the Reference Sample. |
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""" |
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implements(IViewView) |
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template = ViewPageTemplateFile( |
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"templates/referencesample_analyses.pt") |
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def __init__(self, context, request): |
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super(ReferenceAnalysesViewView, self).__init__(context, request) |
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self.title = self.context.translate(_("Reference Analyses")) |
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self.icon = "{}/{}".format( |
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self.portal_url, |
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"++resource++bika.lims.images/referencesample_big.png") |
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def __call__(self): |
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return self.template() |
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def get_analyses_table(self): |
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""" Returns the table of Reference Analyses |
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""" |
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return self.get_analyses_view().contents_table() |
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def get_analyses_table_view(self): |
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view_name = "table_referenceanalyses" |
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view = api.get_view( |
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view_name, context=self.context, request=self.request) |
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# Call listing hooks |
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view.update() |
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view.before_render() |
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# TODO Refactor QC Charts as React Components |
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# The current QC Chart is rendered by looking at the value from a |
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# hidden input with id "graphdata", that is rendered below the contents |
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# listing (see referenceanalyses.pt). |
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# The value is a json, is built by folderitem function and is returned |
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# by self.chart.get_json(). This function is called directly by the |
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# template on render, but the template itself does not directly render |
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# the contents listing, but is done asyncronously. |
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# Hence the function at this point returns an empty dictionary because |
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# folderitems hasn't been called yet. As a result, the chart appears |
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# empty. Here, we force folderitems function to be called in order to |
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# ensure the graphdata is filled before the template is rendered. |
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view.get_folderitems() |
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return view |
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class ReferenceAnalysesView(AnalysesView): |
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"""Reference Analyses on this sample |
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""" |
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def __init__(self, context, request): |
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super(ReferenceAnalysesView, self).__init__(context, request) |
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self.form_id = "{}_qcanalyses".format(api.get_uid(context)) |
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self.allow_edit = False |
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self.show_select_column = False |
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self.show_search = False |
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self.omit_form = True |
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self.show_search = False |
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self.contentFilter = { |
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"portal_type": "ReferenceAnalysis", |
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"path": { |
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"query": "/".join(self.context.getPhysicalPath()), |
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"level": 0} |
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} |
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self.columns = collections.OrderedDict(( |
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("id", { |
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"title": _("ID"), |
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"sortable": False, |
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"toggle": False}), |
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("getReferenceAnalysesGroupID", { |
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"title": _("QC Sample ID"), |
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"sortable": False, |
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"toggle": True}), |
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("Category", { |
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"title": _("Category"), |
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"sortable": False, |
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"toggle": True}), |
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("Service", { |
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"title": _("Service"), |
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"sortable": False, |
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"toggle": True}), |
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("Worksheet", { |
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"title": _("Worksheet"), |
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"sortable": False, |
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"toggle": True}), |
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("Method", { |
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"title": _("Method"), |
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"sortable": False, |
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"toggle": True}), |
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("Instrument", { |
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"title": _("Instrument"), |
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"sortable": False, |
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"toggle": True}), |
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("Result", { |
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"title": _("Result"), |
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"sortable": False, |
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"toggle": True}), |
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("CaptureDate", { |
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"title": _("Captured"), |
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"sortable": False, |
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"toggle": True}), |
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("Uncertainty", { |
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"title": _("+-"), |
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"sortable": False, |
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"toggle": True}), |
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("DueDate", { |
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"title": _("Due Date"), |
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"sortable": False, |
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"toggle": True}), |
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("retested", { |
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"title": _("Retested"), |
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"sortable": False, |
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"type": "boolean", |
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"toggle": True}), |
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("state_title", { |
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"title": _("State"), |
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"sortable": False, |
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"toggle": True}), |
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)) |
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self.review_states = [ |
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{ |
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"id": "default", |
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"title": _("All"), |
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"contentFilter": {}, |
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"transitions": [], |
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"columns": self.columns.keys() |
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}, |
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] |
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self.chart = EvolutionChart() |
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def is_analysis_edition_allowed(self, analysis_brain): |
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"""see AnalysesView.is_analysis_edition_allowed |
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""" |
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return False |
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def folderitem(self, obj, item, index): |
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"""Service triggered each time an item is iterated in folderitems. |
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The use of this service prevents the extra-loops in child objects. |
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:obj: the instance of the class to be foldered |
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:item: dict containing the properties of the object to be used by |
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the template |
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:index: current index of the item |
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""" |
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item = super(ReferenceAnalysesView, self).folderitem(obj, item, index) |
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if not item: |
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return None |
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item["Category"] = obj.getCategoryTitle |
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ref_analysis = api.get_object(obj) |
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ws = ref_analysis.getWorksheet() |
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if not ws: |
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logger.warn( |
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"No Worksheet found for ReferenceAnalysis {}" |
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.format(obj.getId)) |
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else: |
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item["Worksheet"] = ws.Title() |
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anchor = "<a href='%s'>%s</a>" % (ws.absolute_url(), ws.Title()) |
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item["replace"]["Worksheet"] = anchor |
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# Add the analysis to the QC Chart |
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self.chart.add_analysis(obj) |
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return item |
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class ReferenceResultsView(BikaListingView): |
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"""Listing of all reference results |
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""" |
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def __init__(self, context, request): |
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super(ReferenceResultsView, self).__init__(context, request) |
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self.catalog = "bika_setup_catalog" |
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self.contentFilter = { |
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"portal_type": "AnalysisService", |
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"UID": self.get_reference_results().keys(), |
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"is_active": True, |
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"sort_on": "sortable_title", |
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"sort_order": "ascending", |
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} |
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self.context_actions = {} |
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self.title = self.context.translate(_("Reference Values")) |
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self.icon = "{}/{}".format( |
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self.portal_url, |
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"/++resource++bika.lims.images/referencesample_big.png" |
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) |
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self.show_select_row = False |
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self.show_workflow_action_buttons = False |
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self.show_select_column = False |
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self.pagesize = 999999 |
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self.show_search = False |
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# Categories |
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if self.show_categories_enabled(): |
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self.categories = [] |
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self.show_categories = True |
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self.expand_all_categories = True |
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self.category_index = "getCategoryTitle" |
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self.columns = collections.OrderedDict(( |
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("Title", { |
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"title": _("Analysis Service"), |
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"sortable": False}), |
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("result", { |
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"title": _("Expected Result"), |
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"sortable": False}), |
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("error", { |
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"title": _("Permitted Error %"), |
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"sortable": False}), |
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("min", { |
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"title": _("Min"), |
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"sortable": False}), |
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("max", { |
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"title": _("Max"), |
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"sortable": False}), |
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)) |
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self.review_states = [ |
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{ |
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"id": "default", |
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"title": _("All"), |
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"contentFilter": {}, |
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"columns": self.columns.keys() |
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} |
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] |
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def update(self): |
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"""Update hook |
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""" |
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super(ReferenceResultsView, self).update() |
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self.categories.sort() |
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@view.memoize |
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def show_categories_enabled(self): |
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"""Check in the setup if categories are enabled |
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""" |
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return self.context.bika_setup.getCategoriseAnalysisServices() |
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@view.memoize |
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def get_reference_results(self): |
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"""Return a mapping of Analysis Service -> Reference Results |
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""" |
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referenceresults = self.context.getReferenceResults() |
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return dict(map(lambda rr: (rr.get("uid"), rr), referenceresults)) |
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def folderitem(self, obj, item, index): |
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"""Service triggered each time an item is iterated in folderitems. |
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The use of this service prevents the extra-loops in child objects. |
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:obj: the instance of the class to be foldered |
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:item: dict containing the properties of the object to be used by |
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the template |
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:index: current index of the item |
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""" |
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uid = api.get_uid(obj) |
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url = api.get_url(obj) |
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title = api.get_title(obj) |
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# get the category |
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if self.show_categories_enabled(): |
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category = obj.getCategoryTitle() |
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if category not in self.categories: |
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self.categories.append(category) |
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item["category"] = category |
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329
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|
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|
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330
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|
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ref_results = self.get_reference_results() |
|
331
|
|
|
ref_result = ref_results.get(uid) |
|
332
|
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|
|
333
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|
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item["Title"] = title |
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334
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|
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item["replace"]["Title"] = get_link(url, value=title) |
|
335
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|
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item["result"] = ref_result.get("result") |
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336
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|
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item["min"] = ref_result.get("min") |
|
337
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|
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item["max"] = ref_result.get("max") |
|
338
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|
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|
|
339
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|
|
# Icons |
|
340
|
|
|
after_icons = "" |
|
341
|
|
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if obj.getAccredited(): |
|
342
|
|
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after_icons += get_image( |
|
343
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|
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"accredited.png", title=_("Accredited")) |
|
344
|
|
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if obj.getAttachmentOption() == "r": |
|
345
|
|
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after_icons += get_image( |
|
346
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|
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"attach_reqd.png", title=_("Attachment required")) |
|
347
|
|
|
if obj.getAttachmentOption() == "n": |
|
348
|
|
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after_icons += get_image( |
|
349
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|
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"attach_no.png", title=_("Attachment not permitted")) |
|
350
|
|
|
if after_icons: |
|
351
|
|
|
item["after"]["Title"] = after_icons |
|
352
|
|
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|
|
353
|
|
|
return item |
|
354
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|
355
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|
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|
|
356
|
|
|
class ReferenceSamplesView(BikaListingView): |
|
357
|
|
|
"""Main reference samples folder view |
|
358
|
|
|
""" |
|
359
|
|
|
|
|
360
|
|
|
def __init__(self, context, request): |
|
361
|
|
|
super(ReferenceSamplesView, self).__init__(context, request) |
|
362
|
|
|
|
|
363
|
|
|
self.catalog = "bika_catalog" |
|
364
|
|
|
|
|
365
|
|
|
self.contentFilter = { |
|
366
|
|
|
"portal_type": "ReferenceSample", |
|
367
|
|
|
"sort_on": "sortable_title", |
|
368
|
|
|
"sort_order": "ascending", |
|
369
|
|
|
"path": {"query": ["/"], "level": 0}, |
|
370
|
|
|
} |
|
371
|
|
|
|
|
372
|
|
|
self.context_actions = {} |
|
373
|
|
|
self.title = self.context.translate(_("Reference Samples")) |
|
374
|
|
|
self.icon = "{}/{}".format( |
|
375
|
|
|
self.portal_url, |
|
376
|
|
|
"++resource++bika.lims.images/referencesample_big.png") |
|
377
|
|
|
|
|
378
|
|
|
self.show_select_column = True |
|
379
|
|
|
self.pagesize = 25 |
|
380
|
|
|
|
|
381
|
|
|
self.columns = collections.OrderedDict(( |
|
382
|
|
|
("ID", { |
|
383
|
|
|
"title": _("ID"), |
|
384
|
|
|
"index": "id"}), |
|
385
|
|
|
("Title", { |
|
386
|
|
|
"title": _("Title"), |
|
387
|
|
|
"index": "sortable_title", |
|
388
|
|
|
"toggle": True}), |
|
389
|
|
|
("Supplier", { |
|
390
|
|
|
"title": _("Supplier"), |
|
391
|
|
|
"toggle": True, |
|
392
|
|
|
"attr": "aq_parent.Title", |
|
393
|
|
|
"replace_url": "aq_parent.absolute_url"}), |
|
394
|
|
|
("Manufacturer", { |
|
395
|
|
|
"title": _("Manufacturer"), |
|
396
|
|
|
"toggle": True, |
|
397
|
|
|
"attr": "getManufacturer.Title", |
|
398
|
|
|
"replace_url": "getManufacturer.absolute_url"}), |
|
399
|
|
|
("Definition", { |
|
400
|
|
|
"title": _("Reference Definition"), |
|
401
|
|
|
"toggle": True, |
|
402
|
|
|
"attr": "getReferenceDefinition.Title", |
|
403
|
|
|
"replace_url": "getReferenceDefinition.absolute_url"}), |
|
404
|
|
|
("DateSampled", { |
|
405
|
|
|
"title": _("Date Sampled"), |
|
406
|
|
|
"index": "getDateSampled", |
|
407
|
|
|
"toggle": True}), |
|
408
|
|
|
("DateReceived", { |
|
409
|
|
|
"title": _("Date Received"), |
|
410
|
|
|
"index": "getDateReceived", |
|
411
|
|
|
"toggle": True}), |
|
412
|
|
|
("DateOpened", { |
|
413
|
|
|
"title": _("Date Opened"), |
|
414
|
|
|
"toggle": True}), |
|
415
|
|
|
("ExpiryDate", { |
|
416
|
|
|
"title": _("Expiry Date"), |
|
417
|
|
|
"index": "getExpiryDate", |
|
418
|
|
|
"toggle": True}), |
|
419
|
|
|
("state_title", { |
|
420
|
|
|
"title": _("State"), |
|
421
|
|
|
"toggle": True}), |
|
422
|
|
|
)) |
|
423
|
|
|
|
|
424
|
|
|
self.review_states = [ |
|
425
|
|
|
{ |
|
426
|
|
|
"id": "default", |
|
427
|
|
|
"title": _("Current"), |
|
428
|
|
|
"contentFilter": {"review_state": "current"}, |
|
429
|
|
|
"columns": self.columns.keys(), |
|
430
|
|
|
}, { |
|
431
|
|
|
"id": "expired", |
|
432
|
|
|
"title": _("Expired"), |
|
433
|
|
|
"contentFilter": {"review_state": "expired"}, |
|
434
|
|
|
"columns": self.columns.keys(), |
|
435
|
|
|
}, { |
|
436
|
|
|
"id": "disposed", |
|
437
|
|
|
"title": _("Disposed"), |
|
438
|
|
|
"contentFilter": {"review_state": "disposed"}, |
|
439
|
|
|
"columns": self.columns.keys(), |
|
440
|
|
|
}, { |
|
441
|
|
|
"id": "all", |
|
442
|
|
|
"title": _("All"), |
|
443
|
|
|
"contentFilter": {}, |
|
444
|
|
|
"columns": self.columns.keys(), |
|
445
|
|
|
} |
|
446
|
|
|
] |
|
447
|
|
|
|
|
448
|
|
|
def before_render(self): |
|
449
|
|
|
"""Before template render hook |
|
450
|
|
|
""" |
|
451
|
|
|
super(ReferenceSamplesView, self).before_render() |
|
452
|
|
|
# Don't allow any context actions on the Methods folder |
|
453
|
|
|
self.request.set("disable_border", 1) |
|
454
|
|
|
|
|
455
|
|
|
def folderitem(self, obj, item, index): |
|
456
|
|
|
"""Applies new properties to the item (Client) that is currently being |
|
457
|
|
|
rendered as a row in the list |
|
458
|
|
|
|
|
459
|
|
|
:param obj: client to be rendered as a row in the list |
|
460
|
|
|
:param item: dict representation of the client, suitable for the list |
|
461
|
|
|
:param index: current position of the item within the list |
|
462
|
|
|
:type obj: ATContentType/DexterityContentType |
|
463
|
|
|
:type item: dict |
|
464
|
|
|
:type index: int |
|
465
|
|
|
:return: the dict representation of the item |
|
466
|
|
|
:rtype: dict |
|
467
|
|
|
""" |
|
468
|
|
|
|
|
469
|
|
|
# XXX Refactor expiration to a proper place |
|
470
|
|
|
# ---------------------------- 8< ------------------------------------- |
|
471
|
|
|
if item.get("review_state", "current") == "current": |
|
472
|
|
|
# Check expiry date |
|
473
|
|
|
exdate = obj.getExpiryDate() |
|
474
|
|
|
if exdate: |
|
475
|
|
|
expirydate = DT2dt(exdate).replace(tzinfo=None) |
|
476
|
|
|
if (datetime.today() > expirydate): |
|
477
|
|
|
# Trigger expiration |
|
478
|
|
|
self.workflow.doActionFor(obj, "expire") |
|
479
|
|
|
item["review_state"] = "expired" |
|
480
|
|
|
item["obj"] = obj |
|
481
|
|
|
|
|
482
|
|
|
if self.contentFilter.get('review_state', '') \ |
|
483
|
|
|
and item.get('review_state', '') == 'expired': |
|
484
|
|
|
# This item must be omitted from the list |
|
485
|
|
|
return None |
|
486
|
|
|
# ---------------------------- >8 ------------------------------------- |
|
487
|
|
|
|
|
488
|
|
|
url = api.get_url(obj) |
|
489
|
|
|
id = api.get_id(obj) |
|
490
|
|
|
|
|
491
|
|
|
item["ID"] = id |
|
492
|
|
|
item["replace"]["ID"] = get_link(url, value=id) |
|
493
|
|
|
item["DateSampled"] = self.ulocalized_time( |
|
494
|
|
|
obj.getDateSampled(), long_format=True) |
|
495
|
|
|
item["DateReceived"] = self.ulocalized_time(obj.getDateReceived()) |
|
496
|
|
|
item["DateOpened"] = self.ulocalized_time(obj.getDateOpened()) |
|
497
|
|
|
item["ExpiryDate"] = self.ulocalized_time(obj.getExpiryDate()) |
|
498
|
|
|
|
|
499
|
|
|
# Icons |
|
500
|
|
|
after_icons = '' |
|
501
|
|
|
if obj.getBlank(): |
|
502
|
|
|
after_icons += get_image( |
|
503
|
|
|
"blank.png", title=t(_("Blank"))) |
|
504
|
|
|
if obj.getHazardous(): |
|
505
|
|
|
after_icons += get_image( |
|
506
|
|
|
"hazardous.png", title=t(_("Hazardous"))) |
|
507
|
|
|
if after_icons: |
|
508
|
|
|
item["after"]["ID"] = after_icons |
|
509
|
|
|
|
|
510
|
|
|
return item |
|
511
|
|
|
|