senaite.core.content.sampletemplate.SampleTemplate.setAutoPartition() - Code Metrics - Inspection of "Fix no selected services when adding a reference s..." - senaite/senaite.core - Measure and Improve Code Quality continuously with Scrutinizer

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Push — 2.x ( 0ba30f...7ab1ba )

by Jordi

created 2024-04-18 13:36 UTC

SampleTemplate.setAutoPartition() A

↳ Parent: senaite.core.content.sampletemplate

Complexity

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Total Lines	4
Code Lines	4

Duplication

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Ratio	0 %

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eloc	4
dl	0
loc	4
rs	10
c	0
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cc	1
nop	2

# -*- coding: utf-8 -*-
#
# This file is part of SENAITE.CORE.
#
# SENAITE.CORE is free software: you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation, version 2.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program; if not, write to the Free Software Foundation, Inc., 51
# Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#
# Copyright 2018-2024 by it's authors.
# Some rights reserved, see README and LICENSE.

from AccessControl import ClassSecurityInfo
from bika.lims import api
from bika.lims import senaiteMessageFactory as _
from bika.lims.interfaces import IDeactivable
from plone.autoform import directives
from plone.supermodel import model
from Products.CMFCore import permissions
from senaite.core.catalog import SETUP_CATALOG
from senaite.core.config.widgets import get_default_columns
from senaite.core.content.base import Container
from senaite.core.content.mixins import ClientAwareMixin
from senaite.core.interfaces import ISampleTemplate
from senaite.core.schema import UIDReferenceField
from senaite.core.schema.fields import DataGridRow
from senaite.core.z3cform.widgets.datagrid import DataGridWidgetFactory
from senaite.core.z3cform.widgets.listing.widget import ListingWidgetFactory
from senaite.core.z3cform.widgets.uidreference import UIDReferenceWidgetFactory
from zope import schema
from zope.deprecation import deprecate
from zope.interface import Interface
from zope.interface import implementer


class IServiceRecord(Interface):
    """Record schema for selected services and partitions
    """
    uid = schema.TextLine(title=u"Service UID")
    hidden = schema.Bool(title=u"Hidden")
    part_id = schema.TextLine(title=u"Partition ID")


class IPartitionRecord(Interface):
    """DataGrid Row for Sample Partition Schema
    """

    # PARTITION
    directives.widget("part_id",
                      style=u"width:100px!important")
    part_id = schema.TextLine(
        title=_(
            u"label_sampletemplate_partition_part_id",
            default=u"Partition ID"
        ),
        required=False,
        default=u"part-1")

    # CONTAINER
    directives.widget(
        "container",
        UIDReferenceWidgetFactory,
        catalog=SETUP_CATALOG,
        query={
            "portal_type": "SampleContainer",
            "is_active": True,
            "sort_on": "sortable_title",
            "sort_order": "ascending",
        },
        display_template="<a href='${url}'>${Title}</a>",
        columns=get_default_columns)
    container = UIDReferenceField(
        title=_(
            u"label_sampletemplate_partition_container",
            default=u"Container"
        ),
        allowed_types=("SampleContainer", ),
        multi_valued=False,
        required=False)

    # PRESERVATION
    directives.widget(
        "preservation",
        UIDReferenceWidgetFactory,
        catalog=SETUP_CATALOG,
        query={
            "portal_type": "SamplePreservation",
            "is_active": True,
            "sort_on": "sortable_title",
            "sort_order": "ascending",
        },
        display_template="<a href='${url}'>${Title}</a>",
        columns=get_default_columns)
    preservation = UIDReferenceField(
        title=_(
            u"label_sampletemplate_partition_preservation",
            default=u"Preservation"
        ),
        allowed_types=("SamplePreservation", ),
        multi_valued=False,
        required=False)

    # SAMPLE TYPE
    directives.widget(
        "sampletype",
        UIDReferenceWidgetFactory,
        catalog=SETUP_CATALOG,
        query={
            "portal_type": "SampleType",
            "is_active": True,
            "sort_on": "sortable_title",
            "sort_order": "ascending",
        },
        display_template="<a href='${url}'>${Title}</a>",
        columns=get_default_columns)
    sampletype = UIDReferenceField(
        title=_(
            u"label_sampletemplate_partition_sampletype",
            default=u"Sample Type"
        ),
        allowed_types=("SampleType", ),
        multi_valued=False,
        required=False)


class ISampleTemplateSchema(model.Schema):
    """Schema interface
    """

    # Fieldset "Partitions"
    model.fieldset(
        "partitions",
        label=_(u"fieldset_sampletemplate_partitions",
                default=u"Partitions"),
        fields=[
            "partitions",
            "auto_partition",
        ]
    )

    # Fieldset "Analyses"
    model.fieldset(
        "analyses",
        label=_(u"fieldset_sampletemplate_analyses",
                default=u"Analyses"),
        fields=[
            "services",
        ]
    )

    # Title
    title = schema.TextLine(
        title=_(u"title_sampletemplate_title",
                default=u"Name"),
        required=True)

    # Description
    description = schema.Text(
        title=_(u"title_sampletemplate_description",
                default=u"Description"),
        required=False)

    # Sample Point
    directives.widget(
        "samplepoint",
        UIDReferenceWidgetFactory,
        catalog=SETUP_CATALOG,
        query={
            "portal_type": "SamplePoint",
            "is_active": True,
            "sort_on": "sortable_title",
            "sort_order": "ascending",
        },
        display_template="<a href='${url}'>${Title}</a>",
        columns=get_default_columns)
    samplepoint = UIDReferenceField(
        title=_(u"label_sampletemplate_samplepoint",
                default=u"Sample Point"),
        description=_(u"description_sampletemplate_samplepoint",
                      default=u"Select the sample point for this template"),
        allowed_types=("SamplePoint", ),
        multi_valued=False,
        required=False)

    # Sample Type
    directives.widget(
        "sampletype",
        UIDReferenceWidgetFactory,
        catalog=SETUP_CATALOG,
        query={
            "portal_type": "SampleType",
            "is_active": True,
            "sort_on": "sortable_title",
            "sort_order": "ascending",
        },
        display_template="<a href='${url}'>${Title}</a>",
        columns=get_default_columns)
    sampletype = UIDReferenceField(
        title=_(u"label_sampletemplate_sampletype",
                default=u"Sample Type"),
        description=_(u"description_sampletemplate_sampletype",
                      default=u"Select the sample type for this template"),
        allowed_types=("SampleType", ),
        multi_valued=False,
        required=False)

    # Composite
    composite = schema.Bool(
        title=_(u"title_sampletemplate_composite",
                default=u"Composite"),
        description=_(u"description_sampletemplate_composite",
                      default=u"Select if the sample is a mix of sub samples"),
        default=False,
        required=False)

    # Sampling Required
    sampling_required = schema.Bool(
        title=_(u"title_sampletemplate_sampling_required",
                default=u"Sample collected by the laboratory"),
        description=_(u"description_sampletemplate_sampling_required",
                      default=u"Enable sampling workflow for the created "
                              u"samples"),
        default=False,
        required=False)

    # Partitions (Data Grid)
    directives.widget(
        "partitions",
        DataGridWidgetFactory,
        allow_insert=False,  # only auto append
        allow_delete=True,
        allow_reorder=True,
        auto_append=True)
    partitions = schema.List(
        title=_(u"label_sampletemplate_partitions",
                default=u"Partitions"),
        description=_(u"description_sampletemplate_partitions",
                      default=u"Each line defines a new partition "
                      u"identified by the 'Partition ID'"),
        value_type=DataGridRow(
            title=u"Partition Scheme",
            schema=IPartitionRecord),
        required=True,
        default=[])

    # Auto Partition
    auto_partition = schema.Bool(
        title=_(u"title_sampletemplate_auto_partition",
                default=u"Auto-partition on sample reception"),
        description=_(u"description_sampletemplate_auto_partition",
                      default=u"Automatically redirect the user to the "
                              u"partitions view when the sample is received"),
        default=False,
        required=False)

    # Services
    directives.widget("services",
                      ListingWidgetFactory,
                      listing_view="sampletemplate_services_widget")
    services = schema.List(
        title=_(
            u"title_sampletemplate_services",
            default=u"Services"
        ),
        description=_(
            u"description_sampletemplate_services",
            default=u"Select the services for this template"
        ),
        value_type=DataGridRow(schema=IServiceRecord),
        default=[],
        required=True,
    )


@implementer(ISampleTemplate, ISampleTemplateSchema, IDeactivable)
class SampleTemplate(Container, ClientAwareMixin):
    """SampleTemplate
    """
    # Catalogs where this type will be catalogued
    _catalogs = [SETUP_CATALOG]

    security = ClassSecurityInfo()

    @security.protected(permissions.View)
    def getRawSamplePoint(self):
        accessor = self.accessor("samplepoint", raw=True)
        return accessor(self)

    @security.protected(permissions.View)
    def getSamplePoint(self):
        samplepoint = self.getRawSamplePoint()
        if not samplepoint:
            return None
        return api.get_object(samplepoint)

    @security.protected(permissions.ModifyPortalContent)
    def setSamplePoint(self, value):
        mutator = self.mutator("samplepoint")
        mutator(self, value)

    @deprecate("deprecated since SENAITE 2.6: Use getRawSamplePoint() instead")
    @security.protected(permissions.View)
    def getSamplePointUID(self):
        return self.getRawSamplePoint()

    # BBB: AT schema field property
    SamplePoint = property(getSamplePoint, setSamplePoint)
    SamplePointUID = property(getRawSamplePoint)

    @security.protected(permissions.View)
    def getRawSampleType(self):
        accessor = self.accessor("sampletype", raw=True)
        return accessor(self)

    @security.protected(permissions.View)
    def getSampleType(self):
        sampletype = self.getRawSampleType()
        if not sampletype:
            return None
        return api.get_object(sampletype)

    @security.protected(permissions.ModifyPortalContent)
    def setSampleType(self, value):
        mutator = self.mutator("sampletype")
        mutator(self, value)

    # BBB: AT schema field property
    SampleType = property(getSampleType, setSampleType)

    @security.protected(permissions.View)
    def getComposite(self):
        accessor = self.accessor("composite")
        return bool(accessor(self))

    @security.protected(permissions.ModifyPortalContent)
    def setComposite(self, value):
        mutator = self.mutator("composite")
        mutator(self, bool(value))

    # BBB: AT schema field property
    Composite = property(getComposite, setComposite)

    @security.protected(permissions.View)
    def getSamplingRequired(self):
        accessor = self.accessor("sampling_required")
        return bool(accessor(self))

    @security.protected(permissions.ModifyPortalContent)
    def setSamplingRequired(self, value):
        mutator = self.mutator("sampling_required")
        mutator(self, bool(value))

    @security.protected(permissions.View)
    def getSamplingRequiredDefaultValue(self):
        """Get the setup if the sampling workflow is enabled or not
        """
        bikasetup = api.get_bika_setup()
        return bikasetup.getSamplingWorkflowEnabled()

    # BBB: AT schema field property
    SamplingRequired = property(getSamplingRequired, setSamplingRequired)

    @security.protected(permissions.View)
    def getPartitions(self):
        accessor = self.accessor("partitions")
        return accessor(self) or []

    @security.protected(permissions.ModifyPortalContent)
    def setPartitions(self, value):
        """Set partitions for the template
        """
        if not isinstance(value, (list, dict)):
            raise TypeError(
                "Expected a dict or list, got %r" % type(value))
        if isinstance(value, dict):
            value = [value]
        records = []
        for v in value:
            part_id = v.get("part_id", "")
            container = v.get("container", "")
            preservation = v.get("preservation", "")
            sampletype = v.get("sampletype", "")

            # ensure UIDs for reference fields
            if container:
                container = api.get_uid(container)
            if preservation:
                preservation = api.get_uid(preservation)
            if sampletype:
                sampletype = api.get_uid(sampletype)

            records.append({
                "part_id": part_id,
                "container": container,
                "preservation": preservation,
                "sampletype": sampletype,
            })
        mutator = self.mutator("partitions")
        mutator(self, records)

    # BBB: AT schema field property
    Partitions = property(getPartitions, setPartitions)

    @security.protected(permissions.View)
    def getAutoPartition(self):
        accessor = self.accessor("auto_partition")
        return bool(accessor(self))

    @security.protected(permissions.ModifyPortalContent)
    def setAutoPartition(self, value):
        mutator = self.mutator("auto_partition")
        mutator(self, bool(value))

    # BBB: AT schema field property
    AutoPartition = property(getAutoPartition, setAutoPartition)

    @security.protected(permissions.View)
    def getRawServices(self):
        """Return the raw value of the services field

        >>> self.getRawServices()
        [{'uid': '...', 'part_id': 'part-1', 'hidden': False}, ...]

        :returns: List of dicts including `uid`, `hidden` and `part_id`
        """
        accessor = self.accessor("services")
        return accessor(self) or []

    @security.protected(permissions.View)
    def getServices(self):
        """Returns a list of service objects

        >>> self.getServices()
        [<AnalysisService at ...>,  <AnalysisService at ...>, ...]

        :returns: List of analysis service objects
        """
        records = self.getRawServices()
        service_uids = map(lambda r: r.get("uid"), records)
        return list(map(api.get_object, service_uids))

    @security.protected(permissions.ModifyPortalContent)
    def setServices(self, value):
        """Set services for the template

        This method accepts either a list of analysis service objects, a list
        of analysis service UIDs or a list of analysis profile service records
        containing the keys `uid`, `hidden` and `part_id`:

        >>> self.setServices([<AnalysisService at ...>, ...])
        >>> self.setServices(['353e1d9bd45d45dbabc837114a9c41e6', '...', ...])
        >>> self.setServices([{'hidden': False, 'uid': '...'}, ...])

        Raises a TypeError if the value does not match any allowed type.
        """
        if not isinstance(value, list):
            value = [value]

        records = []
        for v in value:
            uid = ""
            hidden = False
            part_id = ""
            if isinstance(v, dict):
                uid = api.get_uid(v.get("uid"))
                hidden = v.get("hidden",
                               api.get_object(uid).getHidden())
                part_id = v.get("part_id", "")
            elif api.is_object(v):
                uid = api.get_uid(v)
                hidden = v.getHidden()
            elif api.is_uid(v):
                obj = api.get_object(v)
                uid = v
                hidden = obj.getHidden()
            else:
                raise TypeError(
                    "Expected object, uid or record, got %r" % type(v))
            records.append({
                "uid": uid,
                "hidden": hidden,
                "part_id": part_id,
            })

        mutator = self.mutator("services")
        mutator(self, records)

    # BBB: AT schema field property
    Services = property(getServices, setServices)

    @deprecate("deprecated since SENAITE 2.6: Use getRawServices() instead")
    @security.protected(permissions.View)
    def getAnalysisServicesSettings(self):
        """BBB: Return the settings for all assigned services

        :returns: List of dicts including `uid`, `hidden` and `part_id`
        """
        # Note: We store the selected service UIDs, hidden and part_id
        # settings in the `services` field. Therefore, we can just return the
        # raw value.
        return self.getRawServices()

    @security.protected(permissions.ModifyPortalContent)
    def setAnalysisServicesSettings(self, settings):
        """BBB: Update settings for all assigned service UIDs

        This method expects a list of dictionaries containing the service
        `uid`, `part_id` and the `hidden` setting.

        This is basically the same format as stored in the `services` field!

        However, we want to just update the settings for selected service UIDs"

        >>> settings =  [{'uid': '...', 'hidden': False, 'part_id': 'part-1'}]
        >>> setAnalysisServicesSettings(settings)
        """
        if not isinstance(settings, list):
            settings = [settings]

        by_uid = self.get_services_by_uid()

        for setting in settings:
            if not isinstance(setting, dict):
                raise TypeError(
                    "Expected a record containing `uid`, `hidden` and"
                    "`partition`, got %s" % type(setting))
            uid = api.get_uid(setting.get("uid"))
            hidden = setting.get("hidden", api.get_object(uid).getHidden())
            part_id = setting.get("part_id", "")

            if not uid:
                raise ValueError("UID is missing in setting %r" % setting)

            record = by_uid.get(api.get_uid(uid))
            if not record:
                continue
            record["hidden"] = hidden
            record["part_id"] = part_id

        # set back the new services
        self.setServices(by_uid.values())

    @security.protected(permissions.View)
    def getAnalysisServiceSettings(self, service):
        """Returns the settings for a single service
        """
        uid = api.get_uid(service)
        by_uid = self.get_services_by_uid()
        record = by_uid.get(uid, {
            "uid": uid,
            "part_id": "",
            "hidden": False,
        })
        return record

    @security.protected(permissions.View)
    def isAnalysisServiceHidden(self, service):
        """Check if the service is configured as hidden
        """
        uid = api.get_uid(service)
        services = self.get_services_by_uid()
        record = services.get(uid)
        if not record:
            obj = api.get_object(service)
            return obj.getRawHidden()
        return record.get("hidden", False)

    @security.protected(permissions.View)
    def getAnalysisServicePartitionID(self, service):
        """Get the assigned parition for the service
        """
        uid = api.get_uid(service)
        services = self.get_services_by_uid()
        record = services.get(uid)
        if not record:
            return ""
        return record.get("part_id", "")

    @security.protected(permissions.View)
    def getAnalysisServiceUIDs(self):
        """Returns a list of all assigned service UIDs
        """
        services = self.getRawServices()
        return list(map(lambda record: record.get("uid"), services))

    @security.protected(permissions.View)
    def get_services_by_uid(self):
        """Return the selected services grouped by UID
        """
        records = {}
        for record in self.services:
            records[record.get("uid")] = record
        return records

    def remove_service(self, service):

        """Remove the service from the template

        If the service is not selected in the profile, returns False.

        NOTE: This method is used when an Analysis Service was deactivated.

        :param service: The service to be removed from this template
        :type service: AnalysisService
        :return: True if the AnalysisService has been removed successfully
        """
        # get the UID of the service that should be removed
        uid = api.get_uid(service)
        # get the current raw value of the services field.
        current_services = self.getRawServices()
        # filter out the UID of the service
        new_services = filter(
            lambda record: record.get("uid") != uid, current_services)

        # check if the service was removed or not
        current_services_count = len(current_services)
        new_services_count = len(new_services)

        if current_services_count == new_services_count:
            # service was not part of the profile
            return False

        # set the new services
        self.setServices(new_services)

        return True


1		# -- coding: utf-8 --
2		#
3		# This file is part of SENAITE.CORE.
4		#
5		# SENAITE.CORE is free software: you can redistribute it and/or modify it under
6		# the terms of the GNU General Public License as published by the Free Software
7		# Foundation, version 2.
8		#
9		# This program is distributed in the hope that it will be useful, but WITHOUT
10		# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
11		# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
12		# details.
13		#
14		# You should have received a copy of the GNU General Public License along with
15		# this program; if not, write to the Free Software Foundation, Inc., 51
16		# Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
17		#
18		# Copyright 2018-2024 by it's authors.
19		# Some rights reserved, see README and LICENSE.
20
21		from AccessControl import ClassSecurityInfo
22		from bika.lims import api
23		from bika.lims import senaiteMessageFactory as _
24		from bika.lims.interfaces import IDeactivable
25		from plone.autoform import directives
26		from plone.supermodel import model
27		from Products.CMFCore import permissions
28		from senaite.core.catalog import SETUP_CATALOG
29		from senaite.core.config.widgets import get_default_columns
30		from senaite.core.content.base import Container
31		from senaite.core.content.mixins import ClientAwareMixin
32		from senaite.core.interfaces import ISampleTemplate
33		from senaite.core.schema import UIDReferenceField
34		from senaite.core.schema.fields import DataGridRow
35		from senaite.core.z3cform.widgets.datagrid import DataGridWidgetFactory
36		from senaite.core.z3cform.widgets.listing.widget import ListingWidgetFactory
37		from senaite.core.z3cform.widgets.uidreference import UIDReferenceWidgetFactory
38		from zope import schema
39		from zope.deprecation import deprecate
40		from zope.interface import Interface
41		from zope.interface import implementer
42
43
44		class IServiceRecord(Interface):
45		"""Record schema for selected services and partitions
46		"""
47		uid = schema.TextLine(title=u"Service UID")
48		hidden = schema.Bool(title=u"Hidden")
49		part_id = schema.TextLine(title=u"Partition ID")
50
51
52		class IPartitionRecord(Interface):
53		"""DataGrid Row for Sample Partition Schema
54		"""
55
56		# PARTITION
57		directives.widget("part_id",
58		style=u"width:100px!important")
59		part_id = schema.TextLine(
60		title=_(
61		u"label_sampletemplate_partition_part_id",
62		default=u"Partition ID"
63		),
64		required=False,
65		default=u"part-1")
66
67		# CONTAINER
68		directives.widget(
69		"container",
70		UIDReferenceWidgetFactory,
71		catalog=SETUP_CATALOG,
72		query={
73		"portal_type": "SampleContainer",
74		"is_active": True,
75		"sort_on": "sortable_title",
76		"sort_order": "ascending",
77		},
78		display_template="<a href='${url}'>${Title}</a>",
79		columns=get_default_columns)
80		container = UIDReferenceField(
81		title=_(
82		u"label_sampletemplate_partition_container",
83		default=u"Container"
84		),
85		allowed_types=("SampleContainer", ),
86		multi_valued=False,
87		required=False)
88
89		# PRESERVATION
90		directives.widget(
91		"preservation",
92		UIDReferenceWidgetFactory,
93		catalog=SETUP_CATALOG,
94		query={
95		"portal_type": "SamplePreservation",
96		"is_active": True,
97		"sort_on": "sortable_title",
98		"sort_order": "ascending",
99		},
100		display_template="<a href='${url}'>${Title}</a>",
101		columns=get_default_columns)
102		preservation = UIDReferenceField(
103		title=_(
104		u"label_sampletemplate_partition_preservation",
105		default=u"Preservation"
106		),
107		allowed_types=("SamplePreservation", ),
108		multi_valued=False,
109		required=False)
110
111		# SAMPLE TYPE
112		directives.widget(
113		"sampletype",
114		UIDReferenceWidgetFactory,
115		catalog=SETUP_CATALOG,
116		query={
117		"portal_type": "SampleType",
118		"is_active": True,
119		"sort_on": "sortable_title",
120		"sort_order": "ascending",
121		},
122		display_template="<a href='${url}'>${Title}</a>",
123		columns=get_default_columns)
124		sampletype = UIDReferenceField(
125		title=_(
126		u"label_sampletemplate_partition_sampletype",
127		default=u"Sample Type"
128		),
129		allowed_types=("SampleType", ),
130		multi_valued=False,
131		required=False)
132
133
134		class ISampleTemplateSchema(model.Schema):
135		"""Schema interface
136		"""
137
138		# Fieldset "Partitions"
139		model.fieldset(
140		"partitions",
141		label=_(u"fieldset_sampletemplate_partitions",
142		default=u"Partitions"),
143		fields=[
144		"partitions",
145		"auto_partition",
146		]
147		)
148
149		# Fieldset "Analyses"
150		model.fieldset(
151		"analyses",
152		label=_(u"fieldset_sampletemplate_analyses",
153		default=u"Analyses"),
154		fields=[
155		"services",
156		]
157		)
158
159		# Title
160		title = schema.TextLine(
161		title=_(u"title_sampletemplate_title",
162		default=u"Name"),
163		required=True)
164
165		# Description
166		description = schema.Text(
167		title=_(u"title_sampletemplate_description",
168		default=u"Description"),
169		required=False)
170
171		# Sample Point
172		directives.widget(
173		"samplepoint",
174		UIDReferenceWidgetFactory,
175		catalog=SETUP_CATALOG,
176		query={
177		"portal_type": "SamplePoint",
178		"is_active": True,
179		"sort_on": "sortable_title",
180		"sort_order": "ascending",
181		},
182		display_template="<a href='${url}'>${Title}</a>",
183		columns=get_default_columns)
184		samplepoint = UIDReferenceField(
185		title=_(u"label_sampletemplate_samplepoint",
186		default=u"Sample Point"),
187		description=_(u"description_sampletemplate_samplepoint",
188		default=u"Select the sample point for this template"),
189		allowed_types=("SamplePoint", ),
190		multi_valued=False,
191		required=False)
192
193		# Sample Type
194		directives.widget(
195		"sampletype",
196		UIDReferenceWidgetFactory,
197		catalog=SETUP_CATALOG,
198		query={
199		"portal_type": "SampleType",
200		"is_active": True,
201		"sort_on": "sortable_title",
202		"sort_order": "ascending",
203		},
204		display_template="<a href='${url}'>${Title}</a>",
205		columns=get_default_columns)
206		sampletype = UIDReferenceField(
207		title=_(u"label_sampletemplate_sampletype",
208		default=u"Sample Type"),
209		description=_(u"description_sampletemplate_sampletype",
210		default=u"Select the sample type for this template"),
211		allowed_types=("SampleType", ),
212		multi_valued=False,
213		required=False)
214
215		# Composite
216		composite = schema.Bool(
217		title=_(u"title_sampletemplate_composite",
218		default=u"Composite"),
219		description=_(u"description_sampletemplate_composite",
220		default=u"Select if the sample is a mix of sub samples"),
221		default=False,
222		required=False)
223
224		# Sampling Required
225		sampling_required = schema.Bool(
226		title=_(u"title_sampletemplate_sampling_required",
227		default=u"Sample collected by the laboratory"),
228		description=_(u"description_sampletemplate_sampling_required",
229		default=u"Enable sampling workflow for the created "
230		u"samples"),
231		default=False,
232		required=False)
233
234		# Partitions (Data Grid)
235		directives.widget(
236		"partitions",
237		DataGridWidgetFactory,
238		allow_insert=False, # only auto append
239		allow_delete=True,
240		allow_reorder=True,
241		auto_append=True)
242		partitions = schema.List(
243		title=_(u"label_sampletemplate_partitions",
244		default=u"Partitions"),
245		description=_(u"description_sampletemplate_partitions",
246		default=u"Each line defines a new partition "
247		u"identified by the 'Partition ID'"),
248		value_type=DataGridRow(
249		title=u"Partition Scheme",
250		schema=IPartitionRecord),
251		required=True,
252		default=[])
253
254		# Auto Partition
255		auto_partition = schema.Bool(
256		title=_(u"title_sampletemplate_auto_partition",
257		default=u"Auto-partition on sample reception"),
258		description=_(u"description_sampletemplate_auto_partition",
259		default=u"Automatically redirect the user to the "
260		u"partitions view when the sample is received"),
261		default=False,
262		required=False)
263
264		# Services
265		directives.widget("services",
266		ListingWidgetFactory,
267		listing_view="sampletemplate_services_widget")
268		services = schema.List(
269		title=_(
270		u"title_sampletemplate_services",
271		default=u"Services"
272		),
273		description=_(
274		u"description_sampletemplate_services",
275		default=u"Select the services for this template"
276		),
277		value_type=DataGridRow(schema=IServiceRecord),
278		default=[],
279		required=True,
280		)
281
282
283		@implementer(ISampleTemplate, ISampleTemplateSchema, IDeactivable)
284		class SampleTemplate(Container, ClientAwareMixin):
285		"""SampleTemplate
286		"""
287		# Catalogs where this type will be catalogued
288		_catalogs = [SETUP_CATALOG]
289
290		security = ClassSecurityInfo()
291
292		@security.protected(permissions.View)
293		def getRawSamplePoint(self):
294		accessor = self.accessor("samplepoint", raw=True)
295		return accessor(self)
296
297		@security.protected(permissions.View)
298		def getSamplePoint(self):
299		samplepoint = self.getRawSamplePoint()
300		if not samplepoint:
301		return None
302		return api.get_object(samplepoint)
303
304		@security.protected(permissions.ModifyPortalContent)
305		def setSamplePoint(self, value):
306		mutator = self.mutator("samplepoint")
307		mutator(self, value)
308
309		@deprecate("deprecated since SENAITE 2.6: Use getRawSamplePoint() instead")
310		@security.protected(permissions.View)
311		def getSamplePointUID(self):
312		return self.getRawSamplePoint()
313
314		# BBB: AT schema field property
315		SamplePoint = property(getSamplePoint, setSamplePoint)
316		SamplePointUID = property(getRawSamplePoint)
317
318		@security.protected(permissions.View)
319		def getRawSampleType(self):
320		accessor = self.accessor("sampletype", raw=True)
321		return accessor(self)
322
323		@security.protected(permissions.View)
324		def getSampleType(self):
325		sampletype = self.getRawSampleType()
326		if not sampletype:
327		return None
328		return api.get_object(sampletype)
329
330		@security.protected(permissions.ModifyPortalContent)
331		def setSampleType(self, value):
332		mutator = self.mutator("sampletype")
333		mutator(self, value)
334
335		# BBB: AT schema field property
336		SampleType = property(getSampleType, setSampleType)
337
338		@security.protected(permissions.View)
339		def getComposite(self):
340		accessor = self.accessor("composite")
341		return bool(accessor(self))
342
343		@security.protected(permissions.ModifyPortalContent)
344		def setComposite(self, value):
345		mutator = self.mutator("composite")
346		mutator(self, bool(value))
347
348		# BBB: AT schema field property
349		Composite = property(getComposite, setComposite)
350
351		@security.protected(permissions.View)
352		def getSamplingRequired(self):
353		accessor = self.accessor("sampling_required")
354		return bool(accessor(self))
355
356		@security.protected(permissions.ModifyPortalContent)
357		def setSamplingRequired(self, value):
358		mutator = self.mutator("sampling_required")
359		mutator(self, bool(value))
360
361		@security.protected(permissions.View)
362		def getSamplingRequiredDefaultValue(self):
363		"""Get the setup if the sampling workflow is enabled or not
364		"""
365		bikasetup = api.get_bika_setup()
366		return bikasetup.getSamplingWorkflowEnabled()
367
368		# BBB: AT schema field property
369		SamplingRequired = property(getSamplingRequired, setSamplingRequired)
370
371		@security.protected(permissions.View)
372		def getPartitions(self):
373		accessor = self.accessor("partitions")
374		return accessor(self) or []
375
376		@security.protected(permissions.ModifyPortalContent)
377		def setPartitions(self, value):
378		"""Set partitions for the template
379		"""
380		if not isinstance(value, (list, dict)):
381		raise TypeError(
382		"Expected a dict or list, got %r" % type(value))
383		if isinstance(value, dict):
384		value = [value]
385		records = []
386		for v in value:
387		part_id = v.get("part_id", "")
388		container = v.get("container", "")
389		preservation = v.get("preservation", "")
390		sampletype = v.get("sampletype", "")
391
392		# ensure UIDs for reference fields
393		if container:
394		container = api.get_uid(container)
395		if preservation:
396		preservation = api.get_uid(preservation)
397		if sampletype:
398		sampletype = api.get_uid(sampletype)
399
400		records.append({
401		"part_id": part_id,
402		"container": container,
403		"preservation": preservation,
404		"sampletype": sampletype,
405		})
406		mutator = self.mutator("partitions")
407		mutator(self, records)
408
409		# BBB: AT schema field property
410		Partitions = property(getPartitions, setPartitions)
411
412		@security.protected(permissions.View)
413		def getAutoPartition(self):
414		accessor = self.accessor("auto_partition")
415		return bool(accessor(self))
416
417		@security.protected(permissions.ModifyPortalContent)
418		def setAutoPartition(self, value):
419		mutator = self.mutator("auto_partition")
420		mutator(self, bool(value))
421
422		# BBB: AT schema field property
423		AutoPartition = property(getAutoPartition, setAutoPartition)
424
425		@security.protected(permissions.View)
426		def getRawServices(self):
427		"""Return the raw value of the services field
428
429		>>> self.getRawServices()
430		[{'uid': '...', 'part_id': 'part-1', 'hidden': False}, ...]
431
432		:returns: List of dicts including `uid`, `hidden` and `part_id`
433		"""
434		accessor = self.accessor("services")
435		return accessor(self) or []
436
437		@security.protected(permissions.View)
438		def getServices(self):
439		"""Returns a list of service objects
440
441		>>> self.getServices()
442		[<AnalysisService at ...>, <AnalysisService at ...>, ...]
443
444		:returns: List of analysis service objects
445		"""
446		records = self.getRawServices()
447		service_uids = map(lambda r: r.get("uid"), records)
448		return list(map(api.get_object, service_uids))
449
450		@security.protected(permissions.ModifyPortalContent)
451		def setServices(self, value):
452		"""Set services for the template
453
454		This method accepts either a list of analysis service objects, a list
455		of analysis service UIDs or a list of analysis profile service records
456		containing the keys `uid`, `hidden` and `part_id`:
457
458		>>> self.setServices([<AnalysisService at ...>, ...])
459		>>> self.setServices(['353e1d9bd45d45dbabc837114a9c41e6', '...', ...])
460		>>> self.setServices([{'hidden': False, 'uid': '...'}, ...])
461
462		Raises a TypeError if the value does not match any allowed type.
463		"""
464		if not isinstance(value, list):
465		value = [value]
466
467		records = []
468		for v in value:
469		uid = ""
470		hidden = False
471		part_id = ""
472		if isinstance(v, dict):
473		uid = api.get_uid(v.get("uid"))
474		hidden = v.get("hidden",
475		api.get_object(uid).getHidden())
476		part_id = v.get("part_id", "")
477		elif api.is_object(v):
478		uid = api.get_uid(v)
479		hidden = v.getHidden()
480		elif api.is_uid(v):
481		obj = api.get_object(v)
482		uid = v
483		hidden = obj.getHidden()
484		else:
485		raise TypeError(
486		"Expected object, uid or record, got %r" % type(v))
487		records.append({
488		"uid": uid,
489		"hidden": hidden,
490		"part_id": part_id,
491		})
492
493		mutator = self.mutator("services")
494		mutator(self, records)
495
496		# BBB: AT schema field property
497		Services = property(getServices, setServices)
498
499		@deprecate("deprecated since SENAITE 2.6: Use getRawServices() instead")
500		@security.protected(permissions.View)
501		def getAnalysisServicesSettings(self):
502		"""BBB: Return the settings for all assigned services
503
504		:returns: List of dicts including `uid`, `hidden` and `part_id`
505		"""
506		# Note: We store the selected service UIDs, hidden and part_id
507		# settings in the `services` field. Therefore, we can just return the
508		# raw value.
509		return self.getRawServices()
510
511		@security.protected(permissions.ModifyPortalContent)
512		def setAnalysisServicesSettings(self, settings):
513		"""BBB: Update settings for all assigned service UIDs
514
515		This method expects a list of dictionaries containing the service
516		`uid`, `part_id` and the `hidden` setting.
517
518		This is basically the same format as stored in the `services` field!
519
520		However, we want to just update the settings for selected service UIDs"
521
522		>>> settings = [{'uid': '...', 'hidden': False, 'part_id': 'part-1'}]
523		>>> setAnalysisServicesSettings(settings)
524		"""
525		if not isinstance(settings, list):
526		settings = [settings]
527
528		by_uid = self.get_services_by_uid()
529
530		for setting in settings:
531		if not isinstance(setting, dict):
532		raise TypeError(
533		"Expected a record containing `uid`, `hidden` and"
534		"`partition`, got %s" % type(setting))
535		uid = api.get_uid(setting.get("uid"))
536		hidden = setting.get("hidden", api.get_object(uid).getHidden())
537		part_id = setting.get("part_id", "")
538
539		if not uid:
540		raise ValueError("UID is missing in setting %r" % setting)
541
542		record = by_uid.get(api.get_uid(uid))
543		if not record:
544		continue
545		record["hidden"] = hidden
546		record["part_id"] = part_id
547
548		# set back the new services
549		self.setServices(by_uid.values())
550
551		@security.protected(permissions.View)
552		def getAnalysisServiceSettings(self, service):
553		"""Returns the settings for a single service
554		"""
555		uid = api.get_uid(service)
556		by_uid = self.get_services_by_uid()
557		record = by_uid.get(uid, {
558		"uid": uid,
559		"part_id": "",
560		"hidden": False,
561		})
562		return record
563
564		@security.protected(permissions.View)
565		def isAnalysisServiceHidden(self, service):
566		"""Check if the service is configured as hidden
567		"""
568		uid = api.get_uid(service)
569		services = self.get_services_by_uid()
570		record = services.get(uid)
571		if not record:
572		obj = api.get_object(service)
573		return obj.getRawHidden()
574		return record.get("hidden", False)
575
576		@security.protected(permissions.View)
577		def getAnalysisServicePartitionID(self, service):
578		"""Get the assigned parition for the service
579		"""
580		uid = api.get_uid(service)
581		services = self.get_services_by_uid()
582		record = services.get(uid)
583		if not record:
584		return ""
585		return record.get("part_id", "")
586
587		@security.protected(permissions.View)
588		def getAnalysisServiceUIDs(self):
589		"""Returns a list of all assigned service UIDs
590		"""
591		services = self.getRawServices()
592		return list(map(lambda record: record.get("uid"), services))
593
594		@security.protected(permissions.View)
595		def get_services_by_uid(self):
596		"""Return the selected services grouped by UID
597		"""
598		records = {}
599		for record in self.services:
600		records[record.get("uid")] = record
601		return records
602
603	View Code Duplication	def remove_service(self, service):
		0 ignored issues – show Duplication introduced 2024-04-18 13:45 UTC by Report Bug Copy Issue Report This code seems to be duplicated in your project. Loading history...
604		"""Remove the service from the template
605
606		If the service is not selected in the profile, returns False.
607
608		NOTE: This method is used when an Analysis Service was deactivated.
609
610		:param service: The service to be removed from this template
611		:type service: AnalysisService
612		:return: True if the AnalysisService has been removed successfully
613		"""
614		# get the UID of the service that should be removed
615		uid = api.get_uid(service)
616		# get the current raw value of the services field.
617		current_services = self.getRawServices()
618		# filter out the UID of the service
619		new_services = filter(
620		lambda record: record.get("uid") != uid, current_services)
621
622		# check if the service was removed or not
623		current_services_count = len(current_services)
624		new_services_count = len(new_services)
625
626		if current_services_count == new_services_count:
627		# service was not part of the profile
628		return False
629
630		# set the new services
631		self.setServices(new_services)
632
633		return True
634

senaite / senaite.core

Push — 2.x ( 0ba30f...7ab1ba )

SampleTemplate.setAutoPartition() A

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