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# -*- coding: utf-8 -*- |
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# |
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# This file is part of SENAITE.CORE |
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# |
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# Copyright 2018 by it's authors. |
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# Some rights reserved. See LICENSE.rst, CONTRIBUTORS.rst. |
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from AccessControl import ClassSecurityInfo |
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from Products.ATExtensions.ateapi import RecordsField |
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from Products.Archetypes.Field import TextField |
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from Products.Archetypes.Widget import RichWidget |
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from Products.Archetypes.atapi import BooleanField |
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from Products.Archetypes.atapi import BooleanWidget |
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from Products.Archetypes.atapi import DecimalWidget |
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from Products.Archetypes.atapi import FixedPointField |
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from Products.Archetypes.atapi import IntegerField |
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from Products.Archetypes.atapi import IntegerWidget |
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from Products.Archetypes.atapi import LinesField |
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from Products.Archetypes.atapi import MultiSelectionWidget |
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from Products.Archetypes.atapi import ReferenceField |
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from Products.Archetypes.atapi import Schema |
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from Products.Archetypes.atapi import SelectionWidget |
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from Products.Archetypes.atapi import StringField |
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from Products.Archetypes.atapi import TextAreaWidget |
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from Products.Archetypes.atapi import registerType |
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from Products.Archetypes.utils import DisplayList |
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from Products.Archetypes.utils import IntDisplayList |
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from Products.CMFCore.utils import getToolByName |
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from archetypes.referencebrowserwidget import ReferenceBrowserWidget |
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from bika.lims import bikaMessageFactory as _ |
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from bika.lims.browser.fields import DurationField |
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from bika.lims.browser.widgets import DurationWidget |
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from bika.lims.browser.widgets import RecordsWidget |
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from bika.lims.browser.widgets import RejectionSetupWidget |
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from bika.lims.config import ARIMPORT_OPTIONS |
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from bika.lims.config import ATTACHMENT_OPTIONS |
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from bika.lims.config import CURRENCIES |
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from bika.lims.config import DECIMAL_MARKS |
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from bika.lims.config import MULTI_VERIFICATION_TYPE |
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from bika.lims.config import PROJECTNAME |
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from bika.lims.config import SCINOTATION_OPTIONS |
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from bika.lims.config import WORKSHEET_LAYOUT_OPTIONS |
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from bika.lims.content.bikaschema import BikaFolderSchema |
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from bika.lims.interfaces import IBikaSetup |
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from bika.lims.interfaces import IHaveNoBreadCrumbs |
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from bika.lims.locales import COUNTRIES |
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from bika.lims.numbergenerator import INumberGenerator |
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from bika.lims.vocabularies import getStickerTemplates as _getStickerTemplates |
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from plone.app.folder import folder |
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from zope.component import getUtility |
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from zope.interface import implements |
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class IDFormattingField(RecordsField): |
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"""A list of prefixes per portal_type |
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""" |
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_properties = RecordsField._properties.copy() |
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_properties.update({ |
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'type': 'prefixes', |
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'subfields': ( |
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'portal_type', |
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'form', |
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'sequence_type', |
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'context', |
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'counter_type', |
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'counter_reference', |
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'prefix', |
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'split_length' |
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), |
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'subfield_labels': { |
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'portal_type': 'Portal Type', |
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'form': 'Format', |
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'sequence_type': 'Seq Type', |
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'context': 'Context', |
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'counter_type': 'Counter Type', |
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'counter_reference': 'Counter Ref', |
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'prefix': 'Prefix', |
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'split_length': 'Split Length', |
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}, |
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'subfield_readonly': { |
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'portal_type': False, |
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'form': False, |
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'sequence_type': False, |
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'context': False, |
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'counter_type': False, |
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'counter_reference': False, |
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'prefix': False, |
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'split_length': False, |
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}, |
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'subfield_sizes': { |
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'portal_type': 20, |
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'form': 30, |
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'sequence_type': 1, |
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'context': 12, |
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'counter_type': 1, |
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'counter_reference': 12, |
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'prefix': 12, |
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'split_length': 5, |
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}, |
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'subfield_types': { |
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'sequence_type': 'selection', |
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'counter_type': 'selection', |
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'split_length': 'int', |
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}, |
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'subfield_vocabularies': { |
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'sequence_type': 'getSequenceTypes', |
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'counter_type': 'getCounterTypes', |
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}, |
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'subfield_maxlength': { |
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'form': 256, |
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}, |
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}) |
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security = ClassSecurityInfo() |
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def getSequenceTypes(self, instance=None): |
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return DisplayList([ |
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('', ''), |
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('counter', 'Counter'), |
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('generated', 'Generated') |
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]) |
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def getCounterTypes(self, instance=None): |
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return DisplayList([ |
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('', ''), |
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('backreference', 'Backreference'), |
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('contained', 'Contained') |
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]) |
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STICKER_AUTO_OPTIONS = DisplayList(( |
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('None', _('None')), |
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('register', _('Register')), |
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('receive', _('Receive')), |
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)) |
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schema = BikaFolderSchema.copy() + Schema(( |
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IntegerField( |
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'PasswordLifetime', |
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schemata="Security", |
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required=1, |
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default=0, |
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widget=IntegerWidget( |
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label=_("Password lifetime"), |
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description=_("The number of days before a password expires. 0 disables password expiry"), |
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) |
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), |
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IntegerField( |
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'AutoLogOff', |
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schemata="Security", |
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required=1, |
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default=0, |
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widget=IntegerWidget( |
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label=_("Automatic log-off"), |
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description=_( |
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"The number of minutes before a user is automatically logged off. " |
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"0 disables automatic log-off"), |
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) |
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), |
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BooleanField( |
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'RestrictWorksheetUsersAccess', |
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schemata="Security", |
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default=True, |
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widget=BooleanWidget( |
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label=_("Allow access to worksheets only to assigned analysts"), |
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description=_("If unchecked, analysts will have access to all worksheets.") |
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) |
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), |
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BooleanField( |
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'AllowToSubmitNotAssigned', |
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schemata="Security", |
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default=True, |
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widget=BooleanWidget( |
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label=_("Allow to submit results for unassigned analyses or for " |
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"analyses assigned to others"), |
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description=_( |
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"If unchecked, users will only be able to submit results " |
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"for the analyses they are assigned to, and the submission of " |
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"results for unassigned analyses won't be permitted. This " |
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"setting does not apply to users with role Lab Manager") |
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) |
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), |
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BooleanField( |
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'RestrictWorksheetManagement', |
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schemata="Security", |
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default=True, |
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widget=BooleanWidget( |
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label=_("Only lab managers can create and manage worksheets"), |
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description=_("If unchecked, analysts and lab clerks will " |
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"be able to manage Worksheets, too. If the " |
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"users have restricted access only to those " |
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"worksheets for which they are assigned, " |
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"this option will be checked and readonly.") |
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) |
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), |
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BooleanField( |
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'ShowPrices', |
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schemata="Accounting", |
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default=True, |
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widget=BooleanWidget( |
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label=_("Include and display pricing information"), |
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) |
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), |
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StringField( |
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'Currency', |
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schemata="Accounting", |
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required=1, |
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vocabulary=CURRENCIES, |
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default='ZAR', |
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widget=SelectionWidget( |
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label=_("Currency"), |
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description=_("Select the currency the site will use to display prices."), |
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format='select', |
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) |
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), |
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StringField( |
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'DefaultCountry', |
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schemata="Accounting", |
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required=1, |
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vocabulary='getCountries', |
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default='', |
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widget=SelectionWidget( |
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label=_("Country"), |
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description=_("Select the country the site will show by default"), |
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format='select', |
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) |
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), |
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FixedPointField( |
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'MemberDiscount', |
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schemata="Accounting", |
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default='33.33', |
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widget=DecimalWidget( |
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label=_("Member discount %"), |
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description=_( |
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"The discount percentage entered here, is applied to the prices for clients " |
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"flagged as 'members', normally co-operative members or associates deserving " |
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"of this discount"), |
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) |
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), |
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FixedPointField( |
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'VAT', |
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schemata="Accounting", |
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default='14.00', |
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widget=DecimalWidget( |
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label=_("VAT %"), |
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description=_( |
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"Enter percentage value eg. 14.0. This percentage is applied system wide " |
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"but can be overwrittem on individual items"), |
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) |
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), |
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StringField( |
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'DecimalMark', |
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schemata="Results Reports", |
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vocabulary=DECIMAL_MARKS, |
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default=".", |
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widget=SelectionWidget( |
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label=_("Default decimal mark"), |
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description=_("Preferred decimal mark for reports."), |
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format='select', |
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) |
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), |
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StringField( |
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'ScientificNotationReport', |
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schemata="Results Reports", |
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default='1', |
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vocabulary=SCINOTATION_OPTIONS, |
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widget=SelectionWidget( |
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label=_("Default scientific notation format for reports"), |
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description=_("Preferred scientific notation format for reports"), |
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format='select', |
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) |
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), |
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IntegerField( |
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'MinimumResults', |
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schemata="Results Reports", |
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required=1, |
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default=5, |
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widget=IntegerWidget( |
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label=_("Minimum number of results for QC stats calculations"), |
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description=_( |
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"Using too few data points does not make statistical sense. " |
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"Set an acceptable minimum number of results before QC statistics " |
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"will be calculated and plotted"), |
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) |
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), |
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BooleanField( |
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'CategoriseAnalysisServices', |
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schemata="Analyses", |
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default=False, |
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widget=BooleanWidget( |
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label=_("Categorise analysis services"), |
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description=_("Group analysis services by category in the LIMS tables, helpful when the list is long") |
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), |
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), |
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BooleanField( |
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'EnableARSpecs', |
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schemata="Analyses", |
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default=False, |
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widget=BooleanWidget( |
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label=_("Enable Sample Specifications"), |
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description=_( |
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"Analysis specifications which are edited directly on the " |
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"Sample."), |
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), |
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), |
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IntegerField( |
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'ExponentialFormatThreshold', |
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schemata="Analyses", |
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required=1, |
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default=7, |
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widget=IntegerWidget( |
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label=_("Exponential format threshold"), |
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description=_( |
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"Result values with at least this number of significant " |
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"digits are displayed in scientific notation using the " |
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"letter 'e' to indicate the exponent. The precision can be " |
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"configured in individual Analysis Services."), |
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) |
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), |
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BooleanField( |
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'EnableAnalysisRemarks', |
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schemata="Analyses", |
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default=False, |
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widget=BooleanWidget( |
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label=_("Add a remarks field to all analyses"), |
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description=_( |
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"If enabled, a free text field will be displayed close to " |
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"each analysis in results entry view" |
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331
|
|
|
) |
|
332
|
|
|
), |
|
333
|
|
|
), |
|
334
|
|
|
BooleanField( |
|
335
|
|
|
'SelfVerificationEnabled', |
|
336
|
|
|
schemata="Analyses", |
|
337
|
|
|
default=False, |
|
338
|
|
|
widget=BooleanWidget( |
|
339
|
|
|
label=_("Allow self-verification of results"), |
|
340
|
|
|
description=_( |
|
341
|
|
|
"If enabled, a user who submitted a result will also be able " |
|
342
|
|
|
"to verify it. This setting only take effect for those users " |
|
343
|
|
|
"with a role assigned that allows them to verify results " |
|
344
|
|
|
"(by default, managers, labmanagers and verifiers)." |
|
345
|
|
|
"This setting can be overrided for a given Analysis in " |
|
346
|
|
|
"Analysis Service edit view. By default, disabled."), |
|
347
|
|
|
), |
|
348
|
|
|
), |
|
349
|
|
|
IntegerField( |
|
350
|
|
|
'NumberOfRequiredVerifications', |
|
351
|
|
|
schemata="Analyses", |
|
352
|
|
|
default=1, |
|
353
|
|
|
vocabulary="_getNumberOfRequiredVerificationsVocabulary", |
|
354
|
|
|
widget=SelectionWidget( |
|
355
|
|
|
format="select", |
|
356
|
|
|
label=_("Number of required verifications"), |
|
357
|
|
|
description=_( |
|
358
|
|
|
"Number of required verifications before a given result being " |
|
359
|
|
|
"considered as 'verified'. This setting can be overrided for " |
|
360
|
|
|
"any Analysis in Analysis Service edit view. By default, 1"), |
|
361
|
|
|
), |
|
362
|
|
|
), |
|
363
|
|
|
StringField( |
|
364
|
|
|
'TypeOfmultiVerification', |
|
365
|
|
|
schemata="Analyses", |
|
366
|
|
|
default='self_multi_enabled', |
|
367
|
|
|
vocabulary=MULTI_VERIFICATION_TYPE, |
|
368
|
|
|
widget=SelectionWidget( |
|
369
|
|
|
label=_("Multi Verification type"), |
|
370
|
|
|
description=_( |
|
371
|
|
|
"Choose type of multiple verification for the same user." |
|
372
|
|
|
"This setting can enable/disable verifying/consecutively verifying" |
|
373
|
|
|
"more than once for the same user."), |
|
374
|
|
|
format='select', |
|
375
|
|
|
) |
|
376
|
|
|
), |
|
377
|
|
|
LinesField( |
|
378
|
|
|
'ARImportOption', |
|
379
|
|
|
schemata="Analyses", |
|
380
|
|
|
vocabulary=ARIMPORT_OPTIONS, |
|
381
|
|
|
widget=MultiSelectionWidget( |
|
382
|
|
|
visible=False, |
|
383
|
|
|
label=_("AR Import options"), |
|
384
|
|
|
description=_( |
|
385
|
|
|
"'Classic' indicates importing samples per sample and " |
|
386
|
|
|
"analysis service selection. With 'Profiles', analysis profile keywords " |
|
387
|
|
|
"are used to select multiple analysis services together"), |
|
388
|
|
|
) |
|
389
|
|
|
), |
|
390
|
|
|
StringField( |
|
391
|
|
|
'ARAttachmentOption', |
|
392
|
|
|
schemata="Analyses", |
|
393
|
|
|
default='p', |
|
394
|
|
|
vocabulary=ATTACHMENT_OPTIONS, |
|
395
|
|
|
widget=SelectionWidget( |
|
396
|
|
|
format='select', |
|
397
|
|
|
label=_("Sample Attachment Option"), |
|
398
|
|
|
description=_( |
|
399
|
|
|
"The system wide default configuration to indicate " |
|
400
|
|
|
"whether file attachments are required, permitted or not " |
|
401
|
|
|
"per sample"), |
|
402
|
|
|
) |
|
403
|
|
|
), |
|
404
|
|
|
StringField( |
|
405
|
|
|
'AnalysisAttachmentOption', |
|
406
|
|
|
schemata="Analyses", |
|
407
|
|
|
default='p', |
|
408
|
|
|
vocabulary=ATTACHMENT_OPTIONS, |
|
409
|
|
|
widget=SelectionWidget( |
|
410
|
|
|
format='select', |
|
411
|
|
|
label=_("Analysis Attachment Option"), |
|
412
|
|
|
description=_( |
|
413
|
|
|
"Same as the above, but sets the default on analysis services. " |
|
414
|
|
|
"This setting can be set per individual analysis on its " |
|
415
|
|
|
"own configuration"), |
|
416
|
|
|
) |
|
417
|
|
|
), |
|
418
|
|
|
StringField( |
|
419
|
|
|
'ResultsDecimalMark', |
|
420
|
|
|
schemata="Analyses", |
|
421
|
|
|
vocabulary=DECIMAL_MARKS, |
|
422
|
|
|
default=".", |
|
423
|
|
|
widget=SelectionWidget( |
|
424
|
|
|
label=_("Default decimal mark"), |
|
425
|
|
|
description=_("Preferred decimal mark for results"), |
|
426
|
|
|
format='select', |
|
427
|
|
|
) |
|
428
|
|
|
), |
|
429
|
|
|
StringField( |
|
430
|
|
|
'ScientificNotationResults', |
|
431
|
|
|
schemata="Analyses", |
|
432
|
|
|
default='1', |
|
433
|
|
|
vocabulary=SCINOTATION_OPTIONS, |
|
434
|
|
|
widget=SelectionWidget( |
|
435
|
|
|
label=_("Default scientific notation format for results"), |
|
436
|
|
|
description=_("Preferred scientific notation format for results"), |
|
437
|
|
|
format='select', |
|
438
|
|
|
) |
|
439
|
|
|
), |
|
440
|
|
|
StringField( |
|
441
|
|
|
'WorksheetLayout', |
|
442
|
|
|
schemata="Appearance", |
|
443
|
|
|
default='1', |
|
444
|
|
|
vocabulary=WORKSHEET_LAYOUT_OPTIONS, |
|
445
|
|
|
widget=SelectionWidget( |
|
446
|
|
|
label=_("Default layout in worksheet view"), |
|
447
|
|
|
description=_("Preferred layout of the results entry table " |
|
448
|
|
|
"in the Worksheet view. Classic layout displays " |
|
449
|
|
|
"the Samples in rows and the analyses " |
|
450
|
|
|
"in columns. Transposed layout displays the " |
|
451
|
|
|
"Samples in columns and the analyses " |
|
452
|
|
|
"in rows."), |
|
453
|
|
|
format='select', |
|
454
|
|
|
) |
|
455
|
|
|
), |
|
456
|
|
|
BooleanField( |
|
457
|
|
|
'DashboardByDefault', |
|
458
|
|
|
schemata="Appearance", |
|
459
|
|
|
default=True, |
|
460
|
|
|
widget=BooleanWidget( |
|
461
|
|
|
label=_("Use Dashboard as default front page"), |
|
462
|
|
|
description=_("Select this to activate the dashboard as a default front page.") |
|
463
|
|
|
), |
|
464
|
|
|
), |
|
465
|
|
|
ReferenceField( |
|
466
|
|
|
'LandingPage', |
|
467
|
|
|
schemata="Appearance", |
|
468
|
|
|
multiValued=0, |
|
469
|
|
|
allowed_types=('Document', ), |
|
470
|
|
|
relationship='SetupLandingPage', |
|
471
|
|
|
widget=ReferenceBrowserWidget( |
|
472
|
|
|
label=_("Landing Page"), |
|
473
|
|
|
description=_("The selected landing page is displayed for non-authenticated users " |
|
474
|
|
|
"and if the Dashboard is not selected as the default front page. " |
|
475
|
|
|
"If no landing page is selected, the default Bika frontpage is displayed."), |
|
476
|
|
|
allow_search=1, |
|
477
|
|
|
allow_browse=1, |
|
478
|
|
|
startup_directory='/', |
|
479
|
|
|
force_close_on_insert=1, |
|
480
|
|
|
default_search_index='SearchableText', |
|
481
|
|
|
base_query={'review_state': 'published'}, |
|
482
|
|
|
), |
|
483
|
|
|
), |
|
484
|
|
|
BooleanField( |
|
485
|
|
|
'PrintingWorkflowEnabled', |
|
486
|
|
|
schemata="Sampling", |
|
487
|
|
|
default=False, |
|
488
|
|
|
widget=BooleanWidget( |
|
489
|
|
|
label=_("Enable the Results Report Printing workflow"), |
|
490
|
|
|
description=_("Select this to allow the user to set an " |
|
491
|
|
|
"additional 'Printed' status to those Analysis " |
|
492
|
|
|
"Requests tha have been Published. " |
|
493
|
|
|
"Disabled by default.") |
|
494
|
|
|
), |
|
495
|
|
|
), |
|
496
|
|
|
BooleanField( |
|
497
|
|
|
'SamplingWorkflowEnabled', |
|
498
|
|
|
schemata="Sampling", |
|
499
|
|
|
default=False, |
|
500
|
|
|
widget=BooleanWidget( |
|
501
|
|
|
label=_("Enable Sampling"), |
|
502
|
|
|
description=_("Select this to activate the sample collection workflow steps.") |
|
503
|
|
|
), |
|
504
|
|
|
), |
|
505
|
|
|
BooleanField( |
|
506
|
|
|
'ScheduleSamplingEnabled', |
|
507
|
|
|
schemata="Sampling", |
|
508
|
|
|
default=False, |
|
509
|
|
|
widget=BooleanWidget( |
|
510
|
|
|
label=_("Enable Sampling Scheduling"), |
|
511
|
|
|
description=_( |
|
512
|
|
|
"Select this to allow a Sampling Coordinator to" + |
|
513
|
|
|
" schedule a sampling. This functionality only takes effect" + |
|
514
|
|
|
" when 'Sampling workflow' is active") |
|
515
|
|
|
), |
|
516
|
|
|
), |
|
517
|
|
|
BooleanField( |
|
518
|
|
|
'ShowPartitions', |
|
519
|
|
|
schemata="Sampling", |
|
520
|
|
|
default=True, |
|
521
|
|
|
widget=BooleanWidget( |
|
522
|
|
|
label=_("Display individual sample partitions "), |
|
523
|
|
|
description=_("Turn this on if you want to work with sample partitions") |
|
524
|
|
|
), |
|
525
|
|
|
), |
|
526
|
|
|
BooleanField( |
|
527
|
|
|
'SamplePreservationEnabled', |
|
528
|
|
|
schemata="Sampling", |
|
529
|
|
|
default=False, |
|
530
|
|
|
widget=BooleanWidget( |
|
531
|
|
|
label=_("Enable Sample Preservation"), |
|
532
|
|
|
description=_("") |
|
533
|
|
|
), |
|
534
|
|
|
), |
|
535
|
|
|
DurationField( |
|
536
|
|
|
'DefaultTurnaroundTime', |
|
537
|
|
|
schemata="Sampling", |
|
538
|
|
|
required=1, |
|
539
|
|
|
default={"days": 5, "hours": 0, "minutes": 0}, |
|
540
|
|
|
widget=DurationWidget( |
|
541
|
|
|
label=_("Default turnaround time for analyses."), |
|
542
|
|
|
description=_( |
|
543
|
|
|
"This is the default maximum time allowed for performing " |
|
544
|
|
|
"analyses. It is only used for analyses where the analysis " |
|
545
|
|
|
"service does not specify a turnaround time."), |
|
546
|
|
|
) |
|
547
|
|
|
), |
|
548
|
|
|
DurationField( |
|
549
|
|
|
'DefaultSampleLifetime', |
|
550
|
|
|
schemata="Sampling", |
|
551
|
|
|
required=1, |
|
552
|
|
|
default={"days": 30, "hours": 0, "minutes": 0}, |
|
553
|
|
|
widget=DurationWidget( |
|
554
|
|
|
label=_("Default sample retention period"), |
|
555
|
|
|
description=_( |
|
556
|
|
|
"The number of days before a sample expires and cannot be analysed " |
|
557
|
|
|
"any more. This setting can be overwritten per individual sample type " |
|
558
|
|
|
"in the sample types setup"), |
|
559
|
|
|
) |
|
560
|
|
|
), |
|
561
|
|
|
BooleanField( |
|
562
|
|
|
'NotifyOnSampleRejection', |
|
563
|
|
|
schemata="Notifications", |
|
564
|
|
|
default=False, |
|
565
|
|
|
widget=BooleanWidget( |
|
566
|
|
|
label=_("Email notification on Sample rejection"), |
|
567
|
|
|
description=_("Select this to activate automatic notifications " |
|
568
|
|
|
"via email to the Client when a Sample is rejected.") |
|
569
|
|
|
), |
|
570
|
|
|
), |
|
571
|
|
|
BooleanField( |
|
572
|
|
|
'NotifyOnSampleInvalidation', |
|
573
|
|
|
schemata="Notifications", |
|
574
|
|
|
default=True, |
|
575
|
|
|
widget=BooleanWidget( |
|
576
|
|
|
label=_("Email notification on Sample invalidation"), |
|
577
|
|
|
description=_("Select this to activate automatic notifications " |
|
578
|
|
|
"via email to the Client and Lab Managers when a " |
|
579
|
|
|
"Sample is invalidated.") |
|
580
|
|
|
), |
|
581
|
|
|
), |
|
582
|
|
|
TextField( |
|
583
|
|
|
"EmailBodySampleInvalidation", |
|
584
|
|
|
default_content_type='text/html', |
|
585
|
|
|
default_output_type='text/x-html-safe', |
|
586
|
|
|
schemata="Notifications", |
|
587
|
|
|
label=_("Email body for Sample Invalidation notifications"), |
|
588
|
|
|
default= |
|
589
|
|
|
"Some non-conformities have been detected in the results report " |
|
590
|
|
|
"published for Sample $sample_link. " |
|
591
|
|
|
"<br/><br/> " |
|
592
|
|
|
"A new Sample $retest_link has been created automatically, and the " |
|
593
|
|
|
"previous request has been invalidated. " |
|
594
|
|
|
"<br/><br/> " |
|
595
|
|
|
"The root cause is under investigation and corrective " |
|
596
|
|
|
"action has been initiated. " |
|
597
|
|
|
"<br/><br/> " |
|
598
|
|
|
"$lab_address", |
|
599
|
|
|
widget=RichWidget( |
|
600
|
|
|
label=_("Email body for Sample Invalidation notifications"), |
|
601
|
|
|
description=_("Set the text for the body of the email to be sent, " |
|
602
|
|
|
", if option 'Email notification on Sample " |
|
603
|
|
|
"'invalidation' enabled, to the Sample's client " |
|
604
|
|
|
"contact. You can use reserved keywords: $sample_id, " |
|
605
|
|
|
"$sample_link, $retest_id, $retest_link, " |
|
606
|
|
|
"$lab_address"), |
|
607
|
|
|
default_mime_type='text/x-rst', |
|
608
|
|
|
output_mime_type='text/x-html', |
|
609
|
|
|
allow_file_upload=False, |
|
610
|
|
|
rows=10, |
|
611
|
|
|
), |
|
612
|
|
|
), |
|
613
|
|
|
StringField( |
|
614
|
|
|
'AutoPrintStickers', |
|
615
|
|
|
schemata="Sticker", |
|
616
|
|
|
vocabulary=STICKER_AUTO_OPTIONS, |
|
617
|
|
|
widget=SelectionWidget( |
|
618
|
|
|
format='select', |
|
619
|
|
|
label=_("Automatic sticker printing"), |
|
620
|
|
|
description=_( |
|
621
|
|
|
"Select 'Register' if you want stickers to be automatically printed when " |
|
622
|
|
|
"new Samples or sample records are created. Select 'Receive' to print stickers " |
|
623
|
|
|
"when Samples or Samples are received. Select 'None' to disable automatic printing"), |
|
624
|
|
|
) |
|
625
|
|
|
), |
|
626
|
|
|
StringField( |
|
627
|
|
|
'AutoStickerTemplate', |
|
628
|
|
|
schemata="Sticker", |
|
629
|
|
|
vocabulary="getStickerTemplates", |
|
630
|
|
|
widget=SelectionWidget( |
|
631
|
|
|
format='select', |
|
632
|
|
|
label=_("Sticker templates"), |
|
633
|
|
|
description=_("Select which sticker to print when automatic sticker printing is enabled"), |
|
634
|
|
|
) |
|
635
|
|
|
), |
|
636
|
|
|
StringField( |
|
637
|
|
|
'SmallStickerTemplate', |
|
638
|
|
|
schemata="Sticker", |
|
639
|
|
|
vocabulary="getStickerTemplates", |
|
640
|
|
|
default="Code_128_1x48mm.pt", |
|
641
|
|
|
widget=SelectionWidget( |
|
642
|
|
|
format='select', |
|
643
|
|
|
label=_("Small sticker"), |
|
644
|
|
|
description=_("Select which sticker should be used as the 'small' sticker by default") |
|
645
|
|
|
) |
|
646
|
|
|
), |
|
647
|
|
|
StringField( |
|
648
|
|
|
'LargeStickerTemplate', |
|
649
|
|
|
schemata="Sticker", |
|
650
|
|
|
vocabulary="getStickerTemplates", |
|
651
|
|
|
default="Code_128_1x72mm.pt", |
|
652
|
|
|
widget=SelectionWidget( |
|
653
|
|
|
format='select', |
|
654
|
|
|
label=_("Large sticker"), |
|
655
|
|
|
description=_("Select which sticker should be used as the 'large' sticker by default") |
|
656
|
|
|
) |
|
657
|
|
|
), |
|
658
|
|
|
IntegerField( |
|
659
|
|
|
'DefaultNumberOfCopies', |
|
660
|
|
|
schemata="Sticker", |
|
661
|
|
|
required="1", |
|
662
|
|
|
default="1", |
|
663
|
|
|
widget=IntegerWidget( |
|
664
|
|
|
label=_("Number of copies"), |
|
665
|
|
|
description=_("Set the default number of copies to be printed for each sticker") |
|
666
|
|
|
) |
|
667
|
|
|
), |
|
668
|
|
|
IDFormattingField( |
|
669
|
|
|
'IDFormatting', |
|
670
|
|
|
schemata="ID Server", |
|
671
|
|
|
default=[ |
|
672
|
|
|
{ |
|
673
|
|
|
'form': 'AI-{seq:03d}', |
|
674
|
|
|
'portal_type': 'ARImport', |
|
675
|
|
|
'sequence_type': 'generated', |
|
676
|
|
|
'split_length': 1 |
|
677
|
|
|
}, { |
|
678
|
|
|
'form': 'B-{seq:03d}', |
|
679
|
|
|
'portal_type': 'Batch', |
|
680
|
|
|
'prefix': 'batch', |
|
681
|
|
|
'sequence_type': 'generated', |
|
682
|
|
|
'split_length': 1 |
|
683
|
|
|
}, { |
|
684
|
|
|
'form': 'D-{seq:03d}', |
|
685
|
|
|
'portal_type': 'DuplicateAnalysis', |
|
686
|
|
|
'prefix': 'duplicate', |
|
687
|
|
|
'sequence_type': 'generated', |
|
688
|
|
|
'split_length': 1 |
|
689
|
|
|
}, { |
|
690
|
|
|
'form': 'I-{seq:03d}', |
|
691
|
|
|
'portal_type': 'Invoice', |
|
692
|
|
|
'prefix': 'invoice', |
|
693
|
|
|
'sequence_type': 'generated', |
|
694
|
|
|
'split_length': 1 |
|
695
|
|
|
}, { |
|
696
|
|
|
'form': 'QC-{seq:03d}', |
|
697
|
|
|
'portal_type': 'ReferenceSample', |
|
698
|
|
|
'prefix': 'refsample', |
|
699
|
|
|
'sequence_type': 'generated', |
|
700
|
|
|
'split_length': 1 |
|
701
|
|
|
}, { |
|
702
|
|
|
'form': 'SA-{seq:03d}', |
|
703
|
|
|
'portal_type': 'ReferenceAnalysis', |
|
704
|
|
|
'prefix': 'refanalysis', |
|
705
|
|
|
'sequence_type': 'generated', |
|
706
|
|
|
'split_length': 1 |
|
707
|
|
|
}, { |
|
708
|
|
|
'form': 'WS-{seq:03d}', |
|
709
|
|
|
'portal_type': 'Worksheet', |
|
710
|
|
|
'prefix': 'worksheet', |
|
711
|
|
|
'sequence_type': 'generated', |
|
712
|
|
|
'split_length': 1 |
|
713
|
|
|
}, { |
|
714
|
|
|
'form': '{sampleType}-{seq:04d}', |
|
715
|
|
|
'portal_type': 'AnalysisRequest', |
|
716
|
|
|
'prefix': 'analysisrequest', |
|
717
|
|
|
'sequence_type': 'generated', |
|
718
|
|
|
'split_length': 1 |
|
719
|
|
|
}, { |
|
720
|
|
|
'form': '{parent_ar_id}-P{partition_count:02d}', |
|
721
|
|
|
'portal_type': 'AnalysisRequestPartition', |
|
722
|
|
|
'prefix': 'analysisrequestpartition', |
|
723
|
|
|
'sequence_type': '', |
|
724
|
|
|
'split-length': 1 |
|
725
|
|
|
}, { |
|
726
|
|
|
'form': '{parent_base_id}-R{retest_count:02d}', |
|
727
|
|
|
'portal_type': 'AnalysisRequestRetest', |
|
728
|
|
|
'prefix': 'analysisrequestretest', |
|
729
|
|
|
'sequence_type': '', |
|
730
|
|
|
'split-length': 1 |
|
731
|
|
|
}, { |
|
732
|
|
|
'form': '{parent_ar_id}-S{secondary_count:02d}', |
|
733
|
|
|
'portal_type': 'AnalysisRequestSecondary', |
|
734
|
|
|
'prefix': 'analysisrequestsecondary', |
|
735
|
|
|
'sequence_type': '', |
|
736
|
|
|
'split-length': 1 |
|
737
|
|
|
}, |
|
738
|
|
|
], |
|
739
|
|
|
widget=RecordsWidget( |
|
740
|
|
|
label=_("Formatting Configuration"), |
|
741
|
|
|
allowDelete=True, |
|
742
|
|
|
description=_( |
|
743
|
|
|
" <p>The Bika LIMS ID Server provides unique sequential IDs " |
|
744
|
|
|
"for objects such as Samples and Worksheets etc, based on a " |
|
745
|
|
|
"format specified for each content type.</p>" |
|
746
|
|
|
"<p>The format is constructed similarly to the Python format" |
|
747
|
|
|
" syntax, using predefined variables per content type, and" |
|
748
|
|
|
" advancing the IDs through a sequence number, 'seq' and its" |
|
749
|
|
|
" padding as a number of digits, e.g. '03d' for a sequence of" |
|
750
|
|
|
" IDs from 001 to 999.</p>" |
|
751
|
|
|
"<p>Alphanumeric prefixes for IDs are included as is in the" |
|
752
|
|
|
" formats, e.g. WS for Worksheet in WS-{seq:03d} produces" |
|
753
|
|
|
" sequential Worksheet IDs: WS-001, WS-002, WS-003 etc.</p>" |
|
754
|
|
|
"<p>For dynamic generation of alphanumeric and sequential IDs," |
|
755
|
|
|
" the wildcard {alpha} can be used. E.g WS-{alpha:2a3d}" |
|
756
|
|
|
" produces WS-AA001, WS-AA002, WS-AB034, etc.</p>" |
|
757
|
|
|
"<p>Variables that can be used include:" |
|
758
|
|
|
"<table>" |
|
759
|
|
|
"<tr>" |
|
760
|
|
|
"<th style='width:150px'>Content Type</th><th>Variables</th>" |
|
761
|
|
|
"</tr>" |
|
762
|
|
|
"<tr><td>Client</td><td>{client}</td></tr>" |
|
763
|
|
|
"<tr><td>Year</td><td>{year}</td></tr>" |
|
764
|
|
|
"<tr><td>Sample ID</td><td>{sampleId}</td></tr>" |
|
765
|
|
|
"<tr><td>Sample Type</td><td>{sampleType}</td></tr>" |
|
766
|
|
|
"<tr><td>Sampling Date</td><td>{samplingDate}</td></tr>" |
|
767
|
|
|
"<tr><td>Date Sampled</td><td>{dateSampled}</td></tr>" |
|
768
|
|
|
"</table>" |
|
769
|
|
|
"</p>" |
|
770
|
|
|
"<p>Configuration Settings:" |
|
771
|
|
|
"<ul>" |
|
772
|
|
|
"<li>format:" |
|
773
|
|
|
"<ul><li>a python format string constructed from predefined" |
|
774
|
|
|
" variables like sampleId, client, sampleType.</li>" |
|
775
|
|
|
"<li>special variable 'seq' must be positioned last in the" |
|
776
|
|
|
"format string</li></ul></li>" |
|
777
|
|
|
"<li>sequence type: [generated|counter]</li>" |
|
778
|
|
|
"<li>context: if type counter, provides context the counting" |
|
779
|
|
|
" function</li>" |
|
780
|
|
|
"<li>counter type: [backreference|contained]</li>" |
|
781
|
|
|
"<li>counter reference: a parameter to the counting" |
|
782
|
|
|
" function</li>" |
|
783
|
|
|
"<li>prefix: default prefix if none provided in format" |
|
784
|
|
|
" string</li>" |
|
785
|
|
|
"<li>split length: the number of parts to be included in the" |
|
786
|
|
|
" prefix</li>" |
|
787
|
|
|
"</ul></p>") |
|
788
|
|
|
) |
|
789
|
|
|
), |
|
790
|
|
|
StringField( |
|
791
|
|
|
'IDServerValues', |
|
792
|
|
|
schemata="ID Server", |
|
793
|
|
|
accessor="getIDServerValuesHTML", |
|
794
|
|
|
readonly=True, |
|
795
|
|
|
widget=TextAreaWidget( |
|
796
|
|
|
label=_("ID Server Values"), |
|
797
|
|
|
cols=30, |
|
798
|
|
|
rows=30, |
|
799
|
|
|
), |
|
800
|
|
|
), |
|
801
|
|
|
RecordsField( |
|
802
|
|
|
'RejectionReasons', |
|
803
|
|
|
schemata="Analyses", |
|
804
|
|
|
widget=RejectionSetupWidget( |
|
805
|
|
|
label=_("Enable the rejection workflow"), |
|
806
|
|
|
description=_("Select this to activate the rejection workflow " |
|
807
|
|
|
"for Samples. A 'Reject' option will be displayed in " |
|
808
|
|
|
"the actions menu.") |
|
809
|
|
|
), |
|
810
|
|
|
), |
|
811
|
|
|
IntegerField( |
|
812
|
|
|
'DefaultNumberOfARsToAdd', |
|
813
|
|
|
schemata="Analyses", |
|
814
|
|
|
required=0, |
|
815
|
|
|
default=4, |
|
816
|
|
|
widget=IntegerWidget( |
|
817
|
|
|
label=_("Default count of Sample to add."), |
|
818
|
|
|
description=_("Default value of the 'Sample count' when users click 'ADD' button to create new Samples"), |
|
819
|
|
|
) |
|
820
|
|
|
), |
|
821
|
|
|
)) |
|
822
|
|
|
|
|
823
|
|
|
schema['title'].validators = () |
|
824
|
|
|
schema['title'].widget.visible = False |
|
825
|
|
|
# Update the validation layer after change the validator in runtime |
|
826
|
|
|
schema['title']._validationLayer() |
|
827
|
|
|
|
|
828
|
|
|
|
|
829
|
|
|
class BikaSetup(folder.ATFolder): |
|
830
|
|
|
"""LIMS Setup |
|
831
|
|
|
""" |
|
832
|
|
|
implements(IBikaSetup, IHaveNoBreadCrumbs) |
|
833
|
|
|
|
|
834
|
|
|
schema = schema |
|
|
|
|
|
|
835
|
|
|
security = ClassSecurityInfo() |
|
836
|
|
|
|
|
837
|
|
|
def getAttachmentsPermitted(self): |
|
838
|
|
|
"""Attachments permitted |
|
839
|
|
|
""" |
|
840
|
|
|
if self.getARAttachmentOption() in ['r', 'p'] \ |
|
841
|
|
|
or self.getAnalysisAttachmentOption() in ['r', 'p']: |
|
842
|
|
|
return True |
|
843
|
|
|
else: |
|
844
|
|
|
return False |
|
845
|
|
|
|
|
846
|
|
|
def getStickerTemplates(self): |
|
847
|
|
|
"""Get the sticker templates |
|
848
|
|
|
""" |
|
849
|
|
|
out = [[t['id'], t['title']] for t in _getStickerTemplates()] |
|
850
|
|
|
return DisplayList(out) |
|
851
|
|
|
|
|
852
|
|
|
def getARAttachmentsPermitted(self): |
|
853
|
|
|
"""AR attachments permitted |
|
854
|
|
|
""" |
|
855
|
|
|
if self.getARAttachmentOption() == 'n': |
|
856
|
|
|
return False |
|
857
|
|
|
else: |
|
858
|
|
|
return True |
|
859
|
|
|
|
|
860
|
|
|
def getAnalysisAttachmentsPermitted(self): |
|
861
|
|
|
"""Analysis attachments permitted |
|
862
|
|
|
""" |
|
863
|
|
|
if self.getAnalysisAttachmentOption() == 'n': |
|
864
|
|
|
return False |
|
865
|
|
|
else: |
|
866
|
|
|
return True |
|
867
|
|
|
|
|
868
|
|
|
def getAnalysisServicesVocabulary(self): |
|
869
|
|
|
""" |
|
870
|
|
|
Get all active Analysis Services from Bika Setup and return them as Display List. |
|
871
|
|
|
""" |
|
872
|
|
|
bsc = getToolByName(self, 'bika_setup_catalog') |
|
873
|
|
|
brains = bsc(portal_type='AnalysisService', |
|
874
|
|
|
is_active=True) |
|
875
|
|
|
items = [(b.UID, b.Title) for b in brains] |
|
876
|
|
|
items.insert(0, ("", "")) |
|
877
|
|
|
items.sort(lambda x, y: cmp(x[1], y[1])) |
|
878
|
|
|
return DisplayList(list(items)) |
|
879
|
|
|
|
|
880
|
|
|
def getPrefixFor(self, portal_type): |
|
881
|
|
|
"""Return the prefix for a portal_type. |
|
882
|
|
|
If not found, simply uses the portal_type itself |
|
883
|
|
|
""" |
|
884
|
|
|
prefix = [p for p in self.getIDFormatting() if p['portal_type'] == portal_type] |
|
885
|
|
|
if prefix: |
|
886
|
|
|
return prefix[0]['prefix'] |
|
887
|
|
|
else: |
|
888
|
|
|
return portal_type |
|
889
|
|
|
|
|
890
|
|
|
def getCountries(self): |
|
891
|
|
|
items = [(x['ISO'], x['Country']) for x in COUNTRIES] |
|
892
|
|
|
items.sort(lambda x, y: cmp(x[1], y[1])) |
|
893
|
|
|
return items |
|
894
|
|
|
|
|
895
|
|
|
def isRejectionWorkflowEnabled(self): |
|
896
|
|
|
"""Return true if the rejection workflow is enabled (its checkbox is set) |
|
897
|
|
|
""" |
|
898
|
|
|
widget = self.getRejectionReasons() |
|
899
|
|
|
# widget will be something like: |
|
900
|
|
|
# [{'checkbox': u'on', 'textfield-2': u'b', 'textfield-1': u'c', 'textfield-0': u'a'}] |
|
901
|
|
|
if len(widget) > 0: |
|
902
|
|
|
checkbox = widget[0].get('checkbox', False) |
|
903
|
|
|
return True if checkbox == 'on' and len(widget[0]) > 1 else False |
|
904
|
|
|
else: |
|
905
|
|
|
return False |
|
906
|
|
|
|
|
907
|
|
|
def getRejectionReasonsItems(self): |
|
908
|
|
|
"""Return the list of predefined rejection reasons |
|
909
|
|
|
""" |
|
910
|
|
|
reasons = self.getRejectionReasons() |
|
911
|
|
|
if not reasons: |
|
912
|
|
|
return [] |
|
913
|
|
|
reasons = reasons[0] |
|
914
|
|
|
keys = filter(lambda key: key != "checkbox", reasons.keys()) |
|
915
|
|
|
return map(lambda key: reasons[key], sorted(keys)) or [] |
|
916
|
|
|
|
|
917
|
|
|
def _getNumberOfRequiredVerificationsVocabulary(self): |
|
918
|
|
|
""" |
|
919
|
|
|
Returns a DisplayList with the available options for the |
|
920
|
|
|
multi-verification list: '1', '2', '3', '4' |
|
921
|
|
|
:returns: DisplayList with the available options for the |
|
922
|
|
|
multi-verification list |
|
923
|
|
|
""" |
|
924
|
|
|
items = [(1, '1'), (2, '2'), (3, '3'), (4, '4')] |
|
925
|
|
|
return IntDisplayList(list(items)) |
|
926
|
|
|
|
|
927
|
|
|
def getIDServerValuesHTML(self): |
|
928
|
|
|
number_generator = getUtility(INumberGenerator) |
|
929
|
|
|
keys = number_generator.keys() |
|
930
|
|
|
values = number_generator.values() |
|
931
|
|
|
results = [] |
|
932
|
|
|
for i in range(len(keys)): |
|
933
|
|
|
results.append('%s: %s' % (keys[i], values[i])) |
|
934
|
|
|
return "\n".join(results) |
|
935
|
|
|
|
|
936
|
|
|
|
|
937
|
|
|
registerType(BikaSetup, PROJECTNAME) |
|
938
|
|
|
|
senaite /
senaite.core
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