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# -*- coding: utf-8 -*- |
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# |
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# This file is part of SENAITE.CORE |
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# |
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# Copyright 2018 by it's authors. |
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# Some rights reserved. See LICENSE.rst, CONTRIBUTORS.rst. |
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import sys |
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from decimal import Decimal |
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from AccessControl import ClassSecurityInfo |
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from bika.lims import api |
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from bika.lims import bikaMessageFactory as _ |
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from bika.lims import deprecated |
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from bika.lims import logger |
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from bika.lims.browser.fields import ARAnalysesField |
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from bika.lims.browser.fields import DateTimeField |
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from bika.lims.browser.fields import DurationField |
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from bika.lims.browser.fields import UIDReferenceField |
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from bika.lims.browser.fields.remarksfield import RemarksField |
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from bika.lims.browser.widgets import DateTimeWidget |
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from bika.lims.browser.widgets import DecimalWidget |
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from bika.lims.browser.widgets import PrioritySelectionWidget |
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from bika.lims.browser.widgets import ReferenceWidget |
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from bika.lims.browser.widgets import RejectionWidget |
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from bika.lims.browser.widgets import RemarksWidget |
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from bika.lims.browser.widgets import SelectionWidget as BikaSelectionWidget |
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from bika.lims.browser.widgets.durationwidget import DurationWidget |
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from bika.lims.catalog import CATALOG_ANALYSIS_LISTING |
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from bika.lims.catalog import CATALOG_ANALYSIS_REQUEST_LISTING |
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from bika.lims.config import PRIORITIES |
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from bika.lims.config import PROJECTNAME |
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from bika.lims.content.analysisspec import ResultsRangeDict |
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from bika.lims.content.bikaschema import BikaSchema |
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from bika.lims.interfaces import IAnalysisRequest |
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from bika.lims.interfaces import IAnalysisRequestPartition |
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from bika.lims.interfaces import ICancellable |
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from bika.lims.permissions import FieldEditBatch |
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from bika.lims.permissions import FieldEditClient |
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from bika.lims.permissions import FieldEditClientOrderNumber |
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from bika.lims.permissions import FieldEditClientReference |
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from bika.lims.permissions import FieldEditClientSampleID |
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from bika.lims.permissions import FieldEditComposite |
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from bika.lims.permissions import FieldEditContact |
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from bika.lims.permissions import FieldEditContainer |
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from bika.lims.permissions import FieldEditDatePreserved |
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from bika.lims.permissions import FieldEditDateReceived |
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from bika.lims.permissions import FieldEditDateSampled |
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from bika.lims.permissions import FieldEditEnvironmentalConditions |
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from bika.lims.permissions import FieldEditInvoiceExclude |
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from bika.lims.permissions import FieldEditMemberDiscount |
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from bika.lims.permissions import FieldEditPreservation |
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from bika.lims.permissions import FieldEditPreserver |
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from bika.lims.permissions import FieldEditPriority |
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from bika.lims.permissions import FieldEditProfiles |
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from bika.lims.permissions import FieldEditPublicationSpecifications |
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from bika.lims.permissions import FieldEditRejectionReasons |
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from bika.lims.permissions import FieldEditRemarks |
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from bika.lims.permissions import FieldEditResultsInterpretation |
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from bika.lims.permissions import FieldEditSampleCondition |
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from bika.lims.permissions import FieldEditSamplePoint |
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from bika.lims.permissions import FieldEditSampler |
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from bika.lims.permissions import FieldEditSampleType |
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from bika.lims.permissions import FieldEditSamplingDate |
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from bika.lims.permissions import FieldEditSamplingDeviation |
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from bika.lims.permissions import FieldEditSamplingRound |
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from bika.lims.permissions import FieldEditScheduledSampler |
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from bika.lims.permissions import FieldEditSpecification |
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from bika.lims.permissions import FieldEditStorageLocation |
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from bika.lims.permissions import FieldEditTemplate |
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from bika.lims.permissions import ManageInvoices |
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from bika.lims.utils import getUsers |
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from bika.lims.utils import tmpID |
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from bika.lims.utils import user_email |
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from bika.lims.utils import user_fullname |
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from bika.lims.workflow import getTransitionDate |
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from bika.lims.workflow import getTransitionUsers |
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from DateTime import DateTime |
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from Products.Archetypes.atapi import BaseFolder |
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from Products.Archetypes.atapi import BooleanField |
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from Products.Archetypes.atapi import BooleanWidget |
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from Products.Archetypes.atapi import ComputedField |
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from Products.Archetypes.atapi import ComputedWidget |
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from Products.Archetypes.atapi import FileField |
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from Products.Archetypes.atapi import FileWidget |
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from Products.Archetypes.atapi import FixedPointField |
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from Products.Archetypes.atapi import ReferenceField |
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from Products.Archetypes.atapi import StringField |
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from Products.Archetypes.atapi import StringWidget |
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from Products.Archetypes.atapi import TextField |
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from Products.Archetypes.atapi import registerType |
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from Products.Archetypes.public import Schema |
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from Products.Archetypes.references import HoldingReference |
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from Products.Archetypes.Widget import RichWidget |
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from Products.ATExtensions.field import RecordsField |
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from Products.CMFCore.permissions import ModifyPortalContent |
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from Products.CMFCore.permissions import View |
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from Products.CMFCore.utils import getToolByName |
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from Products.CMFPlone.utils import _createObjectByType |
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from Products.CMFPlone.utils import safe_unicode |
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from zope.interface import alsoProvides |
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from zope.interface import implements |
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from zope.interface import noLongerProvides |
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# SCHEMA DEFINITION |
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schema = BikaSchema.copy() + Schema(( |
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UIDReferenceField( |
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'Contact', |
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required=1, |
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default_method='getContactUIDForUser', |
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allowed_types=('Contact',), |
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mode="rw", |
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read_permission=View, |
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write_permission=FieldEditContact, |
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widget=ReferenceWidget( |
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label=_("Contact"), |
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render_own_label=True, |
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size=20, |
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helper_js=("bika_widgets/referencewidget.js", |
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"++resource++bika.lims.js/contact.js"), |
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description=_("The primary contact of this sample, " |
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"who will receive notifications and publications " |
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"via email"), |
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visible={ |
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'add': 'edit', |
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'header_table': 'prominent', |
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}, |
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base_query={'is_active': True}, |
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showOn=True, |
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popup_width='400px', |
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colModel=[ |
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{'columnName': 'UID', 'hidden': True}, |
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{'columnName': 'Fullname', 'width': '50', |
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'label': _('Name')}, |
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{'columnName': 'EmailAddress', 'width': '50', |
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'label': _('Email Address')}, |
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], |
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), |
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), |
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ReferenceField( |
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'CCContact', |
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multiValued=1, |
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vocabulary_display_path_bound=sys.maxsize, |
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allowed_types=('Contact',), |
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referenceClass=HoldingReference, |
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relationship='AnalysisRequestCCContact', |
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mode="rw", |
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read_permission=View, |
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write_permission=FieldEditContact, |
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widget=ReferenceWidget( |
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label=_("CC Contacts"), |
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description=_("The contacts used in CC for email notifications"), |
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render_own_label=True, |
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size=20, |
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visible={ |
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'add': 'edit', |
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'header_table': 'prominent', |
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}, |
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base_query={'is_active': True}, |
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showOn=True, |
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popup_width='400px', |
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colModel=[ |
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{'columnName': 'UID', 'hidden': True}, |
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{'columnName': 'Fullname', 'width': '50', |
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'label': _('Name')}, |
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{'columnName': 'EmailAddress', 'width': '50', |
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'label': _('Email Address')}, |
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], |
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), |
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), |
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StringField( |
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'CCEmails', |
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mode="rw", |
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read_permission=View, |
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write_permission=FieldEditContact, |
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acquire=True, |
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acquire_fieldname="CCEmails", |
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widget=StringWidget( |
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label=_("CC Emails"), |
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description=_("Additional email addresses to be notified"), |
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visible={ |
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'add': 'edit', |
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'header_table': 'prominent', |
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}, |
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render_own_label=True, |
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size=20, |
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), |
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), |
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ReferenceField( |
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'Client', |
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required=1, |
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allowed_types=('Client',), |
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relationship='AnalysisRequestClient', |
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mode="rw", |
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read_permission=View, |
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write_permission=FieldEditClient, |
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widget=ReferenceWidget( |
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label=_("Client"), |
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description=_("The assigned client of this request"), |
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size=20, |
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render_own_label=True, |
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visible={ |
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'add': 'edit', |
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'header_table': 'prominent', |
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}, |
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base_query={'review_state': 'active'}, |
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showOn=True, |
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add_button={ |
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'visible': True, |
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'url': 'clients/createObject?type_name=Client', |
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'return_fields': ['Title'], |
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'js_controllers': ['#client-base-edit'], |
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'overlay_handler': 'ClientOverlayHandler', |
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} |
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), |
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), |
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# TODO Remove in >v1.3.0 - This is kept for upgrade and backwards-compat. |
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UIDReferenceField( |
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'Sample', |
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allowed_types=('Sample',), |
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mode="rw", |
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read_permission=View, |
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write_permission=ModifyPortalContent, |
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widget=ReferenceWidget( |
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label=_("Sample"), |
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description=_("Select a sample to create a secondary Sample"), |
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size=20, |
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render_own_label=True, |
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visible=False, |
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catalog_name='bika_catalog', |
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base_query={'is_active': True, |
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'review_state': ['sample_due', 'sample_received', ]}, |
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showOn=True, |
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), |
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), |
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# Field for the creation of Secondary Analysis Requests. |
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# This field is meant to be displayed in AR Add form only. A viewlet exists |
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# to inform the user this Analysis Request is secondary |
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ReferenceField( |
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"PrimaryAnalysisRequest", |
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allowed_types=("AnalysisRequest",), |
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referenceClass=HoldingReference, |
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relationship='AnalysisRequestPrimaryAnalysisRequest', |
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mode="rw", |
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read_permission=View, |
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write_permission=FieldEditClient, |
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widget=ReferenceWidget( |
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label=_("Primary Sample"), |
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description=_("Select a sample to create a secondary Sample"), |
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size=20, |
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render_own_label=True, |
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visible={ |
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'add': 'edit', |
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'header_table': 'prominent', |
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}, |
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catalog_name=CATALOG_ANALYSIS_REQUEST_LISTING, |
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colModel=[ |
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{'columnName': 'getId', 'width': '20', |
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'label': _('Sample ID'), 'align': 'left'}, |
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{'columnName': 'getClientSampleID', 'width': '20', |
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'label': _('Client SID'), 'align': 'left'}, |
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{'columnName': 'getSampleTypeTitle', 'width': '30', |
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'label': _('Sample Type'), 'align': 'left'}, |
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{'columnName': 'getClientTitle', 'width': '30', |
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'label': _('Client'), 'align': 'left'}, |
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{'columnName': 'UID', 'hidden': True}, |
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], |
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base_query={'is_active': True, 'is_received': True}, |
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sidx='getId', |
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sord='desc', |
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showOn=True, |
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) |
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), |
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ReferenceField( |
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'Batch', |
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allowed_types=('Batch',), |
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relationship='AnalysisRequestBatch', |
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mode="rw", |
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read_permission=View, |
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write_permission=FieldEditBatch, |
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widget=ReferenceWidget( |
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label=_("Batch"), |
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size=20, |
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description=_("The assigned batch of this request"), |
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render_own_label=True, |
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visible={ |
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'add': 'edit', |
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}, |
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catalog_name='bika_catalog', |
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base_query={'review_state': 'open'}, |
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showOn=True, |
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), |
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), |
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ReferenceField( |
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'SamplingRound', |
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allowed_types=('SamplingRound',), |
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relationship='AnalysisRequestSamplingRound', |
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mode="rw", |
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read_permission=View, |
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write_permission=FieldEditSamplingRound, |
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widget=ReferenceWidget( |
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label=_("Sampling Round"), |
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description=_("The assigned sampling round of this request"), |
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size=20, |
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render_own_label=True, |
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visible={ |
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'add': 'invisible', |
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}, |
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catalog_name='portal_catalog', |
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base_query={}, |
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showOn=True, |
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), |
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), |
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ReferenceField( |
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'SubGroup', |
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required=False, |
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allowed_types=('SubGroup',), |
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referenceClass=HoldingReference, |
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relationship='AnalysisRequestSubGroup', |
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mode="rw", |
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read_permission=View, |
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write_permission=FieldEditBatch, |
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widget=ReferenceWidget( |
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label=_("Batch Sub-group"), |
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description=_("The assigned batch sub group of this request"), |
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size=20, |
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render_own_label=True, |
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visible={ |
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'add': 'edit', |
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}, |
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catalog_name='bika_setup_catalog', |
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colModel=[ |
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{'columnName': 'Title', 'width': '30', |
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'label': _('Title'), 'align': 'left'}, |
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{'columnName': 'Description', 'width': '70', |
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'label': _('Description'), 'align': 'left'}, |
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{'columnName': 'SortKey', 'hidden': True}, |
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{'columnName': 'UID', 'hidden': True}, |
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], |
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base_query={'is_active': True}, |
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sidx='SortKey', |
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sord='asc', |
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showOn=True, |
352
|
|
|
), |
353
|
|
|
), |
354
|
|
|
|
355
|
|
|
ReferenceField( |
356
|
|
|
'Template', |
357
|
|
|
allowed_types=('ARTemplate',), |
358
|
|
|
referenceClass=HoldingReference, |
359
|
|
|
relationship='AnalysisRequestARTemplate', |
360
|
|
|
mode="rw", |
361
|
|
|
read_permission=View, |
362
|
|
|
write_permission=FieldEditTemplate, |
363
|
|
|
widget=ReferenceWidget( |
364
|
|
|
label=_("Sample Template"), |
365
|
|
|
description=_("The predefined values of the Sample template are set " |
366
|
|
|
"in the request"), |
367
|
|
|
size=20, |
368
|
|
|
render_own_label=True, |
369
|
|
|
visible={ |
370
|
|
|
'add': 'edit', |
371
|
|
|
'secondary': 'disabled', |
372
|
|
|
}, |
373
|
|
|
catalog_name='bika_setup_catalog', |
374
|
|
|
base_query={'is_active': True}, |
375
|
|
|
showOn=True, |
376
|
|
|
), |
377
|
|
|
), |
378
|
|
|
|
379
|
|
|
# TODO Remove Profile field (in singular) |
380
|
|
|
ReferenceField( |
381
|
|
|
'Profile', |
382
|
|
|
allowed_types=('AnalysisProfile',), |
383
|
|
|
referenceClass=HoldingReference, |
384
|
|
|
relationship='AnalysisRequestAnalysisProfile', |
385
|
|
|
mode="rw", |
386
|
|
|
read_permission=View, |
387
|
|
|
write_permission=ModifyPortalContent, |
388
|
|
|
widget=ReferenceWidget( |
389
|
|
|
label=_("Analysis Profile"), |
390
|
|
|
description=_("Analysis profiles apply a certain set of analyses"), |
391
|
|
|
size=20, |
392
|
|
|
render_own_label=True, |
393
|
|
|
visible=False, |
394
|
|
|
catalog_name='bika_setup_catalog', |
395
|
|
|
base_query={'is_active': True}, |
396
|
|
|
showOn=False, |
397
|
|
|
), |
398
|
|
|
), |
399
|
|
|
|
400
|
|
|
ReferenceField( |
401
|
|
|
'Profiles', |
402
|
|
|
multiValued=1, |
403
|
|
|
allowed_types=('AnalysisProfile',), |
404
|
|
|
referenceClass=HoldingReference, |
405
|
|
|
vocabulary_display_path_bound=sys.maxsize, |
406
|
|
|
relationship='AnalysisRequestAnalysisProfiles', |
407
|
|
|
mode="rw", |
408
|
|
|
read_permission=View, |
409
|
|
|
write_permission=FieldEditProfiles, |
410
|
|
|
widget=ReferenceWidget( |
411
|
|
|
label=_("Analysis Profiles"), |
412
|
|
|
description=_("Analysis profiles apply a certain set of analyses"), |
413
|
|
|
size=20, |
414
|
|
|
render_own_label=True, |
415
|
|
|
visible={ |
416
|
|
|
'add': 'edit', |
417
|
|
|
}, |
418
|
|
|
catalog_name='bika_setup_catalog', |
419
|
|
|
base_query={'is_active': True}, |
420
|
|
|
showOn=True, |
421
|
|
|
), |
422
|
|
|
), |
423
|
|
|
# TODO Workflow - Request - Fix DateSampled inconsistencies. At the moment, |
424
|
|
|
# one can create an AR (using code) with DateSampled set when sampling_wf at |
425
|
|
|
# the same time sampling workflow is active. This might cause |
426
|
|
|
# inconsistencies: AR still in `to_be_sampled`, but getDateSampled returns |
427
|
|
|
# a valid date! |
428
|
|
|
DateTimeField( |
429
|
|
|
'DateSampled', |
430
|
|
|
mode="rw", |
431
|
|
|
read_permission=View, |
432
|
|
|
write_permission=FieldEditDateSampled, |
433
|
|
|
widget=DateTimeWidget( |
434
|
|
|
label=_("Date Sampled"), |
435
|
|
|
description=_("The date when the sample was taken"), |
436
|
|
|
size=20, |
437
|
|
|
show_time=True, |
438
|
|
|
datepicker_nofuture=1, |
439
|
|
|
visible={ |
440
|
|
|
'add': 'edit', |
441
|
|
|
'secondary': 'disabled', |
442
|
|
|
'header_table': 'prominent', |
443
|
|
|
}, |
444
|
|
|
render_own_label=True, |
445
|
|
|
), |
446
|
|
|
), |
447
|
|
|
StringField( |
448
|
|
|
'Sampler', |
449
|
|
|
mode="rw", |
450
|
|
|
read_permission=View, |
451
|
|
|
write_permission=FieldEditSampler, |
452
|
|
|
vocabulary='getSamplers', |
453
|
|
|
widget=BikaSelectionWidget( |
454
|
|
|
format='select', |
455
|
|
|
label=_("Sampler"), |
456
|
|
|
description=_("The person who took the sample"), |
457
|
|
|
# see SamplingWOrkflowWidgetVisibility |
458
|
|
|
visible={ |
459
|
|
|
'add': 'edit', |
460
|
|
|
'header_table': 'prominent', |
461
|
|
|
}, |
462
|
|
|
render_own_label=True, |
463
|
|
|
), |
464
|
|
|
), |
465
|
|
|
|
466
|
|
|
StringField( |
467
|
|
|
'ScheduledSamplingSampler', |
468
|
|
|
mode="rw", |
469
|
|
|
read_permission=View, |
470
|
|
|
write_permission=FieldEditScheduledSampler, |
471
|
|
|
vocabulary='getSamplers', |
472
|
|
|
widget=BikaSelectionWidget( |
473
|
|
|
description=_("Define the sampler supposed to do the sample in " |
474
|
|
|
"the scheduled date"), |
475
|
|
|
format='select', |
476
|
|
|
label=_("Sampler for scheduled sampling"), |
477
|
|
|
visible={ |
478
|
|
|
'add': 'edit', |
479
|
|
|
}, |
480
|
|
|
render_own_label=True, |
481
|
|
|
), |
482
|
|
|
), |
483
|
|
|
|
484
|
|
|
DateTimeField( |
485
|
|
|
'SamplingDate', |
486
|
|
|
mode="rw", |
487
|
|
|
read_permission=View, |
488
|
|
|
write_permission=FieldEditSamplingDate, |
489
|
|
|
widget=DateTimeWidget( |
490
|
|
|
label=_("Expected Sampling Date"), |
491
|
|
|
description=_("The date when the sample will be taken"), |
492
|
|
|
size=20, |
493
|
|
|
show_time=True, |
494
|
|
|
datepicker_nopast=1, |
495
|
|
|
render_own_label=True, |
496
|
|
|
visible={ |
497
|
|
|
'add': 'edit', |
498
|
|
|
'secondary': 'disabled', |
499
|
|
|
}, |
500
|
|
|
), |
501
|
|
|
), |
502
|
|
|
|
503
|
|
|
UIDReferenceField( |
504
|
|
|
'SampleType', |
505
|
|
|
required=1, |
506
|
|
|
allowed_types='SampleType', |
507
|
|
|
mode="rw", |
508
|
|
|
read_permission=View, |
509
|
|
|
write_permission=FieldEditSampleType, |
510
|
|
|
widget=ReferenceWidget( |
511
|
|
|
label=_("Sample Type"), |
512
|
|
|
render_own_label=True, |
513
|
|
|
visible={ |
514
|
|
|
'add': 'edit', |
515
|
|
|
'secondary': 'disabled', |
516
|
|
|
}, |
517
|
|
|
catalog_name='bika_setup_catalog', |
518
|
|
|
base_query={'is_active': True}, |
519
|
|
|
showOn=True, |
520
|
|
|
), |
521
|
|
|
), |
522
|
|
|
|
523
|
|
|
UIDReferenceField( |
524
|
|
|
'Container', |
525
|
|
|
required=0, |
526
|
|
|
allowed_types='Container', |
527
|
|
|
mode="rw", |
528
|
|
|
read_permission=View, |
529
|
|
|
write_permission=FieldEditContainer, |
530
|
|
|
widget=ReferenceWidget( |
531
|
|
|
label=_("Container"), |
532
|
|
|
render_own_label=True, |
533
|
|
|
visible={ |
534
|
|
|
'add': 'edit', |
535
|
|
|
}, |
536
|
|
|
catalog_name='bika_setup_catalog', |
537
|
|
|
base_query={'is_active': True}, |
538
|
|
|
showOn=True, |
539
|
|
|
), |
540
|
|
|
), |
541
|
|
|
|
542
|
|
|
UIDReferenceField( |
543
|
|
|
'Preservation', |
544
|
|
|
required=0, |
545
|
|
|
allowed_types='Preservation', |
546
|
|
|
mode="rw", |
547
|
|
|
read_permission=View, |
548
|
|
|
write_permission=FieldEditPreservation, |
549
|
|
|
widget=ReferenceWidget( |
550
|
|
|
label=_("Preservation"), |
551
|
|
|
render_own_label=True, |
552
|
|
|
visible={ |
553
|
|
|
'add': 'edit', |
554
|
|
|
}, |
555
|
|
|
catalog_name='bika_setup_catalog', |
556
|
|
|
base_query={'is_active': True}, |
557
|
|
|
showOn=True, |
558
|
|
|
), |
559
|
|
|
), |
560
|
|
|
|
561
|
|
|
DateTimeField('DatePreserved', |
562
|
|
|
mode="rw", |
563
|
|
|
read_permission=View, |
564
|
|
|
write_permission=FieldEditDatePreserved, |
565
|
|
|
widget=DateTimeWidget( |
566
|
|
|
label=_("Date Preserved"), |
567
|
|
|
description=_("The date when the sample was preserved"), |
568
|
|
|
size=20, |
569
|
|
|
show_time=True, |
570
|
|
|
render_own_label=True, |
571
|
|
|
visible={ |
572
|
|
|
'add': 'edit', |
573
|
|
|
'header_table': 'prominent', |
574
|
|
|
}, |
575
|
|
|
), |
576
|
|
|
), |
577
|
|
|
StringField('Preserver', |
578
|
|
|
required=0, |
579
|
|
|
mode="rw", |
580
|
|
|
read_permission=View, |
581
|
|
|
write_permission=FieldEditPreserver, |
582
|
|
|
vocabulary='getPreservers', |
583
|
|
|
widget=BikaSelectionWidget( |
584
|
|
|
format='select', |
585
|
|
|
label=_("Preserver"), |
586
|
|
|
description=_("The person who preserved the sample"), |
587
|
|
|
visible={ |
588
|
|
|
'add': 'edit', |
589
|
|
|
'header_table': 'prominent', |
590
|
|
|
}, |
591
|
|
|
render_own_label=True, |
592
|
|
|
), |
593
|
|
|
), |
594
|
|
|
# TODO Sample cleanup - This comes from partition |
595
|
|
|
DurationField('RetentionPeriod', |
596
|
|
|
required=0, |
597
|
|
|
mode="r", |
598
|
|
|
read_permission=View, |
599
|
|
|
widget=DurationWidget( |
600
|
|
|
label=_("Retention Period"), |
601
|
|
|
visible=False, |
602
|
|
|
), |
603
|
|
|
), |
604
|
|
|
RecordsField( |
605
|
|
|
'RejectionReasons', |
606
|
|
|
mode="rw", |
607
|
|
|
read_permission=View, |
608
|
|
|
write_permission=FieldEditRejectionReasons, |
609
|
|
|
widget=RejectionWidget( |
610
|
|
|
label=_("Sample Rejection"), |
611
|
|
|
description=_("Set the Sample Rejection workflow and the reasons"), |
612
|
|
|
render_own_label=False, |
613
|
|
|
visible={ |
614
|
|
|
'add': 'edit', |
615
|
|
|
'secondary': 'disabled', |
616
|
|
|
}, |
617
|
|
|
), |
618
|
|
|
), |
619
|
|
|
|
620
|
|
|
ReferenceField( |
621
|
|
|
'Specification', |
622
|
|
|
required=0, |
623
|
|
|
allowed_types='AnalysisSpec', |
624
|
|
|
relationship='AnalysisRequestAnalysisSpec', |
625
|
|
|
mode="rw", |
626
|
|
|
read_permission=View, |
627
|
|
|
write_permission=FieldEditSpecification, |
628
|
|
|
widget=ReferenceWidget( |
629
|
|
|
label=_("Analysis Specification"), |
630
|
|
|
description=_("Choose default Sample specification values"), |
631
|
|
|
size=20, |
632
|
|
|
render_own_label=True, |
633
|
|
|
visible={ |
634
|
|
|
'add': 'edit', |
635
|
|
|
}, |
636
|
|
|
catalog_name='bika_setup_catalog', |
637
|
|
|
colModel=[ |
638
|
|
|
{'columnName': 'contextual_title', |
639
|
|
|
'width': '30', |
640
|
|
|
'label': _('Title'), |
641
|
|
|
'align': 'left'}, |
642
|
|
|
{'columnName': 'SampleTypeTitle', |
643
|
|
|
'width': '70', |
644
|
|
|
'label': _('SampleType'), |
645
|
|
|
'align': 'left'}, |
646
|
|
|
# UID is required in colModel |
647
|
|
|
{'columnName': 'UID', 'hidden': True}, |
648
|
|
|
], |
649
|
|
|
showOn=True, |
650
|
|
|
), |
651
|
|
|
), |
652
|
|
|
|
653
|
|
|
# see setResultsRange below. |
654
|
|
|
RecordsField( |
655
|
|
|
'ResultsRange', |
656
|
|
|
required=0, |
657
|
|
|
type='resultsrange', |
658
|
|
|
subfields=('keyword', 'min', 'max', 'warn_min', 'warn_max', 'hidemin', |
659
|
|
|
'hidemax', 'rangecomment', 'min_operator', 'max_operator'), |
660
|
|
|
widget=ComputedWidget(visible=False), |
661
|
|
|
), |
662
|
|
|
|
663
|
|
|
ReferenceField( |
664
|
|
|
'PublicationSpecification', |
665
|
|
|
required=0, |
666
|
|
|
allowed_types='AnalysisSpec', |
667
|
|
|
relationship='AnalysisRequestPublicationSpec', |
668
|
|
|
mode="rw", |
669
|
|
|
read_permission=View, |
670
|
|
|
write_permission=FieldEditPublicationSpecifications, |
671
|
|
|
widget=ReferenceWidget( |
672
|
|
|
label=_("Publication Specification"), |
673
|
|
|
description=_( |
674
|
|
|
"Set the specification to be used before publishing a Sample."), |
675
|
|
|
size=20, |
676
|
|
|
render_own_label=True, |
677
|
|
|
visible={ |
678
|
|
|
"add": "invisible", |
679
|
|
|
'secondary': 'disabled', |
680
|
|
|
}, |
681
|
|
|
catalog_name='bika_setup_catalog', |
682
|
|
|
base_query={'is_active': True}, |
683
|
|
|
showOn=True, |
684
|
|
|
), |
685
|
|
|
), |
686
|
|
|
|
687
|
|
|
# Sample field |
688
|
|
|
UIDReferenceField( |
689
|
|
|
'SamplePoint', |
690
|
|
|
allowed_types='SamplePoint', |
691
|
|
|
mode="rw", |
692
|
|
|
read_permission=View, |
693
|
|
|
write_permission=FieldEditSamplePoint, |
694
|
|
|
widget=ReferenceWidget( |
695
|
|
|
label=_("Sample Point"), |
696
|
|
|
description=_("Location where sample was taken"), |
697
|
|
|
size=20, |
698
|
|
|
render_own_label=True, |
699
|
|
|
visible={ |
700
|
|
|
'add': 'edit', |
701
|
|
|
'secondary': 'disabled', |
702
|
|
|
}, |
703
|
|
|
catalog_name='bika_setup_catalog', |
704
|
|
|
base_query={'is_active': True}, |
705
|
|
|
showOn=True, |
706
|
|
|
), |
707
|
|
|
), |
708
|
|
|
|
709
|
|
|
UIDReferenceField( |
710
|
|
|
'StorageLocation', |
711
|
|
|
allowed_types='StorageLocation', |
712
|
|
|
mode="rw", |
713
|
|
|
read_permission=View, |
714
|
|
|
write_permission=FieldEditStorageLocation, |
715
|
|
|
widget=ReferenceWidget( |
716
|
|
|
label=_("Storage Location"), |
717
|
|
|
description=_("Location where sample is kept"), |
718
|
|
|
size=20, |
719
|
|
|
render_own_label=True, |
720
|
|
|
visible={ |
721
|
|
|
'add': 'edit', |
722
|
|
|
'secondary': 'disabled', |
723
|
|
|
}, |
724
|
|
|
catalog_name='bika_setup_catalog', |
725
|
|
|
base_query={'is_active': True}, |
726
|
|
|
showOn=True, |
727
|
|
|
), |
728
|
|
|
), |
729
|
|
|
|
730
|
|
|
StringField( |
731
|
|
|
'ClientOrderNumber', |
732
|
|
|
mode="rw", |
733
|
|
|
read_permission=View, |
734
|
|
|
write_permission=FieldEditClientOrderNumber, |
735
|
|
|
widget=StringWidget( |
736
|
|
|
label=_("Client Order Number"), |
737
|
|
|
description=_("The client side order number for this request"), |
738
|
|
|
size=20, |
739
|
|
|
render_own_label=True, |
740
|
|
|
visible={ |
741
|
|
|
'add': 'edit', |
742
|
|
|
'secondary': 'disabled', |
743
|
|
|
}, |
744
|
|
|
), |
745
|
|
|
), |
746
|
|
|
|
747
|
|
|
StringField( |
748
|
|
|
'ClientReference', |
749
|
|
|
mode="rw", |
750
|
|
|
read_permission=View, |
751
|
|
|
write_permission=FieldEditClientReference, |
752
|
|
|
widget=StringWidget( |
753
|
|
|
label=_("Client Reference"), |
754
|
|
|
description=_("The client side reference for this request"), |
755
|
|
|
render_own_label=True, |
756
|
|
|
visible={ |
757
|
|
|
'add': 'edit', |
758
|
|
|
'secondary': 'disabled', |
759
|
|
|
}, |
760
|
|
|
), |
761
|
|
|
), |
762
|
|
|
|
763
|
|
|
StringField( |
764
|
|
|
'ClientSampleID', |
765
|
|
|
mode="rw", |
766
|
|
|
read_permission=View, |
767
|
|
|
write_permission=FieldEditClientSampleID, |
768
|
|
|
widget=StringWidget( |
769
|
|
|
label=_("Client Sample ID"), |
770
|
|
|
description=_("The client side identifier of the sample"), |
771
|
|
|
size=20, |
772
|
|
|
render_own_label=True, |
773
|
|
|
visible={ |
774
|
|
|
'add': 'edit', |
775
|
|
|
'secondary': 'disabled', |
776
|
|
|
}, |
777
|
|
|
), |
778
|
|
|
), |
779
|
|
|
|
780
|
|
|
UIDReferenceField( |
781
|
|
|
'SamplingDeviation', |
782
|
|
|
allowed_types='SamplingDeviation', |
783
|
|
|
mode="rw", |
784
|
|
|
read_permission=View, |
785
|
|
|
write_permission=FieldEditSamplingDeviation, |
786
|
|
|
widget=ReferenceWidget( |
787
|
|
|
label=_("Sampling Deviation"), |
788
|
|
|
description=_("Deviation between the sample and how it " |
789
|
|
|
"was sampled"), |
790
|
|
|
size=20, |
791
|
|
|
render_own_label=True, |
792
|
|
|
visible={ |
793
|
|
|
'add': 'edit', |
794
|
|
|
'secondary': 'disabled', |
795
|
|
|
}, |
796
|
|
|
catalog_name='bika_setup_catalog', |
797
|
|
|
base_query={'is_active': True}, |
798
|
|
|
showOn=True, |
799
|
|
|
), |
800
|
|
|
), |
801
|
|
|
|
802
|
|
|
UIDReferenceField( |
803
|
|
|
'SampleCondition', |
804
|
|
|
allowed_types='SampleCondition', |
805
|
|
|
mode="rw", |
806
|
|
|
read_permission=View, |
807
|
|
|
write_permission=FieldEditSampleCondition, |
808
|
|
|
widget=ReferenceWidget( |
809
|
|
|
label=_("Sample condition"), |
810
|
|
|
description=_("The condition of the sample"), |
811
|
|
|
size=20, |
812
|
|
|
render_own_label=True, |
813
|
|
|
visible={ |
814
|
|
|
'add': 'edit', |
815
|
|
|
'secondary': 'disabled', |
816
|
|
|
}, |
817
|
|
|
catalog_name='bika_setup_catalog', |
818
|
|
|
base_query={'is_active': True}, |
819
|
|
|
showOn=True, |
820
|
|
|
), |
821
|
|
|
), |
822
|
|
|
|
823
|
|
|
StringField( |
824
|
|
|
'Priority', |
825
|
|
|
default='3', |
826
|
|
|
vocabulary=PRIORITIES, |
827
|
|
|
mode='rw', |
828
|
|
|
read_permission=View, |
829
|
|
|
write_permission=FieldEditPriority, |
830
|
|
|
widget=PrioritySelectionWidget( |
831
|
|
|
label=_('Priority'), |
832
|
|
|
format='select', |
833
|
|
|
visible={ |
834
|
|
|
'add': 'edit', |
835
|
|
|
}, |
836
|
|
|
), |
837
|
|
|
), |
838
|
|
|
StringField( |
839
|
|
|
'EnvironmentalConditions', |
840
|
|
|
mode="rw", |
841
|
|
|
read_permission=View, |
842
|
|
|
write_permission=FieldEditEnvironmentalConditions, |
843
|
|
|
widget=StringWidget( |
844
|
|
|
label=_("Environmental conditions"), |
845
|
|
|
description=_("The environmental condition during sampling"), |
846
|
|
|
visible={ |
847
|
|
|
'add': 'edit', |
848
|
|
|
'header_table': 'prominent', |
849
|
|
|
}, |
850
|
|
|
render_own_label=True, |
851
|
|
|
size=20, |
852
|
|
|
), |
853
|
|
|
), |
854
|
|
|
|
855
|
|
|
# TODO Remove - Is this still necessary? |
856
|
|
|
ReferenceField( |
857
|
|
|
'DefaultContainerType', |
858
|
|
|
allowed_types=('ContainerType',), |
859
|
|
|
relationship='AnalysisRequestContainerType', |
860
|
|
|
referenceClass=HoldingReference, |
861
|
|
|
mode="rw", |
862
|
|
|
read_permission=View, |
863
|
|
|
write_permission=ModifyPortalContent, |
864
|
|
|
widget=ReferenceWidget( |
865
|
|
|
label=_("Default Container"), |
866
|
|
|
description=_("Default container for new sample partitions"), |
867
|
|
|
size=20, |
868
|
|
|
render_own_label=True, |
869
|
|
|
visible=False, |
870
|
|
|
catalog_name='bika_setup_catalog', |
871
|
|
|
base_query={'is_active': True}, |
872
|
|
|
showOn=True, |
873
|
|
|
), |
874
|
|
|
), |
875
|
|
|
|
876
|
|
|
BooleanField( |
877
|
|
|
'Composite', |
878
|
|
|
default=False, |
879
|
|
|
mode="rw", |
880
|
|
|
read_permission=View, |
881
|
|
|
write_permission=FieldEditComposite, |
882
|
|
|
widget=BooleanWidget( |
883
|
|
|
label=_("Composite"), |
884
|
|
|
render_own_label=True, |
885
|
|
|
visible={ |
886
|
|
|
'add': 'edit', |
887
|
|
|
'secondary': 'disabled', |
888
|
|
|
}, |
889
|
|
|
), |
890
|
|
|
), |
891
|
|
|
|
892
|
|
|
BooleanField( |
893
|
|
|
'InvoiceExclude', |
894
|
|
|
default=False, |
895
|
|
|
mode="rw", |
896
|
|
|
read_permission=View, |
897
|
|
|
write_permission=FieldEditInvoiceExclude, |
898
|
|
|
widget=BooleanWidget( |
899
|
|
|
label=_("Invoice Exclude"), |
900
|
|
|
description=_("Should the analyses be excluded from the invoice?"), |
901
|
|
|
render_own_label=True, |
902
|
|
|
visible={ |
903
|
|
|
'add': 'edit', |
904
|
|
|
'header_table': 'visible', |
905
|
|
|
}, |
906
|
|
|
), |
907
|
|
|
), |
908
|
|
|
|
909
|
|
|
# TODO Review permission for this field Analyses |
910
|
|
|
ARAnalysesField( |
911
|
|
|
'Analyses', |
912
|
|
|
required=1, |
913
|
|
|
mode="rw", |
914
|
|
|
read_permission=View, |
915
|
|
|
write_permission=ModifyPortalContent, |
916
|
|
|
widget=ComputedWidget( |
917
|
|
|
visible={ |
918
|
|
|
'edit': 'invisible', |
919
|
|
|
'view': 'invisible', |
920
|
|
|
'sample_registered': { |
921
|
|
|
'view': 'visible', 'edit': 'visible', 'add': 'invisible'}, |
922
|
|
|
} |
923
|
|
|
), |
924
|
|
|
), |
925
|
|
|
|
926
|
|
|
ReferenceField( |
927
|
|
|
'Attachment', |
928
|
|
|
multiValued=1, |
929
|
|
|
allowed_types=('Attachment',), |
930
|
|
|
referenceClass=HoldingReference, |
931
|
|
|
relationship='AnalysisRequestAttachment', |
932
|
|
|
mode="rw", |
933
|
|
|
read_permission=View, |
934
|
|
|
write_permission=ModifyPortalContent, |
935
|
|
|
widget=ComputedWidget( |
936
|
|
|
visible={ |
937
|
|
|
'edit': 'invisible', |
938
|
|
|
'view': 'invisible', |
939
|
|
|
}, |
940
|
|
|
) |
941
|
|
|
), |
942
|
|
|
|
943
|
|
|
# This is a virtual field and handled only by AR Add View to allow multi |
944
|
|
|
# attachment upload in AR Add. It should never contain an own value! |
945
|
|
|
FileField( |
946
|
|
|
'_ARAttachment', |
947
|
|
|
widget=FileWidget( |
948
|
|
|
label=_("Attachment"), |
949
|
|
|
description=_("Add one or more attachments to describe the " |
950
|
|
|
"sample in this sample, or to specify " |
951
|
|
|
"your request."), |
952
|
|
|
render_own_label=True, |
953
|
|
|
visible={ |
954
|
|
|
'view': 'invisible', |
955
|
|
|
'add': 'edit', |
956
|
|
|
'header_table': 'invisible', |
957
|
|
|
}, |
958
|
|
|
) |
959
|
|
|
), |
960
|
|
|
|
961
|
|
|
ReferenceField( |
962
|
|
|
'Invoice', |
963
|
|
|
vocabulary_display_path_bound=sys.maxsize, |
964
|
|
|
allowed_types=('Invoice',), |
965
|
|
|
referenceClass=HoldingReference, |
966
|
|
|
relationship='AnalysisRequestInvoice', |
967
|
|
|
mode="rw", |
968
|
|
|
read_permission=View, |
969
|
|
|
write_permission=ModifyPortalContent, |
970
|
|
|
widget=ComputedWidget( |
971
|
|
|
visible={ |
972
|
|
|
'edit': 'invisible', |
973
|
|
|
'view': 'visible', |
974
|
|
|
}, |
975
|
|
|
) |
976
|
|
|
), |
977
|
|
|
|
978
|
|
|
DateTimeField( |
979
|
|
|
'DateReceived', |
980
|
|
|
mode="rw", |
981
|
|
|
read_permission=View, |
982
|
|
|
write_permission=FieldEditDateReceived, |
983
|
|
|
widget=DateTimeWidget( |
984
|
|
|
label=_("Date Sample Received"), |
985
|
|
|
show_time=True, |
986
|
|
|
datepicker_nofuture=1, |
987
|
|
|
description=_("The date when the sample was received"), |
988
|
|
|
render_own_label=True, |
989
|
|
|
), |
990
|
|
|
), |
991
|
|
|
ComputedField( |
992
|
|
|
'DatePublished', |
993
|
|
|
mode="r", |
994
|
|
|
read_permission=View, |
995
|
|
|
expression="here.getDatePublished().strftime('%Y-%m-%d %H:%M %p') if here.getDatePublished() else ''", |
996
|
|
|
widget=DateTimeWidget( |
997
|
|
|
label=_("Date Published"), |
998
|
|
|
visible={ |
999
|
|
|
'edit': 'invisible', |
1000
|
|
|
'add': 'invisible', |
1001
|
|
|
'secondary': 'invisible', |
1002
|
|
|
}, |
1003
|
|
|
), |
1004
|
|
|
), |
1005
|
|
|
|
1006
|
|
|
RemarksField( |
1007
|
|
|
'Remarks', |
1008
|
|
|
searchable=True, |
1009
|
|
|
read_permission=View, |
1010
|
|
|
write_permission=FieldEditRemarks, |
1011
|
|
|
widget=RemarksWidget( |
1012
|
|
|
label=_("Remarks"), |
1013
|
|
|
description=_("Remarks and comments for this request"), |
1014
|
|
|
render_own_label=True, |
1015
|
|
|
visible={ |
1016
|
|
|
'add': 'edit', |
1017
|
|
|
'header_table': 'invisible', |
1018
|
|
|
}, |
1019
|
|
|
), |
1020
|
|
|
), |
1021
|
|
|
|
1022
|
|
|
FixedPointField( |
1023
|
|
|
'MemberDiscount', |
1024
|
|
|
default_method='getDefaultMemberDiscount', |
1025
|
|
|
mode="rw", |
1026
|
|
|
read_permission=View, |
1027
|
|
|
write_permission=FieldEditMemberDiscount, |
1028
|
|
|
widget=DecimalWidget( |
1029
|
|
|
label=_("Member discount %"), |
1030
|
|
|
description=_("Enter percentage value eg. 33.0"), |
1031
|
|
|
render_own_label=True, |
1032
|
|
|
visible={ |
1033
|
|
|
'add': 'invisible', |
1034
|
|
|
}, |
1035
|
|
|
), |
1036
|
|
|
), |
1037
|
|
|
# TODO-catalog: move all these computed fields to methods |
1038
|
|
|
ComputedField( |
1039
|
|
|
'ClientUID', |
1040
|
|
|
expression='here.aq_parent.UID()', |
1041
|
|
|
widget=ComputedWidget( |
1042
|
|
|
visible=False, |
1043
|
|
|
), |
1044
|
|
|
), |
1045
|
|
|
|
1046
|
|
|
ComputedField( |
1047
|
|
|
'SampleTypeTitle', |
1048
|
|
|
expression="here.getSampleType().Title() if here.getSampleType() " |
1049
|
|
|
"else ''", |
1050
|
|
|
widget=ComputedWidget( |
1051
|
|
|
visible=False, |
1052
|
|
|
), |
1053
|
|
|
), |
1054
|
|
|
|
1055
|
|
|
ComputedField( |
1056
|
|
|
'SamplePointTitle', |
1057
|
|
|
expression="here.getSamplePoint().Title() if here.getSamplePoint() " |
1058
|
|
|
"else ''", |
1059
|
|
|
widget=ComputedWidget( |
1060
|
|
|
visible=False, |
1061
|
|
|
), |
1062
|
|
|
), |
1063
|
|
|
|
1064
|
|
|
ComputedField( |
1065
|
|
|
'ContactUID', |
1066
|
|
|
expression="here.getContact() and here.getContact().UID() or ''", |
1067
|
|
|
widget=ComputedWidget( |
1068
|
|
|
visible=False, |
1069
|
|
|
), |
1070
|
|
|
), |
1071
|
|
|
|
1072
|
|
|
ComputedField( |
1073
|
|
|
'ProfilesUID', |
1074
|
|
|
expression="[p.UID() for p in here.getProfiles()] " \ |
1075
|
|
|
"if here.getProfiles() else []", |
1076
|
|
|
widget=ComputedWidget( |
1077
|
|
|
visible=False, |
1078
|
|
|
), |
1079
|
|
|
), |
1080
|
|
|
|
1081
|
|
|
ComputedField( |
1082
|
|
|
'Invoiced', |
1083
|
|
|
expression='here.getInvoice() and True or False', |
1084
|
|
|
default=False, |
1085
|
|
|
widget=ComputedWidget( |
1086
|
|
|
visible=False, |
1087
|
|
|
), |
1088
|
|
|
), |
1089
|
|
|
ComputedField( |
1090
|
|
|
'ReceivedBy', |
1091
|
|
|
expression='here.getReceivedBy()', |
1092
|
|
|
default='', |
1093
|
|
|
widget=ComputedWidget(visible=False,), |
1094
|
|
|
), |
1095
|
|
|
ComputedField( |
1096
|
|
|
'CreatorFullName', |
1097
|
|
|
expression="here._getCreatorFullName()", |
1098
|
|
|
widget=ComputedWidget(visible=False), |
1099
|
|
|
), |
1100
|
|
|
ComputedField( |
1101
|
|
|
'CreatorEmail', |
1102
|
|
|
expression="here._getCreatorEmail()", |
1103
|
|
|
widget=ComputedWidget(visible=False), |
1104
|
|
|
), |
1105
|
|
|
ComputedField( |
1106
|
|
|
'SamplingRoundUID', |
1107
|
|
|
expression="here.getSamplingRound().UID() " \ |
1108
|
|
|
"if here.getSamplingRound() else ''", |
1109
|
|
|
widget=ComputedWidget(visible=False), |
1110
|
|
|
), |
1111
|
|
|
ComputedField( |
1112
|
|
|
'SamplerFullName', |
1113
|
|
|
expression="here._getSamplerFullName()", |
1114
|
|
|
widget=ComputedWidget(visible=False), |
1115
|
|
|
), |
1116
|
|
|
ComputedField( |
1117
|
|
|
'SamplerEmail', |
1118
|
|
|
expression="here._getSamplerEmail()", |
1119
|
|
|
widget=ComputedWidget(visible=False), |
1120
|
|
|
), |
1121
|
|
|
ComputedField( |
1122
|
|
|
'BatchID', |
1123
|
|
|
expression="here.getBatch().getId() if here.getBatch() else ''", |
1124
|
|
|
widget=ComputedWidget(visible=False), |
1125
|
|
|
), |
1126
|
|
|
ComputedField( |
1127
|
|
|
'BatchURL', |
1128
|
|
|
expression="here.getBatch().absolute_url_path() " \ |
1129
|
|
|
"if here.getBatch() else ''", |
1130
|
|
|
widget=ComputedWidget(visible=False), |
1131
|
|
|
), |
1132
|
|
|
ComputedField( |
1133
|
|
|
'ClientUID', |
1134
|
|
|
expression="here.getClient().UID() if here.getClient() else ''", |
1135
|
|
|
widget=ComputedWidget(visible=False), |
1136
|
|
|
), |
1137
|
|
|
ComputedField( |
1138
|
|
|
'ClientID', |
1139
|
|
|
expression="here.getClient().getClientID() if here.getClient() else ''", |
1140
|
|
|
widget=ComputedWidget(visible=False), |
1141
|
|
|
), |
1142
|
|
|
ComputedField( |
1143
|
|
|
'ClientTitle', |
1144
|
|
|
expression="here.getClient().Title() if here.getClient() else ''", |
1145
|
|
|
widget=ComputedWidget(visible=False), |
1146
|
|
|
), |
1147
|
|
|
ComputedField( |
1148
|
|
|
'ClientURL', |
1149
|
|
|
expression="here.getClient().absolute_url_path() " \ |
1150
|
|
|
"if here.getClient() else ''", |
1151
|
|
|
widget=ComputedWidget(visible=False), |
1152
|
|
|
), |
1153
|
|
|
ComputedField( |
1154
|
|
|
'ContactUsername', |
1155
|
|
|
expression="here.getContact().getUsername() " \ |
1156
|
|
|
"if here.getContact() else ''", |
1157
|
|
|
widget=ComputedWidget(visible=False), |
1158
|
|
|
), |
1159
|
|
|
ComputedField( |
1160
|
|
|
'ContactFullName', |
1161
|
|
|
expression="here.getContact().getFullname() " \ |
1162
|
|
|
"if here.getContact() else ''", |
1163
|
|
|
widget=ComputedWidget(visible=False), |
1164
|
|
|
), |
1165
|
|
|
ComputedField( |
1166
|
|
|
'ContactEmail', |
1167
|
|
|
expression="here.getContact().getEmailAddress() " \ |
1168
|
|
|
"if here.getContact() else ''", |
1169
|
|
|
widget=ComputedWidget(visible=False), |
1170
|
|
|
), |
1171
|
|
|
ComputedField( |
1172
|
|
|
'SampleTypeUID', |
1173
|
|
|
expression="here.getSampleType().UID() " \ |
1174
|
|
|
"if here.getSampleType() else ''", |
1175
|
|
|
widget=ComputedWidget(visible=False), |
1176
|
|
|
), |
1177
|
|
|
ComputedField( |
1178
|
|
|
'SamplePointUID', |
1179
|
|
|
expression="here.getSamplePoint().UID() " \ |
1180
|
|
|
"if here.getSamplePoint() else ''", |
1181
|
|
|
widget=ComputedWidget(visible=False), |
1182
|
|
|
), |
1183
|
|
|
ComputedField( |
1184
|
|
|
'StorageLocationUID', |
1185
|
|
|
expression="here.getStorageLocation().UID() " \ |
1186
|
|
|
"if here.getStorageLocation() else ''", |
1187
|
|
|
widget=ComputedWidget(visible=False), |
1188
|
|
|
), |
1189
|
|
|
ComputedField( |
1190
|
|
|
'ProfilesURL', |
1191
|
|
|
expression="[p.absolute_url_path() for p in here.getProfiles()] " \ |
1192
|
|
|
"if here.getProfiles() else []", |
1193
|
|
|
widget=ComputedWidget(visible=False), |
1194
|
|
|
), |
1195
|
|
|
ComputedField( |
1196
|
|
|
'ProfilesTitle', |
1197
|
|
|
expression="[p.Title() for p in here.getProfiles()] " \ |
1198
|
|
|
"if here.getProfiles() else []", |
1199
|
|
|
widget=ComputedWidget(visible=False), |
1200
|
|
|
), |
1201
|
|
|
ComputedField( |
1202
|
|
|
'ProfilesTitleStr', |
1203
|
|
|
expression="', '.join([p.Title() for p in here.getProfiles()]) " \ |
1204
|
|
|
"if here.getProfiles() else ''", |
1205
|
|
|
widget=ComputedWidget(visible=False), |
1206
|
|
|
), |
1207
|
|
|
ComputedField( |
1208
|
|
|
'TemplateUID', |
1209
|
|
|
expression="here.getTemplate().UID() if here.getTemplate() else ''", |
1210
|
|
|
widget=ComputedWidget(visible=False), |
1211
|
|
|
), |
1212
|
|
|
ComputedField( |
1213
|
|
|
'TemplateURL', |
1214
|
|
|
expression="here.getTemplate().absolute_url_path() " \ |
1215
|
|
|
"if here.getTemplate() else ''", |
1216
|
|
|
widget=ComputedWidget(visible=False), |
1217
|
|
|
), |
1218
|
|
|
ComputedField( |
1219
|
|
|
'TemplateTitle', |
1220
|
|
|
expression="here.getTemplate().Title() if here.getTemplate() else ''", |
1221
|
|
|
widget=ComputedWidget(visible=False), |
1222
|
|
|
), |
1223
|
|
|
|
1224
|
|
|
ReferenceField( |
1225
|
|
|
'ParentAnalysisRequest', |
1226
|
|
|
allowed_types=('AnalysisRequest',), |
1227
|
|
|
relationship='AnalysisRequestParentAnalysisRequest', |
1228
|
|
|
referenceClass=HoldingReference, |
1229
|
|
|
mode="rw", |
1230
|
|
|
read_permission=View, |
1231
|
|
|
write_permission=ModifyPortalContent, |
1232
|
|
|
widget=ReferenceWidget( |
1233
|
|
|
visible=False, |
1234
|
|
|
), |
1235
|
|
|
), |
1236
|
|
|
|
1237
|
|
|
# The Analysis Request the current Analysis Request comes from because of |
1238
|
|
|
# an invalidation of the former |
1239
|
|
|
ReferenceField( |
1240
|
|
|
'Invalidated', |
1241
|
|
|
allowed_types=('AnalysisRequest',), |
1242
|
|
|
relationship='AnalysisRequestRetracted', |
1243
|
|
|
referenceClass=HoldingReference, |
1244
|
|
|
mode="rw", |
1245
|
|
|
read_permission=View, |
1246
|
|
|
write_permission=ModifyPortalContent, |
1247
|
|
|
widget=ReferenceWidget( |
1248
|
|
|
visible=False, |
1249
|
|
|
), |
1250
|
|
|
), |
1251
|
|
|
|
1252
|
|
|
# The Analysis Request that was automatically generated due to the |
1253
|
|
|
# invalidation of the current Analysis Request |
1254
|
|
|
ComputedField( |
1255
|
|
|
'Retest', |
1256
|
|
|
expression="here.get_retest()", |
1257
|
|
|
widget=ComputedWidget(visible=False) |
1258
|
|
|
), |
1259
|
|
|
|
1260
|
|
|
# For comments or results interpretation |
1261
|
|
|
# Old one, to be removed because of the incorporation of |
1262
|
|
|
# ResultsInterpretationDepts (due to LIMS-1628) |
1263
|
|
|
TextField( |
1264
|
|
|
'ResultsInterpretation', |
1265
|
|
|
mode="rw", |
1266
|
|
|
default_content_type='text/html', |
1267
|
|
|
# Input content type for the textfield |
1268
|
|
|
default_output_type='text/x-html-safe', |
1269
|
|
|
# getResultsInterpretation returns a str with html tags |
1270
|
|
|
# to conserve the txt format in the report. |
1271
|
|
|
read_permission=View, |
1272
|
|
|
write_permission=FieldEditResultsInterpretation, |
1273
|
|
|
widget=RichWidget( |
1274
|
|
|
description=_("Comments or results interpretation"), |
1275
|
|
|
label=_("Results Interpretation"), |
1276
|
|
|
size=10, |
1277
|
|
|
allow_file_upload=False, |
1278
|
|
|
default_mime_type='text/x-rst', |
1279
|
|
|
output_mime_type='text/x-html', |
1280
|
|
|
rows=3, |
1281
|
|
|
visible=False), |
1282
|
|
|
), |
1283
|
|
|
|
1284
|
|
|
RecordsField( |
1285
|
|
|
'ResultsInterpretationDepts', |
1286
|
|
|
read_permission=View, |
1287
|
|
|
write_permission=FieldEditResultsInterpretation, |
1288
|
|
|
subfields=('uid', 'richtext'), |
1289
|
|
|
subfield_labels={ |
1290
|
|
|
'uid': _('Department'), |
1291
|
|
|
'richtext': _('Results Interpretation')}, |
1292
|
|
|
widget=RichWidget(visible=False), |
1293
|
|
|
), |
1294
|
|
|
# Custom settings for the assigned analysis services |
1295
|
|
|
# https://jira.bikalabs.com/browse/LIMS-1324 |
1296
|
|
|
# Fields: |
1297
|
|
|
# - uid: Analysis Service UID |
1298
|
|
|
# - hidden: True/False. Hide/Display in results reports |
1299
|
|
|
RecordsField('AnalysisServicesSettings', |
1300
|
|
|
required=0, |
1301
|
|
|
subfields=('uid', 'hidden',), |
1302
|
|
|
widget=ComputedWidget(visible=False), |
1303
|
|
|
), |
1304
|
|
|
StringField( |
1305
|
|
|
'Printed', |
1306
|
|
|
mode="rw", |
1307
|
|
|
read_permission=View, |
1308
|
|
|
widget=StringWidget( |
1309
|
|
|
label=_("Printed"), |
1310
|
|
|
description=_("Indicates if the last SampleReport is printed,"), |
1311
|
|
|
visible=False, |
1312
|
|
|
), |
1313
|
|
|
), |
1314
|
|
|
) |
1315
|
|
|
) |
1316
|
|
|
|
1317
|
|
|
|
1318
|
|
|
# Some schema rearrangement |
1319
|
|
|
schema['title'].required = False |
1320
|
|
|
schema['id'].widget.visible = False |
1321
|
|
|
schema['title'].widget.visible = False |
1322
|
|
|
schema.moveField('Client', before='Contact') |
1323
|
|
|
schema.moveField('ResultsInterpretation', pos='bottom') |
1324
|
|
|
schema.moveField('ResultsInterpretationDepts', pos='bottom') |
1325
|
|
|
schema.moveField("PrimaryAnalysisRequest", before="Client") |
1326
|
|
|
|
1327
|
|
|
|
1328
|
|
|
class AnalysisRequest(BaseFolder): |
1329
|
|
|
implements(IAnalysisRequest, ICancellable) |
1330
|
|
|
security = ClassSecurityInfo() |
1331
|
|
|
displayContentsTab = False |
1332
|
|
|
schema = schema |
|
|
|
|
1333
|
|
|
|
1334
|
|
|
_at_rename_after_creation = True |
1335
|
|
|
|
1336
|
|
|
def _renameAfterCreation(self, check_auto_id=False): |
1337
|
|
|
from bika.lims.idserver import renameAfterCreation |
1338
|
|
|
renameAfterCreation(self) |
1339
|
|
|
|
1340
|
|
|
def _getCatalogTool(self): |
1341
|
|
|
from bika.lims.catalog import getCatalog |
1342
|
|
|
return getCatalog(self) |
1343
|
|
|
|
1344
|
|
|
def Title(self): |
1345
|
|
|
""" Return the Request ID as title """ |
1346
|
|
|
return self.getId() |
1347
|
|
|
|
1348
|
|
|
def sortable_title(self): |
1349
|
|
|
""" |
1350
|
|
|
Some lists expects this index |
1351
|
|
|
""" |
1352
|
|
|
return self.getId() |
1353
|
|
|
|
1354
|
|
|
def Description(self): |
1355
|
|
|
"""Returns searchable data as Description""" |
1356
|
|
|
descr = " ".join((self.getId(), self.aq_parent.Title())) |
1357
|
|
|
return safe_unicode(descr).encode('utf-8') |
1358
|
|
|
|
1359
|
|
|
def getClient(self): |
1360
|
|
|
if self.aq_parent.portal_type == 'Client': |
1361
|
|
|
return self.aq_parent |
1362
|
|
|
if self.aq_parent.portal_type == 'Batch': |
1363
|
|
|
return self.aq_parent.getClient() |
1364
|
|
|
return '' |
1365
|
|
|
|
1366
|
|
|
def getClientPath(self): |
1367
|
|
|
return "/".join(self.aq_parent.getPhysicalPath()) |
1368
|
|
|
|
1369
|
|
|
def getProfilesTitle(self): |
1370
|
|
|
return [profile.Title() for profile in self.getProfiles()] |
1371
|
|
|
|
1372
|
|
|
def setPublicationSpecification(self, value): |
1373
|
|
|
"""Never contains a value; this field is here for the UI." \ |
1374
|
|
|
""" |
1375
|
|
|
return value |
1376
|
|
|
|
1377
|
|
|
def getAnalysisService(self): |
1378
|
|
|
proxies = self.getAnalyses(full_objects=False) |
1379
|
|
|
value = set() |
1380
|
|
|
for proxy in proxies: |
1381
|
|
|
value.add(proxy.Title) |
1382
|
|
|
return list(value) |
1383
|
|
|
|
1384
|
|
|
def getAnalysts(self): |
1385
|
|
|
proxies = self.getAnalyses(full_objects=True) |
1386
|
|
|
value = [] |
1387
|
|
|
for proxy in proxies: |
1388
|
|
|
val = proxy.getAnalyst() |
1389
|
|
|
if val not in value: |
1390
|
|
|
value.append(val) |
1391
|
|
|
return value |
1392
|
|
|
|
1393
|
|
|
def getDistrict(self): |
1394
|
|
|
client = self.aq_parent |
1395
|
|
|
return client.getDistrict() |
1396
|
|
|
|
1397
|
|
|
def getProvince(self): |
1398
|
|
|
client = self.aq_parent |
1399
|
|
|
return client.getProvince() |
1400
|
|
|
|
1401
|
|
|
@security.public |
1402
|
|
|
def getBatch(self): |
1403
|
|
|
# The parent type may be "Batch" during ar_add. |
1404
|
|
|
# This function fills the hidden field in ar_add.pt |
1405
|
|
|
if self.aq_parent.portal_type == 'Batch': |
1406
|
|
|
return self.aq_parent |
1407
|
|
|
else: |
1408
|
|
|
return self.Schema()['Batch'].get(self) |
1409
|
|
|
|
1410
|
|
|
@security.public |
1411
|
|
|
def getBatchUID(self): |
1412
|
|
|
batch = self.getBatch() |
1413
|
|
|
if batch: |
1414
|
|
|
return batch.UID() |
1415
|
|
|
|
1416
|
|
|
@security.public |
1417
|
|
|
def setBatch(self, value=None): |
1418
|
|
|
original_value = self.Schema().getField('Batch').get(self) |
1419
|
|
|
if original_value != value: |
1420
|
|
|
self.Schema().getField('Batch').set(self, value) |
1421
|
|
|
self._reindexAnalyses(['getBatchUID'], False) |
1422
|
|
|
|
1423
|
|
|
def getDefaultMemberDiscount(self): |
1424
|
|
|
"""Compute default member discount if it applies |
1425
|
|
|
""" |
1426
|
|
|
if hasattr(self, 'getMemberDiscountApplies'): |
1427
|
|
|
if self.getMemberDiscountApplies(): |
1428
|
|
|
settings = self.bika_setup |
1429
|
|
|
return settings.getMemberDiscount() |
1430
|
|
|
else: |
1431
|
|
|
return "0.00" |
1432
|
|
|
|
1433
|
|
|
@security.public |
1434
|
|
|
def getAnalysesNum(self): |
1435
|
|
|
""" Returns an array with the number of analyses for the current AR in |
1436
|
|
|
different statuses, like follows: |
1437
|
|
|
[verified, total, not_submitted, to_be_verified] |
1438
|
|
|
""" |
1439
|
|
|
an_nums = [0, 0, 0, 0] |
1440
|
|
|
for analysis in self.getAnalyses(): |
1441
|
|
|
review_state = analysis.review_state |
1442
|
|
|
if review_state in ['retracted', 'rejected', 'cancelled']: |
1443
|
|
|
continue |
1444
|
|
|
if review_state == 'to_be_verified': |
1445
|
|
|
an_nums[3] += 1 |
1446
|
|
|
elif review_state in ['published', 'verified']: |
1447
|
|
|
an_nums[0] += 1 |
1448
|
|
|
else: |
1449
|
|
|
an_nums[2] += 1 |
1450
|
|
|
an_nums[1] += 1 |
1451
|
|
|
return an_nums |
1452
|
|
|
|
1453
|
|
|
@security.public |
1454
|
|
|
def getResponsible(self): |
1455
|
|
|
"""Return all manager info of responsible departments |
1456
|
|
|
""" |
1457
|
|
|
managers = {} |
1458
|
|
|
for department in self.getDepartments(): |
1459
|
|
|
manager = department.getManager() |
1460
|
|
|
if manager is None: |
1461
|
|
|
continue |
1462
|
|
|
manager_id = manager.getId() |
1463
|
|
|
if manager_id not in managers: |
1464
|
|
|
managers[manager_id] = {} |
1465
|
|
|
managers[manager_id]['salutation'] = safe_unicode( |
1466
|
|
|
manager.getSalutation()) |
1467
|
|
|
managers[manager_id]['name'] = safe_unicode( |
1468
|
|
|
manager.getFullname()) |
1469
|
|
|
managers[manager_id]['email'] = safe_unicode( |
1470
|
|
|
manager.getEmailAddress()) |
1471
|
|
|
managers[manager_id]['phone'] = safe_unicode( |
1472
|
|
|
manager.getBusinessPhone()) |
1473
|
|
|
managers[manager_id]['job_title'] = safe_unicode( |
1474
|
|
|
manager.getJobTitle()) |
1475
|
|
|
if manager.getSignature(): |
1476
|
|
|
managers[manager_id]['signature'] = \ |
1477
|
|
|
'{}/Signature'.format(manager.absolute_url()) |
1478
|
|
|
else: |
1479
|
|
|
managers[manager_id]['signature'] = False |
1480
|
|
|
managers[manager_id]['departments'] = '' |
1481
|
|
|
mngr_dept = managers[manager_id]['departments'] |
1482
|
|
|
if mngr_dept: |
1483
|
|
|
mngr_dept += ', ' |
1484
|
|
|
mngr_dept += safe_unicode(department.Title()) |
1485
|
|
|
managers[manager_id]['departments'] = mngr_dept |
1486
|
|
|
mngr_keys = managers.keys() |
1487
|
|
|
mngr_info = {'ids': mngr_keys, 'dict': managers} |
1488
|
|
|
|
1489
|
|
|
return mngr_info |
1490
|
|
|
|
1491
|
|
|
@security.public |
1492
|
|
|
def getManagers(self): |
1493
|
|
|
"""Return all managers of responsible departments |
1494
|
|
|
""" |
1495
|
|
|
manager_ids = [] |
1496
|
|
|
manager_list = [] |
1497
|
|
|
for department in self.getDepartments(): |
1498
|
|
|
manager = department.getManager() |
1499
|
|
|
if manager is None: |
1500
|
|
|
continue |
1501
|
|
|
manager_id = manager.getId() |
1502
|
|
|
if manager_id not in manager_ids: |
1503
|
|
|
manager_ids.append(manager_id) |
1504
|
|
|
manager_list.append(manager) |
1505
|
|
|
return manager_list |
1506
|
|
|
|
1507
|
|
|
def getDueDate(self): |
1508
|
|
|
"""Returns the earliest due date of the analyses this Analysis Request |
1509
|
|
|
contains.""" |
1510
|
|
|
due_dates = map(lambda an: an.getDueDate, self.getAnalyses()) |
1511
|
|
|
return due_dates and min(due_dates) or None |
1512
|
|
|
|
1513
|
|
|
security.declareProtected(View, 'getLate') |
1514
|
|
|
|
1515
|
|
|
def getLate(self): |
1516
|
|
|
"""Return True if there is at least one late analysis in this Request |
1517
|
|
|
""" |
1518
|
|
|
for analysis in self.getAnalyses(): |
1519
|
|
|
if analysis.review_state == "retracted": |
1520
|
|
|
continue |
1521
|
|
|
analysis_obj = api.get_object(analysis) |
1522
|
|
|
if analysis_obj.isLateAnalysis(): |
1523
|
|
|
return True |
1524
|
|
|
return False |
1525
|
|
|
|
1526
|
|
|
def getPrinted(self): |
1527
|
|
|
""" returns "0", "1" or "2" to indicate Printed state. |
1528
|
|
|
0 -> Never printed. |
1529
|
|
|
1 -> Printed after last publish |
1530
|
|
|
2 -> Printed but republished afterwards. |
1531
|
|
|
""" |
1532
|
|
|
workflow = getToolByName(self, 'portal_workflow') |
1533
|
|
|
review_state = workflow.getInfoFor(self, 'review_state', '') |
1534
|
|
|
if review_state not in ['published']: |
1535
|
|
|
return "0" |
1536
|
|
|
report_list = sorted(self.objectValues('ARReport'), |
1537
|
|
|
key=lambda report: report.getDatePublished()) |
1538
|
|
|
if not report_list: |
1539
|
|
|
return "0" |
1540
|
|
|
last_report = report_list[-1] |
1541
|
|
|
if last_report.getDatePrinted(): |
1542
|
|
|
return "1" |
1543
|
|
|
else: |
1544
|
|
|
for report in report_list: |
1545
|
|
|
if report.getDatePrinted(): |
1546
|
|
|
return "2" |
1547
|
|
|
return "0" |
1548
|
|
|
|
1549
|
|
|
@security.protected(View) |
1550
|
|
|
def getBillableItems(self): |
1551
|
|
|
"""Returns the items to be billed |
1552
|
|
|
""" |
1553
|
|
|
# Assigned profiles |
1554
|
|
|
profiles = self.getProfiles() |
1555
|
|
|
# Billable profiles which have a fixed price set |
1556
|
|
|
billable_profiles = filter( |
1557
|
|
|
lambda pr: pr.getUseAnalysisProfilePrice(), profiles) |
1558
|
|
|
# All services contained in the billable profiles |
1559
|
|
|
billable_profile_services = reduce(lambda a, b: a+b, map( |
|
|
|
|
1560
|
|
|
lambda profile: profile.getService(), billable_profiles), []) |
1561
|
|
|
# Keywords of the contained services |
1562
|
|
|
billable_service_keys = map( |
1563
|
|
|
lambda s: s.getKeyword(), set(billable_profile_services)) |
1564
|
|
|
# The billable items contain billable profiles and single selected analyses |
1565
|
|
|
billable_items = billable_profiles |
1566
|
|
|
# Get the analyses to be billed |
1567
|
|
|
exclude_rs = ["retracted", "rejected"] |
1568
|
|
|
for analysis in self.getAnalyses(is_active=True): |
1569
|
|
|
if analysis.review_state in exclude_rs: |
1570
|
|
|
continue |
1571
|
|
|
if analysis.getKeyword in billable_service_keys: |
1572
|
|
|
continue |
1573
|
|
|
billable_items.append(api.get_object(analysis)) |
1574
|
|
|
return billable_items |
1575
|
|
|
|
1576
|
|
|
@security.protected(View) |
1577
|
|
|
def getSubtotal(self): |
1578
|
|
|
"""Compute Subtotal (without member discount and without vat) |
1579
|
|
|
""" |
1580
|
|
|
return sum([Decimal(obj.getPrice()) for obj in self.getBillableItems()]) |
1581
|
|
|
|
1582
|
|
|
@security.protected(View) |
1583
|
|
|
def getSubtotalVATAmount(self): |
1584
|
|
|
"""Compute VAT amount without member discount |
1585
|
|
|
""" |
1586
|
|
|
return sum([Decimal(o.getVATAmount()) for o in self.getBillableItems()]) |
1587
|
|
|
|
1588
|
|
|
@security.protected(View) |
1589
|
|
|
def getSubtotalTotalPrice(self): |
1590
|
|
|
"""Compute the price with VAT but no member discount |
1591
|
|
|
""" |
1592
|
|
|
return self.getSubtotal() + self.getSubtotalVATAmount() |
1593
|
|
|
|
1594
|
|
|
@security.protected(View) |
1595
|
|
|
def getDiscountAmount(self): |
1596
|
|
|
"""It computes and returns the analysis service's discount amount |
1597
|
|
|
without VAT |
1598
|
|
|
""" |
1599
|
|
|
has_client_discount = self.aq_parent.getMemberDiscountApplies() |
1600
|
|
|
if has_client_discount: |
1601
|
|
|
discount = Decimal(self.getDefaultMemberDiscount()) |
1602
|
|
|
return Decimal(self.getSubtotal() * discount / 100) |
1603
|
|
|
else: |
1604
|
|
|
return 0 |
1605
|
|
|
|
1606
|
|
|
@security.protected(View) |
1607
|
|
|
def getVATAmount(self): |
1608
|
|
|
"""It computes the VAT amount from (subtotal-discount.)*VAT/100, but |
1609
|
|
|
each analysis has its own VAT! |
1610
|
|
|
|
1611
|
|
|
:returns: the analysis request VAT amount with the discount |
1612
|
|
|
""" |
1613
|
|
|
has_client_discount = self.aq_parent.getMemberDiscountApplies() |
1614
|
|
|
VATAmount = self.getSubtotalVATAmount() |
1615
|
|
|
if has_client_discount: |
1616
|
|
|
discount = Decimal(self.getDefaultMemberDiscount()) |
1617
|
|
|
return Decimal((1 - discount / 100) * VATAmount) |
1618
|
|
|
else: |
1619
|
|
|
return VATAmount |
1620
|
|
|
|
1621
|
|
|
@security.protected(View) |
1622
|
|
|
def getTotalPrice(self): |
1623
|
|
|
"""It gets the discounted price from analyses and profiles to obtain the |
1624
|
|
|
total value with the VAT and the discount applied |
1625
|
|
|
|
1626
|
|
|
:returns: analysis request's total price including VATs and discounts |
1627
|
|
|
""" |
1628
|
|
|
price = (self.getSubtotal() - self.getDiscountAmount() + |
1629
|
|
|
self.getVATAmount()) |
1630
|
|
|
return price |
1631
|
|
|
|
1632
|
|
|
getTotal = getTotalPrice |
1633
|
|
|
|
1634
|
|
|
@security.protected(ManageInvoices) |
1635
|
|
|
def createInvoice(self, pdf): |
1636
|
|
|
"""Issue invoice |
1637
|
|
|
""" |
1638
|
|
|
client = self.getClient() |
1639
|
|
|
invoice = self.getInvoice() |
1640
|
|
|
if not invoice: |
1641
|
|
|
invoice = _createObjectByType("Invoice", client, tmpID()) |
1642
|
|
|
invoice.edit( |
1643
|
|
|
AnalysisRequest=self, |
1644
|
|
|
Client=client, |
1645
|
|
|
InvoiceDate=DateTime(), |
1646
|
|
|
InvoicePDF=pdf |
1647
|
|
|
) |
1648
|
|
|
invoice.processForm() |
1649
|
|
|
self.setInvoice(invoice) |
1650
|
|
|
return invoice |
1651
|
|
|
|
1652
|
|
|
@security.public |
1653
|
|
|
def printInvoice(self, REQUEST=None, RESPONSE=None): |
1654
|
|
|
"""Print invoice |
1655
|
|
|
""" |
1656
|
|
|
invoice = self.getInvoice() |
1657
|
|
|
invoice_url = invoice.absolute_url() |
1658
|
|
|
RESPONSE.redirect('{}/invoice_print'.format(invoice_url)) |
1659
|
|
|
|
1660
|
|
|
@deprecated("Use getVerifiers instead") |
1661
|
|
|
@security.public |
1662
|
|
|
def getVerifier(self): |
1663
|
|
|
"""Returns the user that verified the whole Analysis Request. Since the |
1664
|
|
|
verification is done automatically as soon as all the analyses it |
1665
|
|
|
contains are verified, this function returns the user that verified the |
1666
|
|
|
last analysis pending. |
1667
|
|
|
""" |
1668
|
|
|
wtool = getToolByName(self, 'portal_workflow') |
1669
|
|
|
mtool = getToolByName(self, 'portal_membership') |
1670
|
|
|
|
1671
|
|
|
verifier = None |
1672
|
|
|
# noinspection PyBroadException |
1673
|
|
|
try: |
1674
|
|
|
review_history = wtool.getInfoFor(self, 'review_history') |
1675
|
|
|
except: # noqa FIXME: remove blind except! |
1676
|
|
|
return 'access denied' |
1677
|
|
|
|
1678
|
|
|
if not review_history: |
1679
|
|
|
return 'no history' |
1680
|
|
|
for items in review_history: |
1681
|
|
|
action = items.get('action') |
1682
|
|
|
if action != 'verify': |
1683
|
|
|
continue |
1684
|
|
|
actor = items.get('actor') |
1685
|
|
|
member = mtool.getMemberById(actor) |
1686
|
|
|
verifier = member.getProperty('fullname') |
1687
|
|
|
if verifier is None or verifier == '': |
1688
|
|
|
verifier = actor |
1689
|
|
|
return verifier |
1690
|
|
|
|
1691
|
|
|
@security.public |
1692
|
|
|
def getVerifiersIDs(self): |
1693
|
|
|
"""Returns the ids from users that have verified at least one analysis |
1694
|
|
|
from this Analysis Request |
1695
|
|
|
""" |
1696
|
|
|
verifiers_ids = list() |
1697
|
|
|
for brain in self.getAnalyses(): |
1698
|
|
|
verifiers_ids += brain.getVerificators |
1699
|
|
|
return list(set(verifiers_ids)) |
1700
|
|
|
|
1701
|
|
|
@security.public |
1702
|
|
|
def getVerifiers(self): |
1703
|
|
|
"""Returns the list of lab contacts that have verified at least one |
1704
|
|
|
analysis from this Analysis Request |
1705
|
|
|
""" |
1706
|
|
|
contacts = list() |
1707
|
|
|
for verifier in self.getVerifiersIDs(): |
1708
|
|
|
user = api.get_user(verifier) |
1709
|
|
|
contact = api.get_user_contact(user, ["LabContact"]) |
1710
|
|
|
if contact: |
1711
|
|
|
contacts.append(contact) |
1712
|
|
|
return contacts |
1713
|
|
|
|
1714
|
|
|
security.declarePublic('getContactUIDForUser') |
1715
|
|
|
|
1716
|
|
|
def getContactUIDForUser(self): |
1717
|
|
|
"""get the UID of the contact associated with the authenticated user |
1718
|
|
|
""" |
1719
|
|
|
mt = getToolByName(self, 'portal_membership') |
1720
|
|
|
user = mt.getAuthenticatedMember() |
1721
|
|
|
user_id = user.getUserName() |
1722
|
|
|
pc = getToolByName(self, 'portal_catalog') |
1723
|
|
|
r = pc(portal_type='Contact', |
1724
|
|
|
getUsername=user_id) |
1725
|
|
|
if len(r) == 1: |
1726
|
|
|
return r[0].UID |
1727
|
|
|
|
1728
|
|
|
security.declarePublic('current_date') |
1729
|
|
|
|
1730
|
|
|
def current_date(self): |
1731
|
|
|
"""return current date |
1732
|
|
|
""" |
1733
|
|
|
# noinspection PyCallingNonCallable |
1734
|
|
|
return DateTime() |
1735
|
|
|
|
1736
|
|
|
def getQCAnalyses(self, qctype=None, review_state=None): |
1737
|
|
|
"""return the QC analyses performed in the worksheet in which, at |
1738
|
|
|
least, one sample of this AR is present. |
1739
|
|
|
|
1740
|
|
|
Depending on qctype value, returns the analyses of: |
1741
|
|
|
|
1742
|
|
|
- 'b': all Blank Reference Samples used in related worksheet/s |
1743
|
|
|
- 'c': all Control Reference Samples used in related worksheet/s |
1744
|
|
|
- 'd': duplicates only for samples contained in this AR |
1745
|
|
|
|
1746
|
|
|
If qctype==None, returns all type of qc analyses mentioned above |
1747
|
|
|
""" |
1748
|
|
|
qcanalyses = [] |
1749
|
|
|
suids = [] |
1750
|
|
|
ans = self.getAnalyses() |
1751
|
|
|
wf = getToolByName(self, 'portal_workflow') |
1752
|
|
|
for an in ans: |
1753
|
|
|
an = an.getObject() |
1754
|
|
|
if an.getServiceUID() not in suids: |
1755
|
|
|
suids.append(an.getServiceUID()) |
1756
|
|
|
|
1757
|
|
|
def valid_dup(wan): |
1758
|
|
|
if wan.portal_type == 'ReferenceAnalysis': |
1759
|
|
|
return False |
1760
|
|
|
an_state = wf.getInfoFor(wan, 'review_state') |
1761
|
|
|
return \ |
1762
|
|
|
wan.portal_type == 'DuplicateAnalysis' \ |
1763
|
|
|
and wan.getRequestID() == self.id \ |
1764
|
|
|
and (review_state is None or an_state in review_state) |
1765
|
|
|
|
1766
|
|
|
def valid_ref(wan): |
1767
|
|
|
if wan.portal_type != 'ReferenceAnalysis': |
1768
|
|
|
return False |
1769
|
|
|
an_state = wf.getInfoFor(wan, 'review_state') |
1770
|
|
|
an_reftype = wan.getReferenceType() |
1771
|
|
|
return wan.getServiceUID() in suids \ |
1772
|
|
|
and wan not in qcanalyses \ |
1773
|
|
|
and (qctype is None or an_reftype == qctype) \ |
1774
|
|
|
and (review_state is None or an_state in review_state) |
1775
|
|
|
|
1776
|
|
|
for an in ans: |
1777
|
|
|
an = an.getObject() |
1778
|
|
|
ws = an.getWorksheet() |
1779
|
|
|
if not ws: |
1780
|
|
|
continue |
1781
|
|
|
was = ws.getAnalyses() |
1782
|
|
|
for wa in was: |
1783
|
|
|
if valid_dup(wa): |
1784
|
|
|
qcanalyses.append(wa) |
1785
|
|
|
elif valid_ref(wa): |
1786
|
|
|
qcanalyses.append(wa) |
1787
|
|
|
|
1788
|
|
|
return qcanalyses |
1789
|
|
|
|
1790
|
|
|
def isInvalid(self): |
1791
|
|
|
"""return if the Analysis Request has been invalidated |
1792
|
|
|
""" |
1793
|
|
|
workflow = getToolByName(self, 'portal_workflow') |
1794
|
|
|
return workflow.getInfoFor(self, 'review_state') == 'invalid' |
1795
|
|
|
|
1796
|
|
|
def getSamplingRoundUID(self): |
1797
|
|
|
"""Obtains the sampling round UID |
1798
|
|
|
:returns: UID |
1799
|
|
|
""" |
1800
|
|
|
sr = self.getSamplingRound() |
1801
|
|
|
if sr: |
1802
|
|
|
return sr.UID() |
1803
|
|
|
else: |
1804
|
|
|
return '' |
1805
|
|
|
|
1806
|
|
|
def getStorageLocationTitle(self): |
1807
|
|
|
""" A method for AR listing catalog metadata |
1808
|
|
|
:return: Title of Storage Location |
1809
|
|
|
""" |
1810
|
|
|
sl = self.getStorageLocation() |
1811
|
|
|
if sl: |
1812
|
|
|
return sl.Title() |
1813
|
|
|
return '' |
1814
|
|
|
|
1815
|
|
|
@security.public |
1816
|
|
|
def getResultsRange(self): |
1817
|
|
|
"""Returns the valid result ranges for the analyses this Analysis |
1818
|
|
|
Request contains. |
1819
|
|
|
|
1820
|
|
|
By default uses the result ranges defined in the Analysis Specification |
1821
|
|
|
set in "Specification" field if any. Values manually set through |
1822
|
|
|
`ResultsRange` field for any given analysis keyword have priority over |
1823
|
|
|
the result ranges defined in "Specification" field. |
1824
|
|
|
|
1825
|
|
|
:return: A list of dictionaries, where each dictionary defines the |
1826
|
|
|
result range to use for any analysis contained in this Analysis |
1827
|
|
|
Request for the keyword specified. Each dictionary has, at least, |
1828
|
|
|
the following keys: "keyword", "min", "max" |
1829
|
|
|
:rtype: dict |
1830
|
|
|
""" |
1831
|
|
|
specs_range = [] |
1832
|
|
|
specification = self.getSpecification() |
1833
|
|
|
if specification: |
1834
|
|
|
specs_range = specification.getResultsRange() |
1835
|
|
|
specs_range = specs_range and specs_range or [] |
1836
|
|
|
|
1837
|
|
|
# Override with AR's custom ranges |
1838
|
|
|
ar_range = self.Schema().getField("ResultsRange").get(self) |
1839
|
|
|
if not ar_range: |
1840
|
|
|
return specs_range |
1841
|
|
|
|
1842
|
|
|
# Remove those analysis ranges that neither min nor max are floatable |
1843
|
|
|
an_specs = [an for an in ar_range if |
1844
|
|
|
api.is_floatable(an.get('min', None)) or |
1845
|
|
|
api.is_floatable(an.get('max', None))] |
1846
|
|
|
# Want to know which are the analyses that needs to be overriden |
1847
|
|
|
keywords = map(lambda item: item.get('keyword'), an_specs) |
1848
|
|
|
# Get rid of those analyses to be overriden |
1849
|
|
|
out_specs = [sp for sp in specs_range if sp['keyword'] not in keywords] |
1850
|
|
|
# Add manually set ranges |
1851
|
|
|
out_specs.extend(an_specs) |
1852
|
|
|
return map(lambda spec: ResultsRangeDict(spec), out_specs) |
1853
|
|
|
|
1854
|
|
|
def getDatePublished(self): |
1855
|
|
|
""" |
1856
|
|
|
Returns the transition date from the Analysis Request object |
1857
|
|
|
""" |
1858
|
|
|
return getTransitionDate(self, 'publish', return_as_datetime=True) |
1859
|
|
|
|
1860
|
|
|
@security.public |
1861
|
|
|
def getSamplingDeviationTitle(self): |
1862
|
|
|
""" |
1863
|
|
|
It works as a metacolumn. |
1864
|
|
|
""" |
1865
|
|
|
sd = self.getSamplingDeviation() |
1866
|
|
|
if sd: |
1867
|
|
|
return sd.Title() |
1868
|
|
|
return '' |
1869
|
|
|
|
1870
|
|
|
@security.public |
1871
|
|
|
def getHazardous(self): |
1872
|
|
|
""" |
1873
|
|
|
It works as a metacolumn. |
1874
|
|
|
""" |
1875
|
|
|
sample_type = self.getSampleType() |
1876
|
|
|
if sample_type: |
1877
|
|
|
return sample_type.getHazardous() |
1878
|
|
|
return False |
1879
|
|
|
|
1880
|
|
|
@security.public |
1881
|
|
|
def getContactURL(self): |
1882
|
|
|
""" |
1883
|
|
|
It works as a metacolumn. |
1884
|
|
|
""" |
1885
|
|
|
contact = self.getContact() |
1886
|
|
|
if contact: |
1887
|
|
|
return contact.absolute_url_path() |
1888
|
|
|
return '' |
1889
|
|
|
|
1890
|
|
|
@security.public |
1891
|
|
|
def getSamplingWorkflowEnabled(self): |
1892
|
|
|
"""Returns True if the sample of this Analysis Request has to be |
1893
|
|
|
collected by the laboratory personnel |
1894
|
|
|
""" |
1895
|
|
|
template = self.getTemplate() |
1896
|
|
|
if template: |
1897
|
|
|
return template.getSamplingRequired() |
1898
|
|
|
return self.bika_setup.getSamplingWorkflowEnabled() |
1899
|
|
|
|
1900
|
|
|
def getSamplers(self): |
1901
|
|
|
return getUsers(self, ['Sampler', ]) |
1902
|
|
|
|
1903
|
|
|
def getPreservers(self): |
1904
|
|
|
return getUsers(self, ['Preserver', 'Sampler']) |
1905
|
|
|
|
1906
|
|
|
def getDepartments(self): |
1907
|
|
|
"""Returns a list of the departments assigned to the Analyses |
1908
|
|
|
from this Analysis Request |
1909
|
|
|
""" |
1910
|
|
|
departments = list() |
1911
|
|
|
for analysis in self.getAnalyses(full_objects=True): |
1912
|
|
|
department = analysis.getDepartment() |
1913
|
|
|
if department and department not in departments: |
1914
|
|
|
departments.append(department) |
1915
|
|
|
return departments |
1916
|
|
|
|
1917
|
|
|
def getResultsInterpretationByDepartment(self, department=None): |
1918
|
|
|
"""Returns the results interpretation for this Analysis Request |
1919
|
|
|
and department. If department not set, returns the results |
1920
|
|
|
interpretation tagged as 'General'. |
1921
|
|
|
|
1922
|
|
|
:returns: a dict with the following keys: |
1923
|
|
|
{'uid': <department_uid> or 'general', 'richtext': <text/plain>} |
1924
|
|
|
""" |
1925
|
|
|
uid = department.UID() if department else 'general' |
1926
|
|
|
rows = self.Schema()['ResultsInterpretationDepts'].get(self) |
1927
|
|
|
row = [row for row in rows if row.get('uid') == uid] |
1928
|
|
|
if len(row) > 0: |
1929
|
|
|
row = row[0] |
1930
|
|
|
elif uid == 'general' \ |
1931
|
|
|
and hasattr(self, 'getResultsInterpretation') \ |
1932
|
|
|
and self.getResultsInterpretation(): |
1933
|
|
|
row = {'uid': uid, 'richtext': self.getResultsInterpretation()} |
1934
|
|
|
else: |
1935
|
|
|
row = {'uid': uid, 'richtext': ''} |
1936
|
|
|
return row |
1937
|
|
|
|
1938
|
|
|
def getAnalysisServiceSettings(self, uid): |
1939
|
|
|
"""Returns a dictionary with the settings for the analysis service that |
1940
|
|
|
match with the uid provided. |
1941
|
|
|
|
1942
|
|
|
If there are no settings for the analysis service and |
1943
|
|
|
analysis requests: |
1944
|
|
|
|
1945
|
|
|
1. looks for settings in AR's ARTemplate. If found, returns the |
1946
|
|
|
settings for the AnalysisService set in the Template |
1947
|
|
|
2. If no settings found, looks in AR's ARProfile. If found, returns the |
1948
|
|
|
settings for the AnalysisService from the AR Profile. Otherwise, |
1949
|
|
|
returns a one entry dictionary with only the key 'uid' |
1950
|
|
|
""" |
1951
|
|
|
sets = [s for s in self.getAnalysisServicesSettings() |
1952
|
|
|
if s.get('uid', '') == uid] |
1953
|
|
|
|
1954
|
|
|
# Created by using an ARTemplate? |
1955
|
|
|
if not sets and self.getTemplate(): |
1956
|
|
|
adv = self.getTemplate().getAnalysisServiceSettings(uid) |
1957
|
|
|
sets = [adv] if 'hidden' in adv else [] |
1958
|
|
|
|
1959
|
|
|
# Created by using an AR Profile? |
1960
|
|
|
if not sets and self.getProfiles(): |
1961
|
|
|
adv = [] |
1962
|
|
|
adv += [profile.getAnalysisServiceSettings(uid) for profile in |
1963
|
|
|
self.getProfiles()] |
1964
|
|
|
sets = adv if 'hidden' in adv[0] else [] |
1965
|
|
|
|
1966
|
|
|
return sets[0] if sets else {'uid': uid} |
1967
|
|
|
|
1968
|
|
|
# TODO Sample Cleanup - Remove this function |
1969
|
|
|
def getPartitions(self): |
1970
|
|
|
"""This functions returns the partitions from the analysis request's |
1971
|
|
|
analyses. |
1972
|
|
|
|
1973
|
|
|
:returns: a list with the full partition objects |
1974
|
|
|
""" |
1975
|
|
|
partitions = [] |
1976
|
|
|
for analysis in self.getAnalyses(full_objects=True): |
1977
|
|
|
if analysis.getSamplePartition() not in partitions: |
1978
|
|
|
partitions.append(analysis.getSamplePartition()) |
1979
|
|
|
return partitions |
1980
|
|
|
|
1981
|
|
|
# TODO Sample Cleanup - Remove (Use getContainer instead) |
1982
|
|
|
def getContainers(self): |
1983
|
|
|
"""This functions returns the containers from the analysis request's |
1984
|
|
|
analyses |
1985
|
|
|
|
1986
|
|
|
:returns: a list with the full partition objects |
1987
|
|
|
""" |
1988
|
|
|
return self.getContainer() and [self.getContainer] or [] |
1989
|
|
|
|
1990
|
|
View Code Duplication |
def isAnalysisServiceHidden(self, uid): |
|
|
|
|
1991
|
|
|
"""Checks if the analysis service that match with the uid provided must |
1992
|
|
|
be hidden in results. If no hidden assignment has been set for the |
1993
|
|
|
analysis in this request, returns the visibility set to the analysis |
1994
|
|
|
itself. |
1995
|
|
|
|
1996
|
|
|
Raise a TypeError if the uid is empty or None |
1997
|
|
|
|
1998
|
|
|
Raise a ValueError if there is no hidden assignment in this request or |
1999
|
|
|
no analysis service found for this uid. |
2000
|
|
|
""" |
2001
|
|
|
if not uid: |
2002
|
|
|
raise TypeError('None type or empty uid') |
2003
|
|
|
sets = self.getAnalysisServiceSettings(uid) |
2004
|
|
|
if 'hidden' not in sets: |
2005
|
|
|
uc = getToolByName(self, 'uid_catalog') |
2006
|
|
|
serv = uc(UID=uid) |
2007
|
|
|
if serv and len(serv) == 1: |
2008
|
|
|
return serv[0].getObject().getRawHidden() |
2009
|
|
|
else: |
2010
|
|
|
raise ValueError('{} is not valid'.format(uid)) |
2011
|
|
|
return sets.get('hidden', False) |
2012
|
|
|
|
2013
|
|
|
def getRejecter(self): |
2014
|
|
|
"""If the Analysis Request has been rejected, returns the user who did the |
2015
|
|
|
rejection. If it was not rejected or the current user has not enough |
2016
|
|
|
privileges to access to this information, returns None. |
2017
|
|
|
""" |
2018
|
|
|
wtool = getToolByName(self, 'portal_workflow') |
2019
|
|
|
mtool = getToolByName(self, 'portal_membership') |
2020
|
|
|
# noinspection PyBroadException |
2021
|
|
|
try: |
2022
|
|
|
review_history = wtool.getInfoFor(self, 'review_history') |
2023
|
|
|
except: # noqa FIXME: remove blind except! |
2024
|
|
|
return None |
2025
|
|
|
for items in review_history: |
2026
|
|
|
action = items.get('action') |
2027
|
|
|
if action != 'reject': |
2028
|
|
|
continue |
2029
|
|
|
actor = items.get('actor') |
2030
|
|
|
return mtool.getMemberById(actor) |
2031
|
|
|
return None |
2032
|
|
|
|
2033
|
|
|
def getReceivedBy(self): |
2034
|
|
|
""" |
2035
|
|
|
Returns the User who received the analysis request. |
2036
|
|
|
:returns: the user id |
2037
|
|
|
""" |
2038
|
|
|
user = getTransitionUsers(self, 'receive', last_user=True) |
2039
|
|
|
return user[0] if user else '' |
2040
|
|
|
|
2041
|
|
|
def getDateVerified(self): |
2042
|
|
|
""" |
2043
|
|
|
Returns the date of verification as a DateTime object. |
2044
|
|
|
""" |
2045
|
|
|
return getTransitionDate(self, 'verify', return_as_datetime=True) |
2046
|
|
|
|
2047
|
|
|
@security.public |
2048
|
|
|
def getPrioritySortkey(self): |
2049
|
|
|
"""Returns the key that will be used to sort the current Analysis |
2050
|
|
|
Request based on both its priority and creation date. On ASC sorting, |
2051
|
|
|
the oldest item with highest priority will be displayed. |
2052
|
|
|
:return: string used for sorting |
2053
|
|
|
""" |
2054
|
|
|
priority = self.getPriority() |
2055
|
|
|
created_date = self.created().ISO8601() |
2056
|
|
|
return '%s.%s' % (priority, created_date) |
2057
|
|
|
|
2058
|
|
|
@security.public |
2059
|
|
|
def setPriority(self, value): |
2060
|
|
|
if not value: |
2061
|
|
|
value = self.Schema().getField('Priority').getDefault(self) |
2062
|
|
|
original_value = self.Schema().getField('Priority').get(self) |
2063
|
|
|
if original_value != value: |
2064
|
|
|
self.Schema().getField('Priority').set(self, value) |
2065
|
|
|
self._reindexAnalyses(['getPrioritySortkey'], True) |
2066
|
|
|
|
2067
|
|
|
@security.private |
2068
|
|
|
def _reindexAnalyses(self, idxs=None, update_metadata=False): |
2069
|
|
|
if not idxs and not update_metadata: |
2070
|
|
|
return |
2071
|
|
|
if not idxs: |
2072
|
|
|
idxs = [] |
2073
|
|
|
analyses = self.getAnalyses() |
2074
|
|
|
catalog = getToolByName(self, CATALOG_ANALYSIS_LISTING) |
2075
|
|
|
for analysis in analyses: |
2076
|
|
|
analysis_obj = analysis.getObject() |
2077
|
|
|
catalog.reindexObject(analysis_obj, idxs=idxs, update_metadata=1) |
2078
|
|
|
|
2079
|
|
|
def _getCreatorFullName(self): |
2080
|
|
|
""" |
2081
|
|
|
Returns the full name of this analysis request's creator. |
2082
|
|
|
""" |
2083
|
|
|
return user_fullname(self, self.Creator()) |
2084
|
|
|
|
2085
|
|
|
def _getCreatorEmail(self): |
2086
|
|
|
""" |
2087
|
|
|
Returns the email of this analysis request's creator. |
2088
|
|
|
""" |
2089
|
|
|
return user_email(self, self.Creator()) |
2090
|
|
|
|
2091
|
|
|
def _getSamplerFullName(self): |
2092
|
|
|
""" |
2093
|
|
|
Returns the full name's defined sampler. |
2094
|
|
|
""" |
2095
|
|
|
return user_fullname(self, self.getSampler()) |
2096
|
|
|
|
2097
|
|
|
def _getSamplerEmail(self): |
2098
|
|
|
""" |
2099
|
|
|
Returns the email of this analysis request's sampler. |
2100
|
|
|
""" |
2101
|
|
|
return user_email(self, self.Creator()) |
2102
|
|
|
|
2103
|
|
View Code Duplication |
def getObjectWorkflowStates(self): |
|
|
|
|
2104
|
|
|
""" |
2105
|
|
|
This method is used as a metacolumn. |
2106
|
|
|
Returns a dictionary with the workflow id as key and workflow state as |
2107
|
|
|
value. |
2108
|
|
|
:returns: {'review_state':'active',...} |
2109
|
|
|
""" |
2110
|
|
|
workflow = getToolByName(self, 'portal_workflow') |
2111
|
|
|
states = {} |
2112
|
|
|
for w in workflow.getWorkflowsFor(self): |
2113
|
|
|
state = w._getWorkflowStateOf(self).id |
2114
|
|
|
states[w.state_var] = state |
2115
|
|
|
return states |
2116
|
|
|
|
2117
|
|
|
def SearchableText(self): |
2118
|
|
|
""" |
2119
|
|
|
Override searchable text logic based on the requirements. |
2120
|
|
|
|
2121
|
|
|
This method constructs a text blob which contains all full-text |
2122
|
|
|
searchable text for this content item. |
2123
|
|
|
https://docs.plone.org/develop/plone/searching_and_indexing/indexing.html#full-text-searching |
2124
|
|
|
""" |
2125
|
|
|
|
2126
|
|
|
# Speed up string concatenation ops by using a buffer |
2127
|
|
|
entries = [] |
2128
|
|
|
|
2129
|
|
|
# plain text fields we index from ourself, |
2130
|
|
|
# a list of accessor methods of the class |
2131
|
|
|
plain_text_fields = ("getId", ) |
2132
|
|
|
|
2133
|
|
|
def read(acc): |
2134
|
|
|
""" |
2135
|
|
|
Call a class accessor method to give a value for certain Archetypes |
2136
|
|
|
field. |
2137
|
|
|
""" |
2138
|
|
|
try: |
2139
|
|
|
val = acc() |
2140
|
|
|
except Exception as e: |
2141
|
|
|
message = "Error getting the accessor parameter in " \ |
2142
|
|
|
"SearchableText from the Analysis Request Object " \ |
2143
|
|
|
"{}: {}".format(self.getId(), e.message) |
2144
|
|
|
logger.error(message) |
2145
|
|
|
val = "" |
2146
|
|
|
|
2147
|
|
|
if val is None: |
2148
|
|
|
val = "" |
2149
|
|
|
|
2150
|
|
|
return val |
2151
|
|
|
|
2152
|
|
|
# Concatenate plain text fields as they are |
2153
|
|
|
for f in plain_text_fields: |
2154
|
|
|
accessor = getattr(self, f) |
2155
|
|
|
value = read(accessor) |
2156
|
|
|
entries.append(value) |
2157
|
|
|
|
2158
|
|
|
# Adding HTML Fields to SearchableText can be uncommented if necessary |
2159
|
|
|
# transforms = getToolByName(self, 'portal_transforms') |
2160
|
|
|
# |
2161
|
|
|
# # Run HTML valued fields through text/plain conversion |
2162
|
|
|
# for f in html_fields: |
2163
|
|
|
# accessor = getattr(self, f) |
2164
|
|
|
# value = read(accessor) |
2165
|
|
|
# |
2166
|
|
|
# if value != "": |
2167
|
|
|
# stream = transforms.convertTo('text/plain', value, |
2168
|
|
|
# mimetype='text/html') |
2169
|
|
|
# value = stream.getData() |
2170
|
|
|
# |
2171
|
|
|
# entries.append(value) |
2172
|
|
|
|
2173
|
|
|
# Plone accessor methods assume utf-8 |
2174
|
|
|
def convertToUTF8(text): |
2175
|
|
|
if type(text) == unicode: |
2176
|
|
|
return text.encode("utf-8") |
2177
|
|
|
return text |
2178
|
|
|
|
2179
|
|
|
entries = [convertToUTF8(entry) for entry in entries] |
2180
|
|
|
|
2181
|
|
|
# Concatenate all strings to one text blob |
2182
|
|
|
return " ".join(entries) |
2183
|
|
|
|
2184
|
|
|
def getPriorityText(self): |
2185
|
|
|
""" |
2186
|
|
|
This function looks up the priority text from priorities vocab |
2187
|
|
|
:returns: the priority text or '' |
2188
|
|
|
""" |
2189
|
|
|
if self.getPriority(): |
2190
|
|
|
return PRIORITIES.getValue(self.getPriority()) |
2191
|
|
|
return '' |
2192
|
|
|
|
2193
|
|
|
def get_ARAttachment(self): |
2194
|
|
|
logger.warn("_ARAttachment is a virtual field used in AR Add. " |
2195
|
|
|
"It can not hold an own value!") |
2196
|
|
|
return None |
2197
|
|
|
|
2198
|
|
|
def set_ARAttachment(self, value): |
2199
|
|
|
logger.warn("_ARAttachment is a virtual field used in AR Add. " |
2200
|
|
|
"It can not hold an own value!") |
2201
|
|
|
return None |
2202
|
|
|
|
2203
|
|
|
def get_retest(self): |
2204
|
|
|
"""Returns the Analysis Request automatically generated because of the |
2205
|
|
|
retraction of the current analysis request |
2206
|
|
|
""" |
2207
|
|
|
relationship = "AnalysisRequestRetracted" |
2208
|
|
|
retest = self.getBackReferences(relationship=relationship) |
2209
|
|
|
if retest and len(retest) > 1: |
2210
|
|
|
logger.warn("More than one retest for {0}".format(self.getId())) |
2211
|
|
|
return retest and retest[0] or None |
2212
|
|
|
|
2213
|
|
|
def getAncestors(self, all_ancestors=True): |
2214
|
|
|
"""Returns the ancestor(s) of this Analysis Request |
2215
|
|
|
param all_ancestors: include all ancestors, not only the parent |
2216
|
|
|
""" |
2217
|
|
|
parent = self.getParentAnalysisRequest() |
2218
|
|
|
if not parent: |
2219
|
|
|
return list() |
2220
|
|
|
if not all_ancestors: |
2221
|
|
|
return [parent] |
2222
|
|
|
return [parent] + parent.getAncestors(all_ancestors=True) |
2223
|
|
|
|
2224
|
|
|
def isRootAncestor(self): |
2225
|
|
|
"""Returns True if the AR is the root ancestor |
2226
|
|
|
|
2227
|
|
|
:returns: True if the AR has no more parents |
2228
|
|
|
""" |
2229
|
|
|
parent = self.getParentAnalysisRequest() |
2230
|
|
|
if parent: |
2231
|
|
|
return False |
2232
|
|
|
return True |
2233
|
|
|
|
2234
|
|
|
def getDescendants(self, all_descendants=False): |
2235
|
|
|
"""Returns the descendant Analysis Requests |
2236
|
|
|
|
2237
|
|
|
:param all_descendants: recursively include all descendants |
2238
|
|
|
""" |
2239
|
|
|
|
2240
|
|
|
# N.B. full objects returned here from |
2241
|
|
|
# `Products.Archetypes.Referenceable.getBRefs` |
2242
|
|
|
# -> don't add this method into Metadata |
2243
|
|
|
children = self.getBackReferences( |
2244
|
|
|
"AnalysisRequestParentAnalysisRequest") |
2245
|
|
|
|
2246
|
|
|
descendants = [] |
2247
|
|
|
|
2248
|
|
|
# recursively include all children |
2249
|
|
|
if all_descendants: |
2250
|
|
|
for child in children: |
2251
|
|
|
descendants.append(child) |
2252
|
|
|
descendants += child.getDescendants(all_descendants=True) |
2253
|
|
|
else: |
2254
|
|
|
descendants = children |
2255
|
|
|
|
2256
|
|
|
return descendants |
2257
|
|
|
|
2258
|
|
|
def getDescendantsUIDs(self, all_descendants=False): |
2259
|
|
|
"""Returns the UIDs of the descendant Analysis Requests |
2260
|
|
|
|
2261
|
|
|
This method is used as metadata |
2262
|
|
|
""" |
2263
|
|
|
descendants = self.getDescendants(all_descendants=all_descendants) |
2264
|
|
|
return map(api.get_uid, descendants) |
2265
|
|
|
|
2266
|
|
|
def isPartition(self): |
2267
|
|
|
"""Returns true if this Analysis Request is a partition |
2268
|
|
|
""" |
2269
|
|
|
return not self.isRootAncestor() |
2270
|
|
|
|
2271
|
|
|
# TODO Remove in favour of getSamplingWorkflowEnabled |
2272
|
|
|
def getSamplingRequired(self): |
2273
|
|
|
"""Returns True if the sample of this Analysis Request has to be |
2274
|
|
|
collected by the laboratory personnel |
2275
|
|
|
""" |
2276
|
|
|
return self.getSamplingWorkflowEnabled() |
2277
|
|
|
|
2278
|
|
|
def isOpen(self): |
2279
|
|
|
"""Returns whether all analyses from this Analysis Request are open |
2280
|
|
|
(their status is either "assigned" or "unassigned") |
2281
|
|
|
""" |
2282
|
|
|
for analysis in self.getAnalyses(): |
2283
|
|
|
if not api.get_object(analysis).isOpen(): |
2284
|
|
|
return False |
2285
|
|
|
return True |
2286
|
|
|
|
2287
|
|
|
def setParentAnalysisRequest(self, value): |
2288
|
|
|
"""Sets a parent analysis request, making the current a partition |
2289
|
|
|
""" |
2290
|
|
|
self.Schema().getField("ParentAnalysisRequest").set(self, value) |
2291
|
|
|
if not value: |
2292
|
|
|
noLongerProvides(self, IAnalysisRequestPartition) |
2293
|
|
|
else: |
2294
|
|
|
alsoProvides(self, IAnalysisRequestPartition) |
2295
|
|
|
|
2296
|
|
|
def getSecondaryAnalysisRequests(self): |
2297
|
|
|
"""Returns the secondary analysis requests from this analysis request |
2298
|
|
|
""" |
2299
|
|
|
relationship = "AnalysisRequestPrimaryAnalysisRequest" |
2300
|
|
|
return self.getBackReferences(relationship=relationship) |
2301
|
|
|
|
2302
|
|
|
def setDateReceived(self, value): |
2303
|
|
|
"""Sets the date received to this analysis request and to secondary |
2304
|
|
|
analysis requests |
2305
|
|
|
""" |
2306
|
|
|
self.Schema().getField('DateReceived').set(self, value) |
2307
|
|
|
for secondary in self.getSecondaryAnalysisRequests(): |
2308
|
|
|
secondary.setDateReceived(value) |
2309
|
|
|
secondary.reindexObject(idxs=["getDateReceived", "is_received"]) |
2310
|
|
|
|
2311
|
|
|
def setDateSampled(self, value): |
2312
|
|
|
"""Sets the date sampled to this analysis request and to secondary |
2313
|
|
|
analysis requests |
2314
|
|
|
""" |
2315
|
|
|
self.Schema().getField('DateSampled').set(self, value) |
2316
|
|
|
for secondary in self.getSecondaryAnalysisRequests(): |
2317
|
|
|
secondary.setDateSampled(value) |
2318
|
|
|
secondary.reindexObject(idxs="getDateSampled") |
2319
|
|
|
|
2320
|
|
|
def setSamplingDate(self, value): |
2321
|
|
|
"""Sets the sampling date to this analysis request and to secondary |
2322
|
|
|
analysis requests |
2323
|
|
|
""" |
2324
|
|
|
self.Schema().getField('SamplingDate').set(self, value) |
2325
|
|
|
for secondary in self.getSecondaryAnalysisRequests(): |
2326
|
|
|
secondary.setSamplingDate(value) |
2327
|
|
|
secondary.reindexObject(idxs="getSamplingDate") |
2328
|
|
|
|
2329
|
|
|
def getSelectedRejectionReasons(self): |
2330
|
|
|
"""Returns a list with the selected rejection reasons, if any |
2331
|
|
|
""" |
2332
|
|
|
reasons = self.getRejectionReasons() |
2333
|
|
|
if not reasons: |
2334
|
|
|
return [] |
2335
|
|
|
return reasons[0].get("selected", []) |
2336
|
|
|
|
2337
|
|
|
def getOtherRejectionReasons(self): |
2338
|
|
|
"""Returns other rejection reasons custom text, if any |
2339
|
|
|
""" |
2340
|
|
|
reasons = self.getRejectionReasons() |
2341
|
|
|
if not reasons: |
2342
|
|
|
return "" |
2343
|
|
|
return reasons[0].get("other", "") |
2344
|
|
|
|
2345
|
|
|
|
2346
|
|
|
registerType(AnalysisRequest, PROJECTNAME) |
2347
|
|
|
|