bika.lims.exportimport.instruments.thermoscientific.multiskan.go

Complexity

Total Complexity

14

Size/Duplication

Total Lines	92
Duplicated Lines	66.3 %

Importance

Changes

0

2 Methods

Rating	Name	Duplication	Size	Complexity
A	ThermoScientificMultiskanGOImporter.getKeywordsToBeExcluded()	0	2	1
A	ThermoScientificMultiskanGOCSVParser.getAttachmentFileType()	0	2	1

# -*- coding: utf-8 -*-
#
# This file is part of SENAITE.CORE
#
# Copyright 2018 by it's authors.
# Some rights reserved. See LICENSE.rst, CONTRIBUTORS.rst.

"""Multiskan GO Microplate Spectrophotometer
"""
from bika.lims import bikaMessageFactory as _
from bika.lims.utils import t
from . import ThermoScientificMultiskanCSVParser, ThermoScientificMultiskanImporter
import json
import traceback

title = "Thermo Scientific Multiskan - GO Microplate Spectrophotometer"


def Import(context, request):

This code seems to be duplicated in your project.

    """ Thermo Scientific Multiskan GO analysis results
    """
    infile = request.form['data_file']
    fileformat = request.form['format']
    artoapply = request.form['artoapply']
    override = request.form['override']
    instrument = request.form.get('instrument', None)
    analysis = request.form.get('analysis', None)
    errors = []
    logs = []
    warns = []

    # Load the most suitable parser according to file extension/options/etc...
    parser = None
    if not hasattr(infile, 'filename'):
        errors.append(_("No file selected"))
    if fileformat == 'csv':
        if not analysis:
            errors.append(_("No analysis service selected"))
        parser = ThermoScientificMultiskanGOCSVParser(infile, analysis)
    else:
        errors.append(t(_("Unrecognized file format ${fileformat}",
                          mapping={"fileformat": fileformat})))

    if parser:
        # Load the importer
        status = ['sample_received', 'attachment_due', 'to_be_verified']
        if artoapply == 'received':
            status = ['sample_received']
        elif artoapply == 'received_tobeverified':
            status = ['sample_received', 'attachment_due', 'to_be_verified']

        over = [False, False]
        if override == 'nooverride':
            over = [False, False]
        elif override == 'override':
            over = [True, False]
        elif override == 'overrideempty':
            over = [True, True]

        importer = ThermoScientificMultiskanGOImporter(parser=parser,
                                                       context=context,
                                                       allowed_ar_states=status,
                                                       allowed_analysis_states=None,
                                                       override=over,
                                                       instrument_uid=instrument)
        tbex = ''
        try:
            importer.process()
        except:
            tbex = traceback.format_exc()
        errors = importer.errors
        logs = importer.logs
        warns = importer.warns
        if tbex:
            errors.append(tbex)

    results = {'errors': errors, 'log': logs, 'warns': warns}

    return json.dumps(results)


class ThermoScientificMultiskanGOCSVParser(ThermoScientificMultiskanCSVParser):

    def getAttachmentFileType(self):
        return "Thermo Scientific Multiskan - GO Microplate Spectrophotometer"


class ThermoScientificMultiskanGOImporter(ThermoScientificMultiskanImporter):

    def getKeywordsToBeExcluded(self):
        return []