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# -*- coding: utf-8 -*- |
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# |
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# This file is part of SENAITE.CORE |
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# |
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# Copyright 2018 by it's authors. |
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# Some rights reserved. See LICENSE.rst, CONTRIBUTORS.rst. |
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import collections |
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from datetime import datetime |
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from bika.lims import api |
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from bika.lims import bikaMessageFactory as _ |
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from bika.lims import logger |
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from bika.lims.browser import BrowserView |
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from bika.lims.browser.analyses import AnalysesView |
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from bika.lims.browser.bika_listing import BikaListingView |
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from bika.lims.browser.chart.analyses import EvolutionChart |
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from bika.lims.utils import get_image |
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from bika.lims.utils import get_link |
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from bika.lims.utils import t |
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from plone.app.layout.globals.interfaces import IViewView |
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from plone.memoize import view |
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from Products.Archetypes.config import REFERENCE_CATALOG |
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from Products.ATContentTypes.utils import DT2dt |
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from Products.CMFCore.utils import getToolByName |
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from Products.Five.browser.pagetemplatefile import ViewPageTemplateFile |
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from zope.interface import implements |
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class ViewView(BrowserView): |
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""" Reference Sample View |
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""" |
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implements(IViewView) |
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template = ViewPageTemplateFile("templates/referencesample_view.pt") |
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def __init__(self, context, request): |
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BrowserView.__init__(self, context, request) |
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self.icon = self.portal_url +\ |
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"/++resource++bika.lims.images/referencesample_big.png" |
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def __call__(self): |
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rc = getToolByName(self.context, REFERENCE_CATALOG) |
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self.results = {} # {category_title: listofdicts} |
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for r in self.context.getReferenceResults(): |
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service = rc.lookupObject(r['uid']) |
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cat = service.getCategoryTitle() |
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if cat not in self.results: |
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self.results[cat] = [] |
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r['service'] = service |
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self.results[cat].append(r) |
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self.categories = self.results.keys() |
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self.categories.sort() |
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return self.template() |
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class ReferenceAnalysesViewView(BrowserView): |
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""" View of Reference Analyses linked to the Reference Sample. |
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""" |
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implements(IViewView) |
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template = ViewPageTemplateFile("templates/referencesample_analyses.pt") |
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def __init__(self, context, request): |
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super(ReferenceAnalysesViewView, self).__init__(context, request) |
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self.icon = self.portal_url + \ |
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"/++resource++bika.lims.images/referencesample_big.png" |
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self.title = self.context.translate(_("Reference Analyses")) |
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self.description = "" |
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self._analysesview = None |
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def __call__(self): |
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return self.template() |
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def get_analyses_table(self): |
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""" Returns the table of Reference Analyses |
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""" |
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return self.get_analyses_view().contents_table() |
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def get_analyses_view(self): |
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if not self._analysesview: |
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# Creates the Analyses View if not exists yet |
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self._analysesview = ReferenceAnalysesView( |
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self.context, self.request) |
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self._analysesview.allow_edit = False |
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self._analysesview.show_select_column = False |
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self._analysesview.show_workflow_action_buttons = False |
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self._analysesview.form_id = "%s_qcanalyses" % self.context.UID() |
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self._analysesview.review_states[0]['transitions'] = [{}] |
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return self._analysesview |
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def getReferenceSampleId(self): |
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return self.context.id |
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def get_analyses_json(self): |
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return self.get_analyses_view().chart.get_json() |
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class ReferenceAnalysesView(AnalysesView): |
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""" Reference Analyses on this sample |
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""" |
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implements(IViewView) |
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def __init__(self, context, request): |
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AnalysesView.__init__(self, context, request) |
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self.contentFilter = { |
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'portal_type': 'ReferenceAnalysis', |
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'path': {'query': "/".join(self.context.getPhysicalPath()), |
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'level': 0}} |
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self.columns = { |
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'id': {'title': _('ID'), 'toggle': False}, |
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'getReferenceAnalysesGroupID': { |
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'title': _('QC Sample ID'), 'toggle': True}, |
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'Category': {'title': _('Category'), 'toggle': True}, |
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'Service': {'title': _('Service'), 'toggle': True}, |
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'Worksheet': {'title': _('Worksheet'), 'toggle': True}, |
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'Method': { |
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'title': _('Method'), |
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'sortable': False, |
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'toggle': True}, |
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'Instrument': { |
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'title': _('Instrument'), |
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'sortable': False, |
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'toggle': True}, |
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'Result': {'title': _('Result'), 'toggle': True}, |
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'CaptureDate': { |
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'title': _('Captured'), |
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'index': 'getResultCaptureDate', |
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'toggle': True}, |
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'Uncertainty': {'title': _('+-'), 'toggle': True}, |
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'DueDate': {'title': _('Due Date'), |
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'index': 'getDueDate', |
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'toggle': True}, |
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'retested': {'title': _('Retested'), |
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'type': 'boolean', 'toggle': True}, |
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'state_title': {'title': _('State'), 'toggle': True}, |
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} |
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self.review_states = [ |
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{'id': 'default', |
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'title': _('All'), |
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'contentFilter': {}, |
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'transitions': [], |
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'columns':['id', |
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'getReferenceAnalysesGroupID', |
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'Category', |
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'Service', |
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'Worksheet', |
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'Method', |
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'Instrument', |
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'Result', |
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'CaptureDate', |
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'Uncertainty', |
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'DueDate', |
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'state_title'], |
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}, |
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] |
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self.chart = EvolutionChart() |
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def isItemAllowed(self, obj): |
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""" |
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:obj: it is a brain |
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""" |
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allowed = super(ReferenceAnalysesView, self).isItemAllowed(obj) |
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return allowed if not allowed else obj.getResult != '' |
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def folderitem(self, obj, item, index): |
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""" |
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:obj: it is a brain |
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""" |
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item = super(ReferenceAnalysesView, self).folderitem(obj, item, index) |
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if not item: |
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return None |
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item['Category'] = obj.getCategoryTitle |
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wss = self.rc.getBackReferences( |
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obj.UID, |
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relationship="WorksheetAnalysis") |
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if not wss: |
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logger.warn( |
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'No Worksheet found for ReferenceAnalysis {}' |
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.format(obj.getId)) |
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elif wss and len(wss) == 1: |
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# TODO-performance: We are getting the object here... |
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ws = wss[0].getSourceObject() |
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item['Worksheet'] = ws.Title() |
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anchor = '<a href="%s">%s</a>' % (ws.absolute_url(), ws.Title()) |
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item['replace']['Worksheet'] = anchor |
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else: |
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logger.warn( |
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'More than one Worksheet found for ReferenceAnalysis {}' |
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.format(obj.getId)) |
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# Add the analysis to the QC Chart |
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self.chart.add_analysis(obj) |
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return item |
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class ReferenceResultsView(BikaListingView): |
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"""Listing of all reference results |
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""" |
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def __init__(self, context, request): |
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super(ReferenceResultsView, self).__init__(context, request) |
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self.catalog = "bika_setup_catalog" |
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self.contentFilter = { |
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"portal_type": "AnalysisService", |
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"UID": self.get_reference_results().keys(), |
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"inactive_state": "active", |
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"sort_on": "sortable_title", |
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"sort_order": "ascending", |
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} |
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self.context_actions = {} |
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self.title = self.context.translate(_("Reference Values")) |
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self.icon = "{}/{}".format( |
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self.portal_url, |
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"/++resource++bika.lims.images/referencesample_big.png" |
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) |
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self.show_sort_column = False |
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self.show_select_row = False |
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self.show_workflow_action_buttons = False |
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self.show_select_column = False |
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self.pagesize = 999999 |
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self.show_search = False |
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# Categories |
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if self.show_categories_enabled(): |
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self.categories = [] |
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self.show_categories = True |
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self.expand_all_categories = True |
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self.category_index = "getCategoryTitle" |
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self.columns = collections.OrderedDict(( |
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("Title", { |
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"title": _("Analysis Service"), |
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"sortable": False}), |
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("result", { |
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"title": _("Expected Result"), |
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"sortable": False}), |
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("error", { |
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"title": _("Permitted Error %"), |
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"sortable": False}), |
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("min", { |
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"title": _("Min"), |
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"sortable": False}), |
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("max", { |
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"title": _("Max"), |
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"sortable": False}), |
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)) |
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self.review_states = [ |
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{ |
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"id": "default", |
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"title": _("All"), |
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"contentFilter": {}, |
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"columns": self.columns.keys() |
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} |
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] |
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def update(self): |
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"""Update hook |
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""" |
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super(ReferenceResultsView, self).update() |
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self.categories.sort() |
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@view.memoize |
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def show_categories_enabled(self): |
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"""Check in the setup if categories are enabled |
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""" |
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return self.context.bika_setup.getCategoriseAnalysisServices() |
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@view.memoize |
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def get_reference_results(self): |
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"""Return a mapping of Analysis Service -> Reference Results |
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""" |
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referenceresults = self.context.getReferenceResults() |
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return dict(map(lambda rr: (rr.get("uid"), rr), referenceresults)) |
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def folderitem(self, obj, item, index): |
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"""Service triggered each time an item is iterated in folderitems. |
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The use of this service prevents the extra-loops in child objects. |
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:obj: the instance of the class to be foldered |
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:item: dict containing the properties of the object to be used by |
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the template |
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:index: current index of the item |
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""" |
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uid = api.get_uid(obj) |
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url = api.get_url(obj) |
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title = api.get_title(obj) |
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# get the category |
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if self.show_categories_enabled(): |
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category = obj.getCategoryTitle() |
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if category not in self.categories: |
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self.categories.append(category) |
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item["category"] = category |
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ref_results = self.get_reference_results() |
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ref_result = ref_results.get(uid) |
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item["Title"] = title |
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item["replace"]["Title"] = get_link(url, value=title) |
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item["result"] = ref_result.get("result") |
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item["min"] = ref_result.get("min") |
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item["max"] = ref_result.get("max") |
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# Icons |
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after_icons = "" |
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if obj.getAccredited(): |
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after_icons += get_image( |
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"accredited.png", title=_("Accredited")) |
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if obj.getAttachmentOption() == "r": |
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after_icons += get_image( |
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"attach_reqd.png", title=_("Attachment required")) |
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if obj.getAttachmentOption() == "n": |
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after_icons += get_image( |
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"attach_no.png", title=_("Attachment not permitted")) |
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if after_icons: |
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item["after"]["Title"] = after_icons |
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return item |
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324
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325
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class ReferenceSamplesView(BikaListingView): |
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"""Main reference samples folder view |
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""" |
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def __init__(self, context, request): |
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super(ReferenceSamplesView, self).__init__(context, request) |
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self.icon = self.portal_url + \ |
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"/++resource++bika.lims.images/referencesample_big.png" |
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self.title = self.context.translate(_("Reference Samples")) |
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self.catalog = 'bika_catalog' |
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self.contentFilter = {'portal_type': 'ReferenceSample', |
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'sort_on': 'id', |
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'sort_order': 'reverse', |
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'path': {"query": ["/"], "level": 0}, } |
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self.context_actions = {} |
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self.show_select_column = True |
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341
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self.columns = { |
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'ID': { |
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'title': _('ID'), |
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'index': 'id'}, |
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'Title': { |
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'title': _('Title'), |
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'index': 'sortable_title', |
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'toggle': True}, |
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'Supplier': { |
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'title': _('Supplier'), |
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'toggle': True, |
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'attr': 'aq_parent.Title', |
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'replace_url': 'aq_parent.absolute_url'}, |
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'Manufacturer': { |
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'title': _('Manufacturer'), |
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'toggle': True, |
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'attr': 'getManufacturer.Title', |
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'replace_url': 'getManufacturer.absolute_url'}, |
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'Definition': { |
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'title': _('Reference Definition'), |
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'toggle': True, |
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'attr': 'getReferenceDefinition.Title', |
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'replace_url': 'getReferenceDefinition.absolute_url'}, |
|
364
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|
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'DateSampled': { |
|
365
|
|
|
'title': _('Date Sampled'), |
|
366
|
|
|
'index': 'getDateSampled', |
|
367
|
|
|
'toggle': True}, |
|
368
|
|
|
'DateReceived': { |
|
369
|
|
|
'title': _('Date Received'), |
|
370
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|
|
'index': 'getDateReceived', |
|
371
|
|
|
'toggle': True}, |
|
372
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|
|
'DateOpened': { |
|
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|
|
'title': _('Date Opened'), |
|
374
|
|
|
'toggle': True}, |
|
375
|
|
|
'ExpiryDate': { |
|
376
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|
|
'title': _('Expiry Date'), |
|
377
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|
|
'index': 'getExpiryDate', |
|
378
|
|
|
'toggle': True}, |
|
379
|
|
|
'state_title': { |
|
380
|
|
|
'title': _('State'), |
|
381
|
|
|
'toggle': True}, |
|
382
|
|
|
} |
|
383
|
|
|
self.review_states = [ |
|
384
|
|
|
{'id': 'default', |
|
385
|
|
|
'title': _('Current'), |
|
386
|
|
|
'contentFilter': {'review_state': 'current'}, |
|
387
|
|
|
'columns': ['ID', |
|
388
|
|
|
'Title', |
|
389
|
|
|
'Supplier', |
|
390
|
|
|
'Manufacturer', |
|
391
|
|
|
'Definition', |
|
392
|
|
|
'DateSampled', |
|
393
|
|
|
'DateReceived', |
|
394
|
|
|
'DateOpened', |
|
395
|
|
|
'ExpiryDate']}, |
|
396
|
|
|
{'id': 'expired', |
|
397
|
|
|
'title': _('Expired'), |
|
398
|
|
|
'contentFilter': {'review_state': 'expired'}, |
|
399
|
|
|
'columns': ['ID', |
|
400
|
|
|
'Title', |
|
401
|
|
|
'Supplier', |
|
402
|
|
|
'Manufacturer', |
|
403
|
|
|
'Definition', |
|
404
|
|
|
'DateSampled', |
|
405
|
|
|
'DateReceived', |
|
406
|
|
|
'DateOpened', |
|
407
|
|
|
'ExpiryDate']}, |
|
408
|
|
|
{'id': 'disposed', |
|
409
|
|
|
'title': _('Disposed'), |
|
410
|
|
|
'contentFilter': {'review_state': 'disposed'}, |
|
411
|
|
|
'columns': ['ID', |
|
412
|
|
|
'Title', |
|
413
|
|
|
'Supplier', |
|
414
|
|
|
'Manufacturer', |
|
415
|
|
|
'Definition', |
|
416
|
|
|
'DateSampled', |
|
417
|
|
|
'DateReceived', |
|
418
|
|
|
'DateOpened', |
|
419
|
|
|
'ExpiryDate']}, |
|
420
|
|
|
{'id': 'all', |
|
421
|
|
|
'title': _('All'), |
|
422
|
|
|
'contentFilter': {}, |
|
423
|
|
|
'columns': ['ID', |
|
424
|
|
|
'Title', |
|
425
|
|
|
'Supplier', |
|
426
|
|
|
'Manufacturer', |
|
427
|
|
|
'Definition', |
|
428
|
|
|
'DateSampled', |
|
429
|
|
|
'DateReceived', |
|
430
|
|
|
'DateOpened', |
|
431
|
|
|
'ExpiryDate', |
|
432
|
|
|
'state_title']}, |
|
433
|
|
|
] |
|
434
|
|
|
|
|
435
|
|
|
def folderitem(self, obj, item, index): |
|
436
|
|
|
if item.get('review_state', 'current') == 'current': |
|
437
|
|
|
# Check expiry date |
|
438
|
|
|
exdate = obj.getExpiryDate() |
|
439
|
|
|
if exdate: |
|
440
|
|
|
expirydate = DT2dt(exdate).replace(tzinfo=None) |
|
441
|
|
|
if (datetime.today() > expirydate): |
|
442
|
|
|
# Trigger expiration |
|
443
|
|
|
self.workflow.doActionFor(obj, 'expire') |
|
444
|
|
|
item['review_state'] = 'expired' |
|
445
|
|
|
item['obj'] = obj |
|
446
|
|
|
|
|
447
|
|
|
if self.contentFilter.get('review_state', '') \ |
|
448
|
|
|
and item.get('review_state', '') == 'expired': |
|
449
|
|
|
# This item must be omitted from the list |
|
450
|
|
|
return None |
|
451
|
|
|
|
|
452
|
|
|
item['ID'] = obj.id |
|
453
|
|
|
item['DateSampled'] = self.ulocalized_time( |
|
454
|
|
|
obj.getDateSampled(), long_format=True) |
|
455
|
|
|
item['DateReceived'] = self.ulocalized_time(obj.getDateReceived()) |
|
456
|
|
|
item['DateOpened'] = self.ulocalized_time(obj.getDateOpened()) |
|
457
|
|
|
item['ExpiryDate'] = self.ulocalized_time(obj.getExpiryDate()) |
|
458
|
|
|
|
|
459
|
|
|
after_icons = '' |
|
460
|
|
|
if obj.getBlank(): |
|
461
|
|
|
after_icons += "<img\ |
|
462
|
|
|
src='%s/++resource++bika.lims.images/blank.png' \ |
|
463
|
|
|
title='%s'>" % (self.portal_url, t(_('Blank'))) |
|
464
|
|
|
if obj.getHazardous(): |
|
465
|
|
|
after_icons += "<img\ |
|
466
|
|
|
src='%s/++resource++bika.lims.images/hazardous.png' \ |
|
467
|
|
|
title='%s'>" % (self.portal_url, t(_('Hazardous'))) |
|
468
|
|
|
item['replace']['ID'] = "<a href='%s/base_view'>%s</a> %s" % \ |
|
469
|
|
|
(item['url'], item['ID'], after_icons) |
|
470
|
|
|
return item |
|
471
|
|
|
|
senaite /
senaite.core
