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# -*- coding: utf-8 -*- |
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# |
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# This file is part of SENAITE.CORE. |
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# |
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# SENAITE.CORE is free software: you can redistribute it and/or modify it under |
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# the terms of the GNU General Public License as published by the Free Software |
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# Foundation, version 2. |
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# |
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# This program is distributed in the hope that it will be useful, but WITHOUT |
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# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS |
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# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more |
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# details. |
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# |
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# You should have received a copy of the GNU General Public License along with |
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# this program; if not, write to the Free Software Foundation, Inc., 51 |
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# Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. |
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# |
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# Copyright 2018-2024 by it's authors. |
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# Some rights reserved, see README and LICENSE. |
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from AccessControl import ClassSecurityInfo |
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from Products.CMFCore import permissions |
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from bika.lims import api |
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from bika.lims import deprecated |
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from bika.lims import senaiteMessageFactory as _ |
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from bika.lims.interfaces import IDeactivable |
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from plone.supermodel import model |
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from plone.autoform import directives |
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from senaite.core.catalog import SETUP_CATALOG |
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from senaite.core.schema import UIDReferenceField |
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from senaite.core.schema.fields import DataGridRow |
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from senaite.core.content.base import Container |
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from senaite.core.config.widgets import get_default_columns |
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from senaite.core.interfaces import IWorksheetTemplate |
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from senaite.core.z3cform.widgets.number import NumberWidget |
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from senaite.core.z3cform.widgets.datagrid import DataGridWidgetFactory |
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from senaite.core.z3cform.widgets.uidreference import UIDReferenceWidgetFactory |
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from senaite.core.z3cform.widgets.listing.widget import ListingWidgetFactory |
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from zope import schema |
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from zope.interface import Interface |
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from zope.interface import implementer |
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from zope.schema.vocabulary import SimpleVocabulary |
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from z3c.form.interfaces import DISPLAY_MODE |
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from six.moves.urllib.parse import parse_qs |
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def get_query_num_positions(): |
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request = api.get_request() |
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if request: |
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params = dict(parse_qs(request["QUERY_STRING"])) |
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values = params.get("num_positions") |
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return int(values[0]) if values else 0 |
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return 0 |
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def default_layout_positions(count_positions=None, start_pos=0): |
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"""Generate preset for Template Layout for new WorksheetTemplate with query |
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string parameter 'num_positions' or generate preset from edit form |
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:param count_positions: number of positions for Worksheet |
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:param start_pos: Index for starting first position |
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:returns: Array of object for description layout of worksheet |
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""" |
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num_positions = get_query_num_positions() |
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if count_positions: |
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num_positions = int(count_positions) |
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default_value = [] |
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for i in range(num_positions): |
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default_value.append({ |
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"pos": start_pos + i + 1, |
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"type": "a", |
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"blank_ref": [], |
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"control_ref": [], |
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"reference_proxy": None, |
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"dup_proxy": None, |
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"dup": None, |
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}) |
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return default_value |
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class IWorksheetTemplateServiceRecord(Interface): |
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"""Record schema for selected services |
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""" |
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uid = schema.TextLine( |
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title=_(u"title_service_uid", default=u"Service UID") |
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) |
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class ILayoutRecord(Interface): |
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"""Record schema for layout worksheet |
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""" |
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directives.widget("pos", klass="field") |
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pos = schema.Int( |
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title=_( |
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u"title_layout_record_pos", |
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default=u"Position" |
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), |
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required=True, |
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default=1, |
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) |
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directives.widget("type", klass="field") |
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type = schema.Choice( |
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title=_( |
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u"title_layout_record_type", |
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default=u"Analysis Type" |
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), |
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vocabulary="senaite.core.vocabularies.analysis_types", |
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required=True, |
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default=u"a", |
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) |
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directives.widget( |
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"blank_ref", |
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UIDReferenceWidgetFactory, |
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catalog=SETUP_CATALOG, |
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query={ |
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"portal_type": "ReferenceDefinition", |
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"is_active": True, |
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"sort_limit": 5, |
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"sort_on": "sortable_title", |
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"sort_order": "ascending", |
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}, |
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display_template="<a href='${url}'>${title}</a>", |
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columns=get_default_columns, |
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limit=5, |
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) |
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directives.mode(blank_ref="hidden") |
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blank_ref = UIDReferenceField( |
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title=_( |
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u"title_layout_record_blank_ref", |
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default=u"Blank Reference" |
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), |
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allowed_types=("ReferenceDefinition",), |
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multi_valued=False, |
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required=False, |
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) |
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directives.widget( |
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"control_ref", |
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UIDReferenceWidgetFactory, |
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catalog=SETUP_CATALOG, |
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query={ |
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"portal_type": "ReferenceDefinition", |
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"is_active": True, |
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"sort_limit": 5, |
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"sort_on": "sortable_title", |
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"sort_order": "ascending", |
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}, |
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display_template="<a href='${url}'>${title}</a>", |
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columns=get_default_columns, |
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limit=5, |
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) |
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directives.mode(control_ref="hidden") |
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control_ref = UIDReferenceField( |
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title=_( |
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u"title_layout_record_control_ref", |
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default=u"Control Reference" |
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), |
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allowed_types=("ReferenceDefinition",), |
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multi_valued=False, |
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required=False, |
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) |
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directives.widget("reference_proxy", klass="field") |
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reference_proxy = schema.Choice( |
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title=_( |
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u"title_layout_record_reference_proxy", |
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default=u"Reference" |
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), |
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vocabulary="senaite.core.vocabularies.reference_definition", |
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required=False, |
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default=None, |
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) |
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directives.widget("dup_proxy", klass="field") |
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dup_proxy = schema.Choice( |
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title=_( |
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u"title_layout_record_dup_proxy", |
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default=u"Duplicate Of" |
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), |
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source=SimpleVocabulary.fromValues([0]), |
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required=False, |
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default=None, |
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) |
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directives.mode(dup="hidden") |
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dup = schema.Int( |
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title=_( |
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u"title_layout_record_dup", |
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default=u"Duplicate Of" |
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), |
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required=False, |
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default=None, |
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) |
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class IWorksheetTemplateSchema(model.Schema): |
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"""Schema interface |
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""" |
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title = schema.TextLine( |
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title=_( |
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u"title_worksheettemplate_title", |
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default=u"Name" |
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), |
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required=True, |
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) |
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description = schema.Text( |
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title=_( |
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u"title_worksheettemplate_description", |
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default=u"Description" |
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), |
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required=False, |
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) |
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directives.widget( |
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"restrict_to_method", |
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UIDReferenceWidgetFactory, |
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catalog=SETUP_CATALOG, |
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query={ |
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"portal_type": "Method", |
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"is_active": True, |
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"sort_limit": 5, |
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"sort_on": "sortable_title", |
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"sort_order": "ascending", |
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}, |
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display_template="<a href='${url}'>${title}</a>", |
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columns=get_default_columns, |
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limit=5, |
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) |
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restrict_to_method = UIDReferenceField( |
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title=_( |
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u"label_worksheettemplate_restrict_to_method", |
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default=u"Restrict to Method" |
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), |
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description=_( |
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u"description_worksheettemplate_restrict_to_method", |
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default=u"Restrict the available analysis services and " |
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u"instruments to those with the selected method.<br/>" |
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u"In order to apply this change to the services list, " |
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u"you should save the change first." |
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), |
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allowed_types=("Method",), |
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multi_valued=False, |
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required=False, |
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) |
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directives.widget( |
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"instrument", |
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UIDReferenceWidgetFactory, |
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catalog=SETUP_CATALOG, |
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query="get_instrument_query", |
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display_template="<a href='${url}'>${title}</a>", |
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columns=get_default_columns, |
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limit=5, |
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) |
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instrument = UIDReferenceField( |
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title=_( |
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u"label_worksheettemplate_instrument", |
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default=u"Preferred instrument" |
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), |
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description=_(u"description_worksheettemplate_instrument", |
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default=u"Select the preferred instrument"), |
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allowed_types=("Instrument",), |
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multi_valued=False, |
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required=False, |
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) |
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model.fieldset( |
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"layout", |
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label=_( |
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u"label_fieldset_worksheettemplate_layout", |
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default=u"Layout" |
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), |
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fields=[ |
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"num_of_positions", |
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"template_layout", |
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] |
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) |
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directives.widget( |
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"num_of_positions", |
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NumberWidget, |
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klass="num-positions") |
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num_of_positions = schema.Int( |
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title=_( |
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u"title_worksheettemplate_num_of_positions", |
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default=u"Number of Positions" |
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), |
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required=False, |
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defaultFactory=get_query_num_positions, |
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min=0, |
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default=0, |
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) |
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directives.widget( |
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"template_layout", |
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DataGridWidgetFactory, |
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allow_insert=False, |
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allow_delete=False, |
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allow_reorder=False, |
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auto_append=False, |
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templates = { |
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DISPLAY_MODE: "ws_template_datagrid_display.pt", |
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}) |
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template_layout = schema.List( |
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title=_( |
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u"title_worksheettemplate_template_layout", |
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default=u"Worksheet Layout" |
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), |
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description=_( |
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u"description_worksheettemplate_template_layout", |
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default=u"Specify the size of the Worksheet, e.g. corresponding " |
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u"to a specific instrument's tray size. " |
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u"Then select an Analysis 'type' per Worksheet position. " |
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u"Where QC samples are selected, also select which " |
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u"Reference Sample should be used. " |
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u"If a duplicate analysis is selected, indicate which " |
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u"sample position it should be a duplicate of" |
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), |
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value_type=DataGridRow(schema=ILayoutRecord), |
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defaultFactory=default_layout_positions, |
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required=True, |
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) |
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model.fieldset( |
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331
|
|
|
"analyses", |
|
332
|
|
|
label=_(u"label_fieldset_worksheettemplate_analyses", |
|
333
|
|
|
default=u"Analyses"), |
|
334
|
|
|
fields=[ |
|
335
|
|
|
"services", |
|
336
|
|
|
] |
|
337
|
|
|
) |
|
338
|
|
|
|
|
339
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|
|
# Services |
|
340
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|
|
directives.widget( |
|
341
|
|
|
"services", |
|
342
|
|
|
ListingWidgetFactory, |
|
343
|
|
|
listing_view="worksheettemplate_services_widget" |
|
344
|
|
|
) |
|
345
|
|
|
services = schema.List( |
|
346
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|
|
title=_( |
|
347
|
|
|
u"title_worksheettemplate_services", |
|
348
|
|
|
default=u"Analysis Services" |
|
349
|
|
|
), |
|
350
|
|
|
description=_( |
|
351
|
|
|
u"description_worksheettemplate_services", |
|
352
|
|
|
default=u"Select which Analyses should be included on the " |
|
353
|
|
|
u"Worksheet" |
|
354
|
|
|
), |
|
355
|
|
|
value_type=DataGridRow(schema=IWorksheetTemplateServiceRecord), |
|
356
|
|
|
default=[], |
|
357
|
|
|
required=False, |
|
358
|
|
|
) |
|
359
|
|
|
|
|
360
|
|
|
|
|
361
|
|
|
@implementer(IWorksheetTemplate, IWorksheetTemplateSchema, IDeactivable) |
|
362
|
|
|
class WorksheetTemplate(Container): |
|
363
|
|
|
"""Worksheet Template type |
|
364
|
|
|
""" |
|
365
|
|
|
# Catalogs where this type will be catalogued |
|
366
|
|
|
_catalogs = [SETUP_CATALOG] |
|
367
|
|
|
|
|
368
|
|
|
security = ClassSecurityInfo() |
|
369
|
|
|
|
|
370
|
|
|
@security.protected(permissions.View) |
|
371
|
|
|
def getRawRestrictToMethod(self): |
|
372
|
|
|
method = self.getRestrictToMethod() |
|
373
|
|
|
if method: |
|
374
|
|
|
return method.UID() |
|
375
|
|
|
return None |
|
376
|
|
|
|
|
377
|
|
|
@security.protected(permissions.View) |
|
378
|
|
|
def getRestrictToMethod(self): |
|
379
|
|
|
accessor = self.accessor("restrict_to_method") |
|
380
|
|
|
return accessor(self) |
|
381
|
|
|
|
|
382
|
|
|
@security.protected(permissions.ModifyPortalContent) |
|
383
|
|
|
def setRestrictToMethod(self, value): |
|
384
|
|
|
mutator = self.mutator("restrict_to_method") |
|
385
|
|
|
mutator(self, value) |
|
386
|
|
|
|
|
387
|
|
|
# BBB: AT schema field property |
|
388
|
|
|
RestrictToMethod = property(getRestrictToMethod, setRestrictToMethod) |
|
389
|
|
|
|
|
390
|
|
|
@security.protected(permissions.View) |
|
391
|
|
|
def getRawInstrument(self): |
|
392
|
|
|
instrument = self.getInstrument() |
|
393
|
|
|
if instrument: |
|
394
|
|
|
return instrument.UID() |
|
395
|
|
|
return None |
|
396
|
|
|
|
|
397
|
|
|
@security.protected(permissions.View) |
|
398
|
|
|
def getInstrument(self): |
|
399
|
|
|
accessor = self.accessor("instrument") |
|
400
|
|
|
return accessor(self) |
|
401
|
|
|
|
|
402
|
|
|
@security.protected(permissions.ModifyPortalContent) |
|
403
|
|
|
def setInstrument(self, value): |
|
404
|
|
|
mutator = self.mutator("instrument") |
|
405
|
|
|
mutator(self, value) |
|
406
|
|
|
|
|
407
|
|
|
# BBB: AT schema field property |
|
408
|
|
|
Instrument = property(getInstrument, setInstrument) |
|
409
|
|
|
|
|
410
|
|
|
@security.protected(permissions.View) |
|
411
|
|
|
def getNumOfPositions(self): |
|
412
|
|
|
accessor = self.accessor("num_of_positions") |
|
413
|
|
|
return accessor(self) |
|
414
|
|
|
|
|
415
|
|
|
@security.protected(permissions.ModifyPortalContent) |
|
416
|
|
|
def setNumOfPositions(self, value): |
|
417
|
|
|
if value == "": |
|
418
|
|
|
value = 0 |
|
419
|
|
|
nums = int(value) |
|
420
|
|
|
mutator = self.mutator("num_of_positions") |
|
421
|
|
|
mutator(self, nums) |
|
422
|
|
|
layout = self.getTemplateLayout() |
|
423
|
|
|
len_layout = len(layout) |
|
424
|
|
|
if nums == 0: |
|
425
|
|
|
layout = [] |
|
426
|
|
|
elif len_layout == 0 and nums > 0: |
|
427
|
|
|
# create default layout of 'nums' rows |
|
428
|
|
|
layout = default_layout_positions(nums) |
|
429
|
|
|
elif nums > len_layout: |
|
430
|
|
|
rows = nums - len_layout |
|
431
|
|
|
# added count 'rows' rows for layout |
|
432
|
|
|
# starting from index 'len_layout' |
|
433
|
|
|
layout = layout + default_layout_positions(rows, len_layout) |
|
434
|
|
|
elif nums < len_layout: |
|
435
|
|
|
# save firsts of 'nums' rows |
|
436
|
|
|
layout = layout[:nums] |
|
437
|
|
|
self.setTemplateLayout(layout) |
|
438
|
|
|
|
|
439
|
|
|
NumOfPositions = property(getNumOfPositions, setNumOfPositions) |
|
440
|
|
|
|
|
441
|
|
|
@security.protected(permissions.View) |
|
442
|
|
|
def getTemplateLayout(self): |
|
443
|
|
|
accessor = self.accessor("template_layout") |
|
444
|
|
|
return accessor(self) or [] |
|
445
|
|
|
|
|
446
|
|
|
@security.protected(permissions.ModifyPortalContent) |
|
447
|
|
|
def setTemplateLayout(self, value): |
|
448
|
|
|
mutator = self.mutator("template_layout") |
|
449
|
|
|
mutator(self, value) |
|
450
|
|
|
num_pos = len(value) |
|
451
|
|
|
if num_pos != self.getNumOfPositions(): |
|
452
|
|
|
self.setNumOfPositions(num_pos) |
|
453
|
|
|
|
|
454
|
|
|
# BBB: AT schema field property |
|
455
|
|
|
Layout = property(getTemplateLayout, setTemplateLayout) |
|
456
|
|
|
|
|
457
|
|
|
@security.protected(permissions.View) |
|
458
|
|
|
def getRawServices(self): |
|
459
|
|
|
"""Return the raw value of the services field |
|
460
|
|
|
|
|
461
|
|
|
>>> self.getRawServices() |
|
462
|
|
|
['<uid>', ...] |
|
463
|
|
|
|
|
464
|
|
|
:returns: List of uid's |
|
465
|
|
|
""" |
|
466
|
|
|
accessor = self.accessor("services") |
|
467
|
|
|
services = accessor(self) |
|
468
|
|
|
if services: |
|
469
|
|
|
return [s.get("uid") for s in services] |
|
470
|
|
|
return [] |
|
471
|
|
|
|
|
472
|
|
|
@deprecated(comment="If you need to get the service, use getRawServices", |
|
473
|
|
|
replacement="getRawServices") |
|
474
|
|
|
@security.protected(permissions.View) |
|
475
|
|
|
def getRawService(self): |
|
476
|
|
|
return self.getRawServices() |
|
477
|
|
|
|
|
478
|
|
|
@security.protected(permissions.View) |
|
479
|
|
|
def getServices(self): |
|
480
|
|
|
"""Returns a list of service objects |
|
481
|
|
|
|
|
482
|
|
|
>>> self.getServices() |
|
483
|
|
|
[<AnalysisService at ...>, <AnalysisService at ...>, ...] |
|
484
|
|
|
|
|
485
|
|
|
:returns: List of analysis service objects |
|
486
|
|
|
""" |
|
487
|
|
|
services_uids = self.getRawServices() |
|
488
|
|
|
return list(map(api.get_object, services_uids)) |
|
489
|
|
|
|
|
490
|
|
View Code Duplication |
@security.protected(permissions.ModifyPortalContent) |
|
|
|
|
|
|
491
|
|
|
def setServices(self, value): |
|
492
|
|
|
"""Set services for the template |
|
493
|
|
|
|
|
494
|
|
|
This method accepts either a list of analysis service objects, a list |
|
495
|
|
|
of analysis service UIDs or a list of analysis profile service records |
|
496
|
|
|
containing the key `uid`: |
|
497
|
|
|
|
|
498
|
|
|
>>> self.setServices([<AnalysisService at ...>, ...]) |
|
499
|
|
|
>>> self.setServices(['353e1d9bd45d45dbabc837114a9c41e6', '...', ...]) |
|
500
|
|
|
>>> self.setServices([{'uid': '...'}, ...]) |
|
501
|
|
|
|
|
502
|
|
|
Raises a TypeError if the value does not match any allowed type. |
|
503
|
|
|
""" |
|
504
|
|
|
if not isinstance(value, list): |
|
505
|
|
|
value = [value] |
|
506
|
|
|
|
|
507
|
|
|
records = [] |
|
508
|
|
|
for v in value: |
|
509
|
|
|
uid = "" |
|
510
|
|
|
if isinstance(v, dict): |
|
511
|
|
|
uid = api.get_uid(v.get("uid")) |
|
512
|
|
|
elif api.is_object(v): |
|
513
|
|
|
uid = api.get_uid(v) |
|
514
|
|
|
elif api.is_uid(v): |
|
515
|
|
|
uid = v |
|
516
|
|
|
else: |
|
517
|
|
|
raise TypeError( |
|
518
|
|
|
"Expected object, uid or record, got %r" % type(v)) |
|
519
|
|
|
records.append({ |
|
520
|
|
|
"uid": uid, |
|
521
|
|
|
}) |
|
522
|
|
|
|
|
523
|
|
|
mutator = self.mutator("services") |
|
524
|
|
|
mutator(self, records) |
|
525
|
|
|
|
|
526
|
|
|
# BBB: AT schema field property |
|
527
|
|
|
Services = property(getServices, setServices) |
|
528
|
|
|
|
|
529
|
|
|
@security.private |
|
530
|
|
|
def get_instrument_query(self): |
|
531
|
|
|
"""Return the preferred instruments |
|
532
|
|
|
""" |
|
533
|
|
|
query = { |
|
534
|
|
|
"portal_type": "Instrument", |
|
535
|
|
|
"is_active": True, |
|
536
|
|
|
"sort_on": "sortable_title", |
|
537
|
|
|
"sort_order": "ascending", |
|
538
|
|
|
} |
|
539
|
|
|
|
|
540
|
|
|
# Restrict available instruments to those with the selected method |
|
541
|
|
|
method = self.getRestrictToMethod() |
|
542
|
|
View Code Duplication |
if method: |
|
|
|
|
|
|
543
|
|
|
# prepare subquery |
|
544
|
|
|
method_uid = method.UID() |
|
545
|
|
|
uids = [] |
|
546
|
|
|
brains = api.search(query, SETUP_CATALOG) |
|
547
|
|
|
for brain in brains: |
|
548
|
|
|
uid = api.get_uid(brain) |
|
549
|
|
|
instrument = api.get_object(brain) |
|
550
|
|
|
if method_uid in instrument.getRawMethods(): |
|
551
|
|
|
uids.append(uid) |
|
552
|
|
|
# create a simple UID query |
|
553
|
|
|
query = {"UID": uids} |
|
554
|
|
|
return query |
|
555
|
|
|
|