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# -*- coding: utf-8 -*- |
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# |
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# This file is part of SENAITE.CORE |
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# |
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# Copyright 2018 by it's authors. |
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# Some rights reserved. See LICENSE.rst, CONTRIBUTORS.rst. |
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from AccessControl import getSecurityManager |
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from DateTime import DateTime |
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from Products.CMFCore.utils import getToolByName |
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from Products.Five.browser.pagetemplatefile import ViewPageTemplateFile |
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from bika.lims import bikaMessageFactory as _ |
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from bika.lims import api |
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from bika.lims.browser import BrowserView |
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from bika.lims.browser.analyses import AnalysesView |
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from bika.lims.browser.analyses import QCAnalysesView |
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from bika.lims.browser.header_table import HeaderTableView |
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from bika.lims.browser.sample import SamplePartitionsView |
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from bika.lims.config import POINTS_OF_CAPTURE |
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from bika.lims.permissions import * |
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from bika.lims.utils import isActive |
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from bika.lims.utils import t, check_permission |
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from bika.lims.utils import to_utf8 |
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from bika.lims.workflow import doActionFor |
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from bika.lims.workflow import wasTransitionPerformed |
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from plone.app.layout.globals.interfaces import IViewView |
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from zope.interface import implements |
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class AnalysisRequestViewView(BrowserView): |
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""" AR View form |
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The AR fields are printed in a table, using analysisrequest_view.py |
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""" |
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implements(IViewView) |
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template = ViewPageTemplateFile("templates/analysisrequest_view.pt") |
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messages = [] |
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def __init__(self, context, request): |
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self.init__ = super(AnalysisRequestViewView, self).__init__(context, |
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request) |
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self.icon = self.portal_url + "/++resource++bika.lims.images/analysisrequest_big.png" |
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self.messages = [] |
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def __call__(self): |
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ar = self.context |
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workflow = getToolByName(self.context, 'portal_workflow') |
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if 'transition' in self.request.form: |
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doActionFor(self.context, self.request.form['transition']) |
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# If the analysis request has been received and hasn't been yet |
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# verified yet, redirect the user to manage_results view, but only if |
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# the user has privileges to Edit(Field)Results, cause otherwise she/he |
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# will receive an InsufficientPrivileges error! |
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if (self.request.PATH_TRANSLATED.endswith(self.context.id) and |
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check_permission(EditResults, self.context) and |
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check_permission(EditFieldResults, self.context) and |
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wasTransitionPerformed(self.context, 'receive') and |
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not wasTransitionPerformed(self.context, 'verify')): |
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# Redirect to manage results view if not cancelled |
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if api.get_workflow_status_of(ar, 'cancellation_state') != \ |
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"cancelled": |
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manage_results_url = "/".join([self.context.absolute_url(), |
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'manage_results']) |
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self.request.response.redirect(manage_results_url) |
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return |
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# Contacts get expanded for view |
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contact = self.context.getContact() |
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contacts = [] |
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for cc in self.context.getCCContact(): |
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contacts.append(cc) |
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if contact in contacts: |
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contacts.remove(contact) |
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ccemails = [] |
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for cc in contacts: |
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ccemails.append("%s <<a href='mailto:%s'>%s</a>>" |
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% (cc.Title(), cc.getEmailAddress(), cc.getEmailAddress())) |
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# CC Emails become mailto links |
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emails = self.context.getCCEmails() |
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if isinstance(emails, str): |
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emails = emails and [emails, ] or [] |
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cc_emails = [] |
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cc_hrefs = [] |
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for cc in emails: |
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cc_emails.append(cc) |
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cc_hrefs.append("<a href='mailto:%s'>%s</a>" % (cc, cc)) |
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# render header table |
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self.header_table = HeaderTableView(self.context, self.request)() |
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# Create Partitions View for this ARs sample |
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p = SamplePartitionsView(self.context.getSample(), self.request) |
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p.show_column_toggles = False |
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self.parts = p.contents_table() |
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# Create Field and Lab Analyses tables |
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self.tables = {} |
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for poc in POINTS_OF_CAPTURE: |
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if self.context.getAnalyses(getPointOfCapture=poc): |
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t = self.createAnalysesView(ar, |
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self.request, |
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getPointOfCapture=poc, |
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show_categories=self.context.bika_setup.getCategoriseAnalysisServices(), |
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getRequestUID=self.context.UID()) |
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t.allow_edit = True |
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t.form_id = "%s_analyses" % poc |
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t.review_states[0]['transitions'] = [{'id': 'submit'}, |
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{'id': 'retract'}, |
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{'id': 'verify'}] |
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t.show_workflow_action_buttons = True |
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t.show_select_column = True |
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if getSecurityManager().checkPermission(EditFieldResults, self.context) \ |
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and poc == 'field': |
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t.review_states[0]['columns'].remove('DueDate') |
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self.tables[POINTS_OF_CAPTURE.getValue(poc)] = t.contents_table() |
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# Create QC Analyses View for this AR |
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show_cats = self.context.bika_setup.getCategoriseAnalysisServices() |
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qcview = self.createQCAnalyesView(ar, |
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self.request, |
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show_categories=show_cats) |
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qcview.allow_edit = False |
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qcview.show_select_column = False |
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qcview.show_workflow_action_buttons = False |
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qcview.form_id = "%s_qcanalyses" |
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qcview.review_states[0]['transitions'] = [{'id': 'submit'}, |
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{'id': 'retract'}, |
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{'id': 'verify'}] |
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self.qctable = qcview.contents_table() |
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# Create the ResultsInterpretation by department view |
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from resultsinterpretation import ARResultsInterpretationView |
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self.riview = ARResultsInterpretationView(ar, self.request) |
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# If a general retracted is done, rise a waring |
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if workflow.getInfoFor(ar, 'review_state') == 'sample_received': |
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allstatus = list() |
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for analysis in ar.getAnalyses(): |
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status = workflow.getInfoFor(analysis.getObject(), 'review_state') |
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if status not in ['retracted','to_be_verified','verified']: |
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allstatus = [] |
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break |
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else: |
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allstatus.append(status) |
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if len(allstatus) > 0: |
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message = "General Retract Done. Submit this AR manually." |
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self.addMessage(message, 'warning') |
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# If is a retracted AR, show the link to child AR and show a warn msg |
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if workflow.getInfoFor(ar, 'review_state') == 'invalid': |
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childar = ar.getRetest() or None |
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message = _('These results have been withdrawn and are ' |
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'listed here for trace-ability purposes. Please follow ' |
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'the link to the retest') |
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if childar: |
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message = (message + " %s.") % childar.getId() |
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else: |
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message = message + "." |
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self.addMessage(message, 'warning') |
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# If is an AR automatically generated due to a Retraction, show it's |
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# parent AR information |
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invalidated = ar.getInvalidated() |
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if invalidated: |
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message = _('This Analysis Request has been ' |
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'generated automatically due to ' |
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'the retraction of the Analysis ' |
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'Request ${retracted_request_id}.', |
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mapping={'retracted_request_id': invalidated.getId()}) |
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self.addMessage(message, 'info') |
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self.renderMessages() |
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return self.template() |
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def getAttachments(self): |
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attachments = [] |
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ar_atts = self.context.getAttachment() |
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analyses = self.context.getAnalyses(full_objects=True) |
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for att in ar_atts: |
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fsize = 0 |
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file = att.getAttachmentFile() |
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if file: |
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fsize = file.get_size() |
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if fsize < 1024: |
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fsize = '%s b' % fsize |
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else: |
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fsize = '%s Kb' % (fsize / 1024) |
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attachments.append({ |
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'keywords': att.getAttachmentKeys(), |
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'analysis': '', |
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'size': fsize, |
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'name': file.filename, |
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'Icon': file.icon, |
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'type': att.getAttachmentType().UID() if att.getAttachmentType() else '', |
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'absolute_url': att.absolute_url(), |
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'UID': att.UID(), |
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'report_option': att.getReportOption(), |
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}) |
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for analysis in analyses: |
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an_atts = analysis.getAttachment() |
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for att in an_atts: |
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file = att.getAttachmentFile() |
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fsize = file.get_size() if file else 0 |
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if fsize < 1024: |
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fsize = '%s b' % fsize |
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else: |
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fsize = '%s Kb' % (fsize / 1024) |
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attachments.append({ |
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'keywords': att.getAttachmentKeys(), |
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'analysis': analysis.Title(), |
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'size': fsize, |
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'name': file.filename, |
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'Icon': file.icon, |
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'type': att.getAttachmentType().UID() if att.getAttachmentType() else '', |
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'absolute_url': att.absolute_url(), |
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'UID': att.UID(), |
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'report_option': att.getReportOption(), |
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}) |
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return attachments |
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def addMessage(self, message, msgtype='info'): |
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self.messages.append({'message': message, 'msgtype': msgtype}) |
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def renderMessages(self): |
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for message in self.messages: |
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self.context.plone_utils.addPortalMessage( |
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message['message'], message['msgtype']) |
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def createAnalysesView(self, context, request, **kwargs): |
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return AnalysesView(context, request, **kwargs) |
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def createQCAnalyesView(self, context, request, **kwargs): |
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return QCAnalysesView(context, request, **kwargs) |
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def tabindex(self): |
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i = 0 |
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while True: |
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i += 1 |
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yield i |
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def now(self): |
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return DateTime() |
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def getMemberDiscountApplies(self): |
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client = self.context.portal_type == 'Client' and self.context or self.context.aq_parent |
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return client and client.portal_type == 'Client' and client.getMemberDiscountApplies() or False |
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def analysisprofiles(self): |
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""" Return applicable client and Lab AnalysisProfile records |
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""" |
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res = [] |
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profiles = [] |
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client = self.context.portal_type == 'AnalysisRequest' \ |
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and self.context.aq_parent or self.context |
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for profile in client.objectValues("AnalysisProfile"): |
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if isActive(profile): |
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profiles.append((profile.Title(), profile)) |
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profiles.sort(lambda x, y: cmp(x[0], y[0])) |
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res += profiles |
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profiles = [] |
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for profile in self.context.bika_setup.bika_analysisprofiles.objectValues("AnalysisProfile"): |
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if isActive(profile): |
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lab = t(_('Lab')) |
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title = to_utf8(profile.Title()) |
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profiles.append(("%s: %s" % (lab, title), profile)) |
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profiles.sort(lambda x, y: cmp(x[0], y[0])) |
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res += profiles |
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return res |
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def artemplates(self): |
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""" Return applicable client and Lab ARTemplate records |
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""" |
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res = [] |
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templates = [] |
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client = self.context.portal_type == 'AnalysisRequest' \ |
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and self.context.aq_parent or self.context |
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for template in client.objectValues("ARTemplate"): |
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if isActive(template): |
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templates.append((template.Title(), template)) |
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templates.sort(lambda x, y: cmp(x[0], y[0])) |
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res += templates |
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templates = [] |
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for template in self.context.bika_setup.bika_artemplates.objectValues("ARTemplate"): |
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if isActive(template): |
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lab = t(_('Lab')) |
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title = to_utf8(template.Title()) |
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templates.append(("%s: %s" % (lab, title), template)) |
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templates.sort(lambda x, y: cmp(x[0], y[0])) |
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res += templates |
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return res |
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def samplingdeviations(self): |
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""" SamplingDeviation vocabulary for AR Add |
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""" |
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bsc = getToolByName(self.context, 'bika_setup_catalog') |
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res = [(sd.getObject().Title(), sd.getObject()) |
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for sd in bsc(portal_type='SamplingDeviation', |
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inactive_state='active')] |
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res.sort(lambda x, y: cmp(x[0], y[0])) |
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return res |
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def sampleconditions(self): |
|
300
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|
""" SampleConditions vocabulary for AR Add |
|
301
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""" |
|
302
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bsc = getToolByName(self.context, 'bika_setup_catalog') |
|
303
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|
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res = [(sd.getObject().Title(), sd.getObject()) |
|
304
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|
|
for sd in bsc(portal_type='SampleConditions', |
|
305
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inactive_state='active')] |
|
306
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|
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res.sort(lambda x, y: cmp(x[0], y[0])) |
|
307
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return res |
|
308
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|
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|
|
309
|
|
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def containertypes(self): |
|
310
|
|
|
""" DefaultContainerType vocabulary for AR Add |
|
311
|
|
|
""" |
|
312
|
|
|
bsc = getToolByName(self.context, 'bika_setup_catalog') |
|
313
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|
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res = [(o.getObject().Title(), o.getObject()) |
|
314
|
|
|
for o in bsc(portal_type='ContainerType')] |
|
315
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|
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res.sort(lambda x, y: cmp(x[0], y[0])) |
|
316
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|
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return res |
|
317
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|
|
|
|
318
|
|
|
def SelectedServices(self): |
|
319
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|
|
""" return information about services currently selected in the |
|
320
|
|
|
context AR. |
|
321
|
|
|
[[PointOfCapture, category uid, service uid], |
|
322
|
|
|
[PointOfCapture, category uid, service uid], ...] |
|
323
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|
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""" |
|
324
|
|
|
bac = getToolByName(self.context, 'bika_analysis_catalog') |
|
325
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|
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res = [] |
|
326
|
|
|
for analysis in bac(portal_type="Analysis", |
|
327
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|
|
getRequestUID=self.context.UID()): |
|
328
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|
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analysis = analysis.getObject() |
|
329
|
|
|
res.append([analysis.getPointOfCapture(), |
|
330
|
|
|
analysis.getCategoryUID(), |
|
331
|
|
|
analysis.getServiceUID()]) |
|
332
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|
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return res |
|
333
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|
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|
|
334
|
|
|
def getRestrictedCategories(self): |
|
335
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# we are in portal_factory AR context right now |
|
336
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|
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parent = self.context.aq_parent |
|
337
|
|
|
if hasattr(parent, "getRestrictedCategories"): |
|
338
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|
|
return parent.getRestrictedCategories() |
|
339
|
|
|
return [] |
|
340
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|
|
|
|
341
|
|
|
def Categories(self): |
|
342
|
|
|
""" Dictionary keys: poc |
|
343
|
|
|
Dictionary values: (Category UID,category Title) |
|
344
|
|
|
""" |
|
345
|
|
|
bsc = getToolByName(self.context, 'bika_setup_catalog') |
|
346
|
|
|
cats = {} |
|
347
|
|
|
restricted = [u.UID() for u in self.getRestrictedCategories()] |
|
348
|
|
|
for service in bsc(portal_type="AnalysisService", |
|
349
|
|
|
inactive_state='active'): |
|
350
|
|
|
cat = (service.getCategoryUID, service.getCategoryTitle) |
|
351
|
|
|
if restricted and cat[0] not in restricted: |
|
352
|
|
|
continue |
|
353
|
|
|
poc = service.getPointOfCapture |
|
354
|
|
|
if poc not in cats: |
|
355
|
|
|
cats[poc] = [] |
|
356
|
|
|
if cat not in cats[poc]: |
|
357
|
|
|
cats[poc].append(cat) |
|
358
|
|
|
return cats |
|
359
|
|
|
|
|
360
|
|
|
def getDefaultCategories(self): |
|
361
|
|
|
# we are in portal_factory AR context right now |
|
362
|
|
|
parent = self.context.aq_parent |
|
363
|
|
|
if hasattr(parent, "getDefaultCategories"): |
|
364
|
|
|
return parent.getDefaultCategories() |
|
365
|
|
|
return [] |
|
366
|
|
|
|
|
367
|
|
|
def DefaultCategories(self): |
|
368
|
|
|
""" Used in AR add context, to return list of UIDs for |
|
369
|
|
|
automatically-expanded categories. |
|
370
|
|
|
""" |
|
371
|
|
|
cats = self.getDefaultCategories() |
|
372
|
|
|
return [cat.UID() for cat in cats] |
|
373
|
|
|
|
|
374
|
|
View Code Duplication |
def getDefaultSpec(self): |
|
|
|
|
|
|
375
|
|
|
""" Returns 'lab' or 'client' to set the initial value of the |
|
376
|
|
|
specification radios |
|
377
|
|
|
""" |
|
378
|
|
|
mt = getToolByName(self.context, 'portal_membership') |
|
379
|
|
|
pg = getToolByName(self.context, 'portal_groups') |
|
380
|
|
|
member = mt.getAuthenticatedMember() |
|
381
|
|
|
member_groups = [pg.getGroupById(group.id).getGroupName() |
|
382
|
|
|
for group in pg.getGroupsByUserId(member.id)] |
|
383
|
|
|
default_spec = ('Clients' in member_groups) and 'client' or 'lab' |
|
384
|
|
|
return default_spec |
|
385
|
|
|
|
|
386
|
|
|
def getAnalysisProfileTitle(self): |
|
387
|
|
|
"""Grab the context's current AnalysisProfile Title if any |
|
388
|
|
|
""" |
|
389
|
|
|
return self.context.getProfile() and \ |
|
390
|
|
|
self.context.getProfile().Title() or '' |
|
391
|
|
|
|
|
392
|
|
|
def getARTemplateTitle(self): |
|
393
|
|
|
"""Grab the context's current ARTemplate Title if any |
|
394
|
|
|
""" |
|
395
|
|
|
return self.context.getTemplate() and \ |
|
396
|
|
|
self.context.getTemplate().Title() or '' |
|
397
|
|
|
|
|
398
|
|
|
def get_requested_analyses(self): |
|
399
|
|
|
# |
|
400
|
|
|
# title=Get requested analyses |
|
401
|
|
|
# |
|
402
|
|
|
result = [] |
|
403
|
|
|
cats = {} |
|
404
|
|
|
for analysis in self.context.getAnalyses(full_objects=True): |
|
405
|
|
|
if analysis.review_state == 'not_requested': |
|
406
|
|
|
continue |
|
407
|
|
|
category_name = analysis.getCategoryTitle() |
|
408
|
|
|
if not category_name in cats: |
|
409
|
|
|
cats[category_name] = {} |
|
410
|
|
|
cats[category_name][analysis.Title()] = analysis |
|
411
|
|
|
cat_keys = cats.keys() |
|
412
|
|
|
cat_keys.sort(lambda x, y: cmp(x.lower(), y.lower())) |
|
413
|
|
|
for cat_key in cat_keys: |
|
414
|
|
|
analyses = cats[cat_key] |
|
415
|
|
|
analysis_keys = analyses.keys() |
|
416
|
|
|
analysis_keys.sort(lambda x, y: cmp(x.lower(), y.lower())) |
|
417
|
|
|
for analysis_key in analysis_keys: |
|
418
|
|
|
result.append(analyses[analysis_key]) |
|
419
|
|
|
return result |
|
420
|
|
|
|
|
421
|
|
|
def get_analyses_not_requested(self): |
|
422
|
|
|
# |
|
423
|
|
|
# title=Get analyses which have not been requested by the client |
|
424
|
|
|
# |
|
425
|
|
|
|
|
426
|
|
|
result = [] |
|
427
|
|
|
for analysis in self.context.getAnalyses(): |
|
428
|
|
|
if analysis.review_state == 'not_requested': |
|
429
|
|
|
result.append(analysis) |
|
430
|
|
|
return result |
|
431
|
|
|
|
|
432
|
|
|
def get_analysisrequest_verifier(self, analysisrequest): |
|
433
|
|
|
"""Get the name of the member who last verified this AR |
|
434
|
|
|
""" |
|
435
|
|
|
wtool = getToolByName(self.context, 'portal_workflow') |
|
436
|
|
|
mtool = getToolByName(self.context, 'portal_membership') |
|
437
|
|
|
verifier = None |
|
438
|
|
|
try: |
|
439
|
|
|
review_history = wtool.getInfoFor(analysisrequest, 'review_history') |
|
440
|
|
|
except: |
|
441
|
|
|
return 'access denied' |
|
442
|
|
|
review_history = [review for review in review_history if review.get('action', '')] |
|
443
|
|
|
if not review_history: |
|
444
|
|
|
return 'no history' |
|
445
|
|
|
for items in review_history: |
|
446
|
|
|
action = items.get('action') |
|
447
|
|
|
if action != 'verify': |
|
448
|
|
|
continue |
|
449
|
|
|
actor = items.get('actor') |
|
450
|
|
|
member = mtool.getMemberById(actor) |
|
451
|
|
|
if not member: |
|
452
|
|
|
verifier = actor |
|
453
|
|
|
continue |
|
454
|
|
|
verifier = member.getProperty('fullname') |
|
455
|
|
|
if verifier is None or verifier == '': |
|
456
|
|
|
verifier = actor |
|
457
|
|
|
return verifier |
|
458
|
|
|
|
|
459
|
|
|
def get_custom_fields(self): |
|
460
|
|
|
""" Returns a dictionary with custom fields to be rendered after |
|
461
|
|
|
header_table with this structure: |
|
462
|
|
|
{<fieldid>:{title:<title>, value:<html>} |
|
463
|
|
|
""" |
|
464
|
|
|
custom = {} |
|
465
|
|
|
ar = self.context |
|
466
|
|
|
workflow = getToolByName(self.context, 'portal_workflow') |
|
467
|
|
|
# If is a retracted AR, show the link to child AR and show a warn msg |
|
468
|
|
|
if workflow.getInfoFor(ar, 'review_state') == 'invalid': |
|
469
|
|
|
childar = ar.getRetest() or None |
|
470
|
|
|
anchor = childar and ("<a href='%s'>%s</a>" % (childar.absolute_url(), childar.getId())) or None |
|
471
|
|
|
if anchor: |
|
472
|
|
|
custom['ChildAR'] = { |
|
473
|
|
|
'title': t(_("AR for retested results")), |
|
474
|
|
|
'value': anchor |
|
475
|
|
|
} |
|
476
|
|
|
# If is an AR automatically generated due to a Retraction, show it's |
|
477
|
|
|
# parent AR information |
|
478
|
|
|
invalidated = ar.getInvalidated() |
|
479
|
|
|
if invalidated: |
|
480
|
|
|
anchor = "<a href='%s'>%s</a>" % (invalidated.absolute_url(), |
|
481
|
|
|
invalidated.getId()) |
|
482
|
|
|
custom['ParentAR'] = { |
|
483
|
|
|
'title': t(_("Invalid AR retested")), |
|
484
|
|
|
'value': anchor |
|
485
|
|
|
} |
|
486
|
|
|
return custom |
|
487
|
|
|
|