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# -*- coding: utf-8 -*- |
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# |
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# This file is part of SENAITE.CORE. |
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# |
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# SENAITE.CORE is free software: you can redistribute it and/or modify it under |
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# the terms of the GNU General Public License as published by the Free Software |
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# Foundation, version 2. |
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# |
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# This program is distributed in the hope that it will be useful, but WITHOUT |
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# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS |
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# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more |
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# details. |
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# |
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# You should have received a copy of the GNU General Public License along with |
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# this program; if not, write to the Free Software Foundation, Inc., 51 |
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# Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. |
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# |
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# Copyright 2018-2019 by it's authors. |
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# Some rights reserved, see README and LICENSE. |
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from bika.lims import logger |
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from bika.lims.catalog.analysis_catalog import \ |
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bika_catalog_analysis_listing_definition |
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from bika.lims.catalog.analysisrequest_catalog import \ |
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bika_catalog_analysisrequest_listing_definition |
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from bika.lims.catalog.autoimportlogs_catalog import \ |
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bika_catalog_autoimportlogs_listing_definition |
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from bika.lims.catalog.report_catalog import bika_catalog_report_definition |
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from bika.lims.catalog.worksheet_catalog import \ |
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bika_catalog_worksheet_listing_definition |
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from Products.CMFCore.utils import getToolByName |
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def getCatalogDefinitions(): |
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""" |
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Returns a dictionary with catalogs definitions. |
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""" |
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final = {} |
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analysis_request = bika_catalog_analysisrequest_listing_definition |
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analysis = bika_catalog_analysis_listing_definition |
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autoimportlogs = bika_catalog_autoimportlogs_listing_definition |
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worksheet = bika_catalog_worksheet_listing_definition |
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report = bika_catalog_report_definition |
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# Merging the catalogs |
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final.update(analysis_request) |
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final.update(analysis) |
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final.update(autoimportlogs) |
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final.update(worksheet) |
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final.update(report) |
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return final |
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def getCatalog(instance, field='UID'): |
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""" |
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Returns the catalog that stores objects of instance passed in type. |
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If an object is indexed by more than one catalog, the first match |
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will be returned. |
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:param instance: A single object |
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:type instance: ATContentType |
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:returns: The first catalog that stores the type of object passed in |
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""" |
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uid = instance.UID() |
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if 'workflow_skiplist' in instance.REQUEST and \ |
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[x for x in instance.REQUEST['workflow_skiplist'] |
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if x.find(uid) > -1]: |
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return None |
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else: |
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# grab the first catalog we are indexed in. |
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# we're only indexed in one. |
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at = getToolByName(instance, 'archetype_tool') |
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plone = instance.portal_url.getPortalObject() |
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catalog_name = instance.portal_type in at.catalog_map \ |
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and at.catalog_map[instance.portal_type][0] or 'portal_catalog' |
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catalog = getToolByName(plone, catalog_name) |
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return catalog |
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def setup_catalogs( |
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portal, catalogs_definition={}, |
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force_reindex=False, catalogs_extension={}, force_no_reindex=False): |
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""" |
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Setup the given catalogs. Redefines the map between content types and |
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catalogs and then checks the indexes and metacolumns, if one index/column |
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doesn't exist in the catalog_definition any more it will be |
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removed, otherwise, if a new index/column is found, it will be created. |
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:param portal: The Plone's Portal object |
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:param catalogs_definition: a dictionary with the following structure |
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{ |
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CATALOG_ID: { |
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'types': ['ContentType', ...], |
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'indexes': { |
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'UID': 'FieldIndex', |
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... |
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}, |
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'columns': [ |
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'Title', |
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... |
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] |
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} |
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} |
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:type catalogs_definition: dict |
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:param force_reindex: Force to reindex the catalogs even if there's no need |
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:type force_reindex: bool |
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:param force_no_reindex: Force reindexing NOT to happen. |
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:param catalog_extensions: An extension for the primary catalogs definition |
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Same dict structure as param catalogs_definition. Allows to add |
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columns and indexes required by Bika-specific add-ons. |
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:type catalog_extensions: dict |
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""" |
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# If not given catalogs_definition, use the LIMS one |
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if not catalogs_definition: |
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catalogs_definition = getCatalogDefinitions() |
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# Merge the catalogs definition of the extension with the primary |
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# catalog definition |
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definition = _merge_catalog_definitions(catalogs_definition, |
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catalogs_extension) |
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# Mapping content types in catalogs |
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# This variable will be used to clean reindex the catalog. Saves the |
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# catalogs ids |
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archetype_tool = getToolByName(portal, 'archetype_tool') |
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clean_and_rebuild = _map_content_types(archetype_tool, definition) |
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# Indexing |
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for cat_id in definition.keys(): |
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reindex = False |
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reindex = _setup_catalog( |
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portal, cat_id, definition.get(cat_id, {})) |
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if (reindex or force_reindex) and (cat_id not in clean_and_rebuild): |
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# add the catalog if it has not been added before |
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clean_and_rebuild.append(cat_id) |
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# Reindex the catalogs which needs it |
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if not force_no_reindex: |
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_cleanAndRebuildIfNeeded(portal, clean_and_rebuild) |
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return clean_and_rebuild |
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def _merge_catalog_definitions(dict1, dict2): |
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""" |
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Merges two dictionaries that represent catalogs definitions. The first |
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dictionary contains the catalogs structure by default and the second dict |
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contains additional information. Usually, the former is the Bika LIMS |
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catalogs definition and the latter is the catalogs definition of an add-on |
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The structure of each dict as follows: |
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{ |
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CATALOG_ID: { |
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'types': ['ContentType', ...], |
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'indexes': { |
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'UID': 'FieldIndex', |
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... |
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}, |
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'columns': [ |
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'Title', |
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... |
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] |
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} |
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} |
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:param dict1: The dictionary to be used as the main template (defaults) |
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:type dict1: dict |
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:param dict2: The dictionary with additional information |
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:type dict2: dict |
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:returns: A merged dict with the same structure as the dicts passed in |
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:rtype: dict |
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""" |
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if not dict2: |
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return dict1.copy() |
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outdict = {} |
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# Use dict1 as a template |
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for k, v in dict1.items(): |
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if k not in dict2 and isinstance(v, dict): |
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outdict[k] = v.copy() |
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continue |
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if k not in dict2 and isinstance(v, list): |
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outdict[k] = v[:] |
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continue |
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if k == 'indexes': |
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sdict1 = v.copy() |
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sdict2 = dict2[k].copy() |
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sdict1.update(sdict2) |
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outdict[k] = sdict1 |
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continue |
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if k in ['types', 'columns']: |
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list1 = v |
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list2 = dict2[k] |
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outdict[k] = list(set(list1 + list2)) |
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continue |
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if isinstance(v, dict): |
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sdict1 = v.copy() |
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sdict2 = dict2[k].copy() |
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outdict[k] = _merge_catalog_definitions(sdict1, sdict2) |
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# Now, add the rest of keys from dict2 that don't exist in dict1 |
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for k, v in dict2.items(): |
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if k in outdict: |
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continue |
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outdict[k] = v.copy() |
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return outdict |
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def _map_content_types(archetype_tool, catalogs_definition): |
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""" |
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Updates the mapping for content_types against catalogs |
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:archetype_tool: an archetype_tool object |
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:catalogs_definition: a dictionary like |
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{ |
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CATALOG_ID: { |
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'types': ['ContentType', ...], |
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'indexes': { |
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'UID': 'FieldIndex', |
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... |
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}, |
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'columns': [ |
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'Title', |
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... |
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] |
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} |
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} |
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""" |
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# This will be a dictionari like {'content_type':['catalog_id', ...]} |
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ct_map = {} |
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# This list will contain the atalog ids to be rebuild |
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to_reindex = [] |
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# getting the dictionary of mapped content_types in the catalog |
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map_types = archetype_tool.catalog_map |
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for catalog_id in catalogs_definition.keys(): |
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catalog_info = catalogs_definition.get(catalog_id, {}) |
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# Mapping the catalog with the defined types |
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types = catalog_info.get('types', []) |
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for t in types: |
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tmp_l = ct_map.get(t, []) |
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tmp_l.append(catalog_id) |
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ct_map[t] = tmp_l |
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# Mapping |
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for t in ct_map.keys(): |
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catalogs_list = ct_map[t] |
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# Getting the previus mapping |
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perv_catalogs_list = archetype_tool.catalog_map.get(t, []) |
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# If the mapping has changed, update it |
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set1 = set(catalogs_list) |
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set2 = set(perv_catalogs_list) |
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if set1 != set2: |
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archetype_tool.setCatalogsByType(t, catalogs_list) |
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# Adding to reindex only the catalogs that have changed |
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to_reindex = to_reindex + list(set1 - set2) + list(set2 - set1) |
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return to_reindex |
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def _setup_catalog(portal, catalog_id, catalog_definition): |
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""" |
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Given a catalog definition it updates the indexes, columns and content_type |
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definitions of the catalog. |
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:portal: the Plone site object |
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:catalog_id: a string as the catalog id |
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:catalog_definition: a dictionary like |
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{ |
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'types': ['ContentType', ...], |
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'indexes': { |
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'UID': 'FieldIndex', |
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... |
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}, |
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'columns': [ |
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'Title', |
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... |
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] |
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} |
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""" |
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reindex = False |
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catalog = getToolByName(portal, catalog_id, None) |
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if catalog is None: |
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logger.warning('Could not find the %s tool.' % (catalog_id)) |
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return False |
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# Indexes |
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indexes_ids = catalog_definition.get('indexes', {}).keys() |
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# Indexing |
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for idx in indexes_ids: |
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# The function returns if the index needs to be reindexed |
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indexed = _addIndex(catalog, idx, catalog_definition['indexes'][idx]) |
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reindex = True if indexed else reindex |
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# Removing indexes |
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in_catalog_idxs = catalog.indexes() |
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to_remove = list(set(in_catalog_idxs)-set(indexes_ids)) |
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for idx in to_remove: |
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# The function returns if the index has been deleted |
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desindexed = _delIndex(catalog, idx) |
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reindex = True if desindexed else reindex |
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# Columns |
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columns_ids = catalog_definition.get('columns', []) |
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for col in columns_ids: |
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created = _addColumn(catalog, col) |
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reindex = True if created else reindex |
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# Removing columns |
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in_catalog_cols = catalog.schema() |
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to_remove = list(set(in_catalog_cols)-set(columns_ids)) |
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for col in to_remove: |
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# The function returns if the index has been deleted |
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desindexed = _delColumn(catalog, col) |
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reindex = True if desindexed else reindex |
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return reindex |
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def _addIndex(catalog, index, indextype): |
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""" |
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This function indexes the index element into the catalog if it isn't yet. |
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:catalog: a catalog object |
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:index: an index id as string |
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:indextype: the type of the index as string |
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:returns: a boolean as True if the element has been indexed and it returns |
|
314
|
|
|
False otherwise. |
|
315
|
|
|
""" |
|
316
|
|
|
if index not in catalog.indexes(): |
|
317
|
|
|
try: |
|
318
|
|
|
if indextype == 'ZCTextIndex': |
|
319
|
|
|
addZCTextIndex(catalog, index) |
|
320
|
|
|
else: |
|
321
|
|
|
catalog.addIndex(index, indextype) |
|
322
|
|
|
logger.info('Catalog index %s added to %s.' % (index, catalog.id)) |
|
323
|
|
|
return True |
|
324
|
|
|
except: |
|
325
|
|
|
logger.error( |
|
326
|
|
|
'Catalog index %s error while adding to %s.' |
|
327
|
|
|
% (index, catalog.id)) |
|
328
|
|
|
return False |
|
329
|
|
|
|
|
330
|
|
|
|
|
331
|
|
|
def _addColumn(cat, col): |
|
332
|
|
|
""" |
|
333
|
|
|
This function adds a metadata column to the acatalog. |
|
334
|
|
|
:cat: a catalog object |
|
335
|
|
|
:col: a column id as string |
|
336
|
|
|
:returns: a boolean as True if the element has been added and |
|
337
|
|
|
False otherwise |
|
338
|
|
|
""" |
|
339
|
|
|
# First check if the metadata column already exists |
|
340
|
|
|
if col not in cat.schema(): |
|
341
|
|
|
try: |
|
342
|
|
|
cat.addColumn(col) |
|
343
|
|
|
logger.info('Column %s added to %s.' % (col, cat.id)) |
|
344
|
|
|
return True |
|
345
|
|
|
except: |
|
346
|
|
|
logger.error( |
|
347
|
|
|
'Catalog column %s error while adding to %s.' % (col, cat.id)) |
|
348
|
|
|
return False |
|
349
|
|
|
|
|
350
|
|
|
|
|
351
|
|
|
def _delIndex(catalog, index): |
|
352
|
|
|
""" |
|
353
|
|
|
This function desindexes the index element from the catalog. |
|
354
|
|
|
:catalog: a catalog object |
|
355
|
|
|
:index: an index id as string |
|
356
|
|
|
:returns: a boolean as True if the element has been desindexed and it |
|
357
|
|
|
returns False otherwise. |
|
358
|
|
|
""" |
|
359
|
|
|
if index in catalog.indexes(): |
|
360
|
|
|
try: |
|
361
|
|
|
catalog.delIndex(index) |
|
362
|
|
|
logger.info( |
|
363
|
|
|
'Catalog index %s deleted from %s.' % (index, catalog.id)) |
|
364
|
|
|
return True |
|
365
|
|
|
except: |
|
366
|
|
|
logger.error( |
|
367
|
|
|
'Catalog index %s error while deleting from %s.' |
|
368
|
|
|
% (index, catalog.id)) |
|
369
|
|
|
return False |
|
370
|
|
|
|
|
371
|
|
|
|
|
372
|
|
|
def _delColumn(cat, col): |
|
373
|
|
|
""" |
|
374
|
|
|
This function deletes a metadata column of the acatalog. |
|
375
|
|
|
:cat: a catalog object |
|
376
|
|
|
:col: a column id as string |
|
377
|
|
|
:returns: a boolean as True if the element has been removed and |
|
378
|
|
|
False otherwise |
|
379
|
|
|
""" |
|
380
|
|
|
# First check if the metadata column already exists |
|
381
|
|
|
if col in cat.schema(): |
|
382
|
|
|
try: |
|
383
|
|
|
cat.delColumn(col) |
|
384
|
|
|
logger.info('Column %s deleted from %s.' % (col, cat.id)) |
|
385
|
|
|
return True |
|
386
|
|
|
except: |
|
387
|
|
|
logger.error( |
|
388
|
|
|
'Catalog column %s error while deleting from %s.' |
|
389
|
|
|
% (col, cat.id)) |
|
390
|
|
|
return False |
|
391
|
|
|
|
|
392
|
|
|
|
|
393
|
|
|
def addZCTextIndex(catalog, index_name): |
|
394
|
|
|
|
|
395
|
|
|
if catalog is None: |
|
396
|
|
|
logger.warning('Could not find the catalog tool.' + catalog) |
|
397
|
|
|
return |
|
398
|
|
|
|
|
399
|
|
|
# Create lexicon to be able to add ZCTextIndex |
|
400
|
|
|
wordSplitter = Empty() |
|
401
|
|
|
wordSplitter.group = 'Word Splitter' |
|
402
|
|
|
wordSplitter.name = 'Unicode Whitespace splitter' |
|
403
|
|
|
caseNormalizer = Empty() |
|
404
|
|
|
caseNormalizer.group = 'Case Normalizer' |
|
405
|
|
|
caseNormalizer.name = 'Unicode Case Normalizer' |
|
406
|
|
|
stopWords = Empty() |
|
407
|
|
|
stopWords.group = 'Stop Words' |
|
408
|
|
|
stopWords.name = 'Remove listed and single char words' |
|
409
|
|
|
elem = [wordSplitter, caseNormalizer, stopWords] |
|
410
|
|
|
zc_extras = Empty() |
|
411
|
|
|
zc_extras.index_type = 'Okapi BM25 Rank' |
|
412
|
|
|
zc_extras.lexicon_id = 'Lexicon' |
|
413
|
|
|
|
|
414
|
|
|
try: |
|
415
|
|
|
catalog.manage_addProduct['ZCTextIndex'].manage_addLexicon('Lexicon', |
|
416
|
|
|
'Lexicon', elem) |
|
417
|
|
|
except: |
|
418
|
|
|
logger.warning('Could not add ZCTextIndex to '+str(catalog)) |
|
419
|
|
|
|
|
420
|
|
|
catalog.addIndex(index_name, 'ZCTextIndex', zc_extras) |
|
421
|
|
|
|
|
422
|
|
|
|
|
423
|
|
|
def _cleanAndRebuildIfNeeded(portal, cleanrebuild): |
|
424
|
|
|
""" |
|
425
|
|
|
Rebuild the given catalogs. |
|
426
|
|
|
:portal: the Plone portal object |
|
427
|
|
|
:cleanrebuild: a list with catalog ids |
|
428
|
|
|
""" |
|
429
|
|
|
for cat in cleanrebuild: |
|
430
|
|
|
catalog = getToolByName(portal, cat) |
|
431
|
|
|
if catalog: |
|
432
|
|
|
catalog.clearFindAndRebuild() |
|
433
|
|
|
else: |
|
434
|
|
|
logger.warning("Catalog '%s' not found" % cat) |
|
435
|
|
|
|
|
436
|
|
|
|
|
437
|
|
|
class Empty: |
|
438
|
|
|
""" |
|
439
|
|
|
Just a class to use when we need an object with some attributes to send to |
|
440
|
|
|
another objects an a parameter. |
|
441
|
|
|
""" |
|
442
|
|
|
pass |
|
443
|
|
|
|