senaite.core.idserver.idserver.renameAfterCreation() - Code Metrics - Inspection of "Generate unique ID for DX types on object creation..." - senaite/senaite.core - Measure and Improve Code Quality continuously with Scrutinizer

Passed

Push — 2.x ( a4d7e0...003ec3 )

by Jordi

created 2023-09-03 19:53 UTC

renameAfterCreation() A

↳ Parent: senaite.core.idserver.idserver

Complexity

Conditions

Size

Total Lines	24
Code Lines	13

Duplication

Lines	0
Ratio	0 %

Importance

Changes

Metric	Value
eloc	13
dl	0
loc	24
rs	9.75
c	0
b	0
f	0
cc	4
nop	1

# -*- coding: utf-8 -*-
#
# This file is part of SENAITE.CORE.
#
# SENAITE.CORE is free software: you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation, version 2.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program; if not, write to the Free Software Foundation, Inc., 51
# Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#
# Copyright 2018-2021 by it's authors.
# Some rights reserved, see README and LICENSE.

import itertools
import re
from datetime import datetime

import six
import transaction
from bika.lims import api
from bika.lims import logger
from bika.lims.browser.fields.uidreferencefield import \
    get_backreferences as get_backuidreferences
from bika.lims.interfaces import IAnalysisRequest
from bika.lims.interfaces import IAnalysisRequestPartition
from bika.lims.interfaces import IAnalysisRequestRetest
from bika.lims.interfaces import IAnalysisRequestSecondary
from bika.lims.interfaces import IARReport
from DateTime import DateTime
from Products.ATContentTypes.utils import DT2dt
from senaite.core.idserver.alphanumber import Alphanumber
from senaite.core.idserver.alphanumber import to_alpha
from senaite.core.interfaces import IIdServer
from senaite.core.interfaces import IIdServerTypeID
from senaite.core.interfaces import IIdServerVariables
from senaite.core.interfaces import INumberGenerator
from zope.component import getAdapters
from zope.component import getUtility
from zope.component import queryAdapter

AR_TYPES = [
    "AnalysisRequest",
    "AnalysisRequestRetest",
    "AnalysisRequestPartition",
    "AnalysisRequestSecondary",
]


def get_objects_in_sequence(brain_or_object, ctype, cref):
    """Return a list of items
    """
    obj = api.get_object(brain_or_object)
    if ctype == "backreference":
        return get_backreferences(obj, cref)
    if ctype == "contained":
        return get_contained_items(obj, cref)
    raise ValueError("Reference value is mandatory for sequence type counter")


def get_backreferences(obj, relationship):
    """Returns the backreferences
    """
    return get_backuidreferences(obj, relationship)


def get_contained_items(obj, spec):
    """Returns a list of (id, subobject) tuples of the current context.
    If 'spec' is specified, returns only objects whose meta_type match 'spec'
    """
    return obj.objectItems(spec)


def get_type_id(context, **kw):
    """Returns the type id for the context passed in, that is used for custom
    ID formatting, regardless of the real portal type of the context passed in.
    Thus, the function might return different type ids for two objects from
    same portal type (e.g AnalysisRequest). This type id is used later for
    ID server prefixes (in lowercase)
    """
    portal_type = kw.get("portal_type", None)
    if portal_type:
        return portal_type

    # Look for a get_type_id adapter
    adapter = queryAdapter(context, IIdServerTypeID)
    if adapter:
        type_id = adapter.get_type_id(**kw)
        if type_id:
            return type_id

    # Override by provided marker interface
    if IAnalysisRequestPartition.providedBy(context):
        return "AnalysisRequestPartition"
    elif IAnalysisRequestRetest.providedBy(context):
        return "AnalysisRequestRetest"
    elif IAnalysisRequestSecondary.providedBy(context):
        return "AnalysisRequestSecondary"

    return api.get_portal_type(context)


def get_suffix(id, regex="-[A-Z]{1}[0-9]{1,2}$"):
    """Get the suffix of the ID, e.g. '-R01' or '-P05'

    The current regex determines a pattern of a single uppercase character with
    at most 2 numbers following at the end of the ID as the suffix.
    """
    parts = re.findall(regex, id)
    if not parts:
        return ""
    return parts[0]


def strip_suffix(id):
    """Split off any suffix from ID

    This mimics the old behavior of the Sample ID.
    """
    suffix = get_suffix(id)
    if not suffix:
        return id
    return re.split(suffix, id)[0]


def get_retest_count(context, default=0):
    """Returns the number of retests of this AR
    """
    if not is_ar(context):
        return default

    invalidated = context.getInvalidated()

    count = 0
    while invalidated:
        count += 1
        invalidated = invalidated.getInvalidated()

    return count


def get_partition_count(context, default=0):
    """Returns the number of partitions of this AR
    """
    if not is_ar(context):
        return default

    parent = context.getParentAnalysisRequest()

    if not parent:
        return default

    return len(parent.getDescendants())


def get_secondary_count(context, default=0):
    """Returns the number of secondary ARs of this AR
    """
    if not is_ar(context):
        return default

    primary = context.getPrimaryAnalysisRequest()

    if not primary:
        return default

    return len(primary.getRawSecondaryAnalysisRequests())


def is_ar(context):
    """Checks if the context is an AR
    """
    return IAnalysisRequest.providedBy(context)


def get_config(context, **kw):
    """Fetch the config dict from the Bika Setup for the given portal_type
    """
    # get the ID formatting config
    config_map = api.get_bika_setup().getIDFormatting()

    # allow portal_type override
    portal_type = get_type_id(context, **kw)

    # check if we have a config for the given portal_type
    for config in config_map:
        if config['portal_type'].lower() == portal_type.lower():
            return config

    # return a default config
    default_config = {
        'form': '%s-{seq}' % portal_type.lower(),
        'sequence_type': 'generated',
        'prefix': '%s' % portal_type.lower(),
    }
    return default_config


def get_variables(context, **kw):
    """Prepares a dictionary of key->value pairs usable for ID formatting
    """
    # allow portal_type override
    portal_type = get_type_id(context, **kw)

    parent = kw.get("container") or api.get_parent(context)

    # The variables map hold the values that might get into the constructed id
    variables = {
        "context": context,
        "id": api.get_id(context),
        "portal_type": portal_type,
        "year": get_current_year(),
        "yymmdd": get_yymmdd(),
        "parent": parent,
        "seq": 0,
        "alpha": Alphanumber(0),
    }

    # Augment the variables map depending on the portal type
    if IAnalysisRequest.providedBy(context):
        now = DateTime()
        sampling_date = context.getSamplingDate()
        sampling_date = sampling_date and DT2dt(sampling_date) or DT2dt(now)
        date_sampled = context.getDateSampled()
        date_sampled = date_sampled and DT2dt(date_sampled) or DT2dt(now)
        test_count = 1

        variables.update({
            "clientId": context.getClientID(),
            "dateSampled": date_sampled,
            "samplingDate": sampling_date,
            "sampleType": context.getSampleType().getPrefix(),
            "test_count": test_count
        })

        # Partition
        if IAnalysisRequestPartition.providedBy(context):
            parent_ar = context.getParentAnalysisRequest()
            parent_ar_id = api.get_id(parent_ar)
            parent_base_id = strip_suffix(parent_ar_id)
            partition_count = get_partition_count(context)
            variables.update({
                "parent_analysisrequest": parent_ar,
                "parent_ar_id": parent_ar_id,
                "parent_base_id": parent_base_id,
                "partition_count": partition_count,
            })

        # Retest
        elif IAnalysisRequestRetest.providedBy(context):
            # Note: we use "parent" instead of "invalidated" for simplicity
            parent_ar = context.getInvalidated()
            parent_ar_id = api.get_id(parent_ar)
            parent_base_id = strip_suffix(parent_ar_id)
            # keep the full ID if the retracted AR is a partition
            if context.isPartition():
                parent_base_id = parent_ar_id
            retest_count = get_retest_count(context)
            test_count = test_count + retest_count
            variables.update({
                "parent_analysisrequest": parent_ar,
                "parent_ar_id": parent_ar_id,
                "parent_base_id": parent_base_id,
                "retest_count": retest_count,
                "test_count": test_count,
            })

        # Secondary
        elif IAnalysisRequestSecondary.providedBy(context):
            primary_ar = context.getPrimaryAnalysisRequest()
            primary_ar_id = api.get_id(primary_ar)
            parent_base_id = strip_suffix(primary_ar_id)
            secondary_count = get_secondary_count(context)
            variables.update({
                "parent_analysisrequest": primary_ar,
                "parent_ar_id": primary_ar_id,
                "parent_base_id": parent_base_id,
                "secondary_count": secondary_count,
            })

    elif IARReport.providedBy(context):
        variables.update({
            "clientId": parent.getClientID(),
        })

    # Look for a variables adapter
    adapter = queryAdapter(context, IIdServerVariables)
    if adapter:
        vars = adapter.get_variables(**kw)
        variables.update(vars)

    return variables


def split(string, separator="-"):
    """ split a string on the given separator
    """
    if not isinstance(string, six.string_types):
        return []
    return string.split(separator)


def to_int(thing, default=0):
    """Convert a thing to an integer
    """
    try:
        return int(thing)
    except (TypeError, ValueError):
        return default


def slice(string, separator="-", start=None, end=None):
    """Slice out a segment of a string, which is splitted on both the wildcards
    and the separator passed in, if any
    """
    # split by wildcards/keywords first
    # AR-{sampleType}-{parentId}{alpha:3a2d}
    segments = filter(None, re.split(r'(\{.+?})', string))
    # ['AR-', '{sampleType}', '-', '{parentId}', '{alpha:3a2d}']
    if separator:
        # Keep track of singleton separators as empties
        # We need to do this to prevent duplicates later, when splitting
        segments = map(lambda seg: seg!=separator and seg or "", segments)
        # ['AR-', '{sampleType}', '', '{parentId}', '{alpha:3a2d}']
        # Split each segment at the given separator
        segments = map(lambda seg: split(seg, separator), segments)
        # [['AR', ''], ['{sampleType}'], [''], ['{parentId}'], ['{alpha:3a2d}']]
        # Flatten the list
        segments = list(itertools.chain.from_iterable(segments))
        # ['AR', '', '{sampleType}', '', '{parentId}', '{alpha:3a2d}']
        # And replace empties with separator
        segments = map(lambda seg: seg!="" and seg or separator, segments)
        # ['AR', '-', '{sampleType}', '-', '{parentId}', '{alpha:3a2d}']

    # Get the start and end positions from the segments without separator
    cleaned_segments = filter(lambda seg: seg!=separator, segments)
    start_pos = to_int(start, 0)
    # Note "end" is not a position, but the number of elements to join!
    end_pos = to_int(end, len(cleaned_segments) - start_pos) + start_pos - 1

    # Map the positions against the segments with separator
    start = segments.index(cleaned_segments[start_pos])
    end = segments.index(cleaned_segments[end_pos]) + 1

    # Return all segments joined
    sliced_parts = segments[start:end]
    return "".join(sliced_parts)


def get_current_year():
    """Returns the current year as a two digit string
    """
    return DateTime().strftime("%Y")[2:]

def get_yymmdd():
    """Returns the current date in yymmdd format
    """
    return datetime.now().strftime("%y%m%d")

def make_storage_key(portal_type, prefix=None):
    """Make a storage (dict-) key for the number generator
    """
    key = portal_type.lower()
    if prefix:
        key = "{}-{}".format(key, prefix)
    return key


def get_seq_number_from_id(id, id_template, prefix, **kw):
    """Return the sequence number of the given ID
    """
    separator = kw.get("separator", "-")
    postfix = id.replace(prefix, "").strip(separator)
    postfix_segments = postfix.split(separator)
    seq_number = 0
    possible_seq_nums = filter(lambda n: n.isalnum(), postfix_segments)
    if possible_seq_nums:
        seq_number = possible_seq_nums[-1]

    # Check if this id has to be expressed as an alphanumeric number
    seq_number = get_alpha_or_number(seq_number, id_template)
    seq_number = to_int(seq_number)
    return seq_number


def get_alpha_or_number(number, template):
    """Returns an Alphanumber that represents the number passed in, expressed
    as defined in the template. Otherwise, returns the number
    """
    match = re.match(r".*\{alpha:(\d+a\d+d)\}$", template.strip())
    if match and match.groups():
        format = match.groups()[0]
        return to_alpha(number, format)
    return number


def get_counted_number(context, config, variables, **kw):
    """Compute the number for the sequence type "Counter"
    """
    # This "context" is defined by the user in the Setup and can be actually
    # anything. However, we assume it is something like "sample" or similar
    ctx = config.get("context")

    # get object behind the context name (falls back to the current context)
    obj = variables.get(ctx, context)

    # get the counter type, which is either "backreference" or "contained"
    counter_type = config.get("counter_type")
    if counter_type == "backreference":
        logger.warn("Counter type 'backreference' is obsolete! "
                    "Please use 'contained' instead. Alternatively, use "
                    "'generated' instead of 'counter' as the sequence type")

    # the counter reference is either the "relationship" for
    # "backreference" or the meta type for contained objects
    counter_reference = config.get("counter_reference")

    # This should be a list of existing items, including the current context
    # object
    seq_items = get_objects_in_sequence(obj, counter_type, counter_reference)

    number = len(seq_items)
    return number


def get_generated_number(context, config, variables, **kw):
    """Generate a new persistent number with the number generator for the
    sequence type "Generated"
    """
    # separator where to split the ID
    separator = kw.get('separator', '-')

    # allow portal_type override
    portal_type = get_type_id(context, **kw)

    # The ID format for string interpolation, e.g. WS-{seq:03d}
    id_template = config.get("form", "")

    # The split length defines where the key is splitted from the value
    split_length = config.get("split_length", 1)

    # The prefix template is the static part of the ID
    prefix_template = slice(id_template, separator=separator, end=split_length)

    # get the number generator
    number_generator = getUtility(INumberGenerator)

    # generate the key for the number generator storage
    prefix = prefix_template.format(**variables)

    # normalize out any unicode characters like Ö, É, etc. from the prefix
    prefix = api.normalize_filename(prefix)

    # The key used for the storage
    key = make_storage_key(portal_type, prefix)

    if not kw.get("dry_run", False):
        # Generate a new number
        # NOTE Even when the number exceeds the given ID sequence format,
        #      it will overflow gracefully, e.g.
        #      >>> {sampleId}-R{seq:03d}'.format(sampleId="Water", seq=999999)
        #      'Water-R999999‘
        number = number_generator.generate_number(key=key)
    else:
        # => This allows us to "preview" the next generated ID in the UI
        # TODO Show the user the next generated number somewhere in the UI
        number = number_generator.get(key, 1)

    # Return an int or Alphanumber
    return get_alpha_or_number(number, id_template)


def generateUniqueId(context, **kw):
    """ Generate pretty content IDs.
    """

    # get the config for this portal type from the system setup
    config = get_config(context, **kw)

    # get the variables map for later string interpolation
    variables = get_variables(context, **kw)

    # The new generate sequence number
    number = 0

    # get the sequence type from the global config
    sequence_type = config.get("sequence_type", "generated")

    # Sequence Type is "Counter", so we use the length of the backreferences or
    # contained objects of the evaluated "context" defined in the config
    if sequence_type in ["counter"]:
        number = get_counted_number(context, config, variables, **kw)

    # Sequence Type is "Generated", so the ID is constructed according to the
    # configured split length
    if sequence_type in ["generated"]:
        number = get_generated_number(context, config, variables, **kw)

    # store the new sequence number to the variables map for str interpolation
    if isinstance(number, Alphanumber):
        variables["alpha"] = number
    variables["seq"] = to_int(number)

    # The ID formatting template from user config, e.g. {sampleId}-R{seq:02d}
    id_template = config.get("form", "")

    # Interpolate the ID template
    try:
        new_id = id_template.format(**variables)
    except KeyError as e:
        logger.error('KeyError: {} not in id_template {}'.format(
            e, id_template))
        raise
    normalized_id = api.normalize_filename(new_id)
    logger.info("generateUniqueId: {}".format(normalized_id))

    return normalized_id


def renameAfterCreation(obj):
    """Rename the content after it was created/added
    """
    # Can't rename without a subtransaction commit when using portal_factory
    transaction.savepoint(optimistic=True)

    # The id returned should be normalized already
    new_id = None

    # Checking if an adapter exists for this content type. If yes, we will
    # get new_id from adapter.
    for name, adapter in getAdapters((obj, ), IIdServer):
        if new_id:
            logger.warn(('More than one ID Generator Adapter found for'
                         'content type -> %s') % obj.portal_type)
        new_id = adapter.generate_id(obj.portal_type)
    if not new_id:
        new_id = generateUniqueId(obj)

    # rename the object to the new id
    parent = api.get_parent(obj)
    parent.manage_renameObject(obj.id, new_id)

    return new_id


1			# -- coding: utf-8 --
2			#
3			# This file is part of SENAITE.CORE.
4			#
5			# SENAITE.CORE is free software: you can redistribute it and/or modify it under
6			# the terms of the GNU General Public License as published by the Free Software
7			# Foundation, version 2.
8			#
9			# This program is distributed in the hope that it will be useful, but WITHOUT
10			# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
11			# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
12			# details.
13			#
14			# You should have received a copy of the GNU General Public License along with
15			# this program; if not, write to the Free Software Foundation, Inc., 51
16			# Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
17			#
18			# Copyright 2018-2021 by it's authors.
19			# Some rights reserved, see README and LICENSE.
20
21			import itertools
22			import re
23			from datetime import datetime
24
25			import six
26			import transaction
27			from bika.lims import api
28			from bika.lims import logger
29			from bika.lims.browser.fields.uidreferencefield import \
30			get_backreferences as get_backuidreferences
31			from bika.lims.interfaces import IAnalysisRequest
32			from bika.lims.interfaces import IAnalysisRequestPartition
33			from bika.lims.interfaces import IAnalysisRequestRetest
34			from bika.lims.interfaces import IAnalysisRequestSecondary
35			from bika.lims.interfaces import IARReport
36			from DateTime import DateTime
37			from Products.ATContentTypes.utils import DT2dt
38			from senaite.core.idserver.alphanumber import Alphanumber
39			from senaite.core.idserver.alphanumber import to_alpha
40			from senaite.core.interfaces import IIdServer
41			from senaite.core.interfaces import IIdServerTypeID
42			from senaite.core.interfaces import IIdServerVariables
43			from senaite.core.interfaces import INumberGenerator
44			from zope.component import getAdapters
45			from zope.component import getUtility
46			from zope.component import queryAdapter
47
48			AR_TYPES = [
49			"AnalysisRequest",
50			"AnalysisRequestRetest",
51			"AnalysisRequestPartition",
52			"AnalysisRequestSecondary",
53			]
54
55
56			def get_objects_in_sequence(brain_or_object, ctype, cref):
57			"""Return a list of items
58			"""
59			obj = api.get_object(brain_or_object)
60			if ctype == "backreference":
61			return get_backreferences(obj, cref)
62			if ctype == "contained":
63			return get_contained_items(obj, cref)
64			raise ValueError("Reference value is mandatory for sequence type counter")
65
66
67			def get_backreferences(obj, relationship):
68			"""Returns the backreferences
69			"""
70			return get_backuidreferences(obj, relationship)
71
72
73			def get_contained_items(obj, spec):
74			"""Returns a list of (id, subobject) tuples of the current context.
75			If 'spec' is specified, returns only objects whose meta_type match 'spec'
76			"""
77			return obj.objectItems(spec)
78
79
80			def get_type_id(context, **kw):
81			"""Returns the type id for the context passed in, that is used for custom
82			ID formatting, regardless of the real portal type of the context passed in.
83			Thus, the function might return different type ids for two objects from
84			same portal type (e.g AnalysisRequest). This type id is used later for
85			ID server prefixes (in lowercase)
86			"""
87			portal_type = kw.get("portal_type", None)
88			if portal_type:
89			return portal_type
90
91			# Look for a get_type_id adapter
92			adapter = queryAdapter(context, IIdServerTypeID)
93			if adapter:
94			type_id = adapter.get_type_id(**kw)
95			if type_id:
96			return type_id
97
98			# Override by provided marker interface
99			if IAnalysisRequestPartition.providedBy(context):
100			return "AnalysisRequestPartition"
101			elif IAnalysisRequestRetest.providedBy(context):
102			return "AnalysisRequestRetest"
103			elif IAnalysisRequestSecondary.providedBy(context):
104			return "AnalysisRequestSecondary"
105
106			return api.get_portal_type(context)
107
108
109			def get_suffix(id, regex="-[A-Z]{1}[0-9]{1,2}$"):
110			"""Get the suffix of the ID, e.g. '-R01' or '-P05'
111
112			The current regex determines a pattern of a single uppercase character with
113			at most 2 numbers following at the end of the ID as the suffix.
114			"""
115			parts = re.findall(regex, id)
116			if not parts:
117			return ""
118			return parts[0]
119
120
121			def strip_suffix(id):
122			"""Split off any suffix from ID
123
124			This mimics the old behavior of the Sample ID.
125			"""
126			suffix = get_suffix(id)
127			if not suffix:
128			return id
129			return re.split(suffix, id)[0]
130
131
132			def get_retest_count(context, default=0):
133			"""Returns the number of retests of this AR
134			"""
135			if not is_ar(context):
136			return default
137
138			invalidated = context.getInvalidated()
139
140			count = 0
141			while invalidated:
142			count += 1
143			invalidated = invalidated.getInvalidated()
144
145			return count
146
147
148			def get_partition_count(context, default=0):
149			"""Returns the number of partitions of this AR
150			"""
151			if not is_ar(context):
152			return default
153
154			parent = context.getParentAnalysisRequest()
155
156			if not parent:
157			return default
158
159			return len(parent.getDescendants())
160
161
162			def get_secondary_count(context, default=0):
163			"""Returns the number of secondary ARs of this AR
164			"""
165			if not is_ar(context):
166			return default
167
168			primary = context.getPrimaryAnalysisRequest()
169
170			if not primary:
171			return default
172
173			return len(primary.getRawSecondaryAnalysisRequests())
174
175
176			def is_ar(context):
177			"""Checks if the context is an AR
178			"""
179			return IAnalysisRequest.providedBy(context)
180
181
182			def get_config(context, **kw):
183			"""Fetch the config dict from the Bika Setup for the given portal_type
184			"""
185			# get the ID formatting config
186			config_map = api.get_bika_setup().getIDFormatting()
187
188			# allow portal_type override
189			portal_type = get_type_id(context, **kw)
190
191			# check if we have a config for the given portal_type
192			for config in config_map:
193			if config['portal_type'].lower() == portal_type.lower():
194			return config
195
196			# return a default config
197			default_config = {
198			'form': '%s-{seq}' % portal_type.lower(),
199			'sequence_type': 'generated',
200			'prefix': '%s' % portal_type.lower(),
201			}
202			return default_config
203
204
205			def get_variables(context, **kw):
206			"""Prepares a dictionary of key->value pairs usable for ID formatting
207			"""
208			# allow portal_type override
209			portal_type = get_type_id(context, **kw)
210
211			parent = kw.get("container") or api.get_parent(context)
212
213			# The variables map hold the values that might get into the constructed id
214			variables = {
215			"context": context,
216			"id": api.get_id(context),
217			"portal_type": portal_type,
218			"year": get_current_year(),
219			"yymmdd": get_yymmdd(),
220			"parent": parent,
221			"seq": 0,
222			"alpha": Alphanumber(0),
223			}
224
225			# Augment the variables map depending on the portal type
226			if IAnalysisRequest.providedBy(context):
227			now = DateTime()
228			sampling_date = context.getSamplingDate()
229			sampling_date = sampling_date and DT2dt(sampling_date) or DT2dt(now)
230			date_sampled = context.getDateSampled()
231			date_sampled = date_sampled and DT2dt(date_sampled) or DT2dt(now)
232			test_count = 1
233
234			variables.update({
235			"clientId": context.getClientID(),
236			"dateSampled": date_sampled,
237			"samplingDate": sampling_date,
238			"sampleType": context.getSampleType().getPrefix(),
239			"test_count": test_count
240			})
241
242			# Partition
243			if IAnalysisRequestPartition.providedBy(context):
244			parent_ar = context.getParentAnalysisRequest()
245			parent_ar_id = api.get_id(parent_ar)
246			parent_base_id = strip_suffix(parent_ar_id)
247			partition_count = get_partition_count(context)
248			variables.update({
249			"parent_analysisrequest": parent_ar,
250			"parent_ar_id": parent_ar_id,
251			"parent_base_id": parent_base_id,
252			"partition_count": partition_count,
253			})
254
255			# Retest
256			elif IAnalysisRequestRetest.providedBy(context):
257			# Note: we use "parent" instead of "invalidated" for simplicity
258			parent_ar = context.getInvalidated()
259			parent_ar_id = api.get_id(parent_ar)
260			parent_base_id = strip_suffix(parent_ar_id)
261			# keep the full ID if the retracted AR is a partition
262			if context.isPartition():
263			parent_base_id = parent_ar_id
264			retest_count = get_retest_count(context)
265			test_count = test_count + retest_count
266			variables.update({
267			"parent_analysisrequest": parent_ar,
268			"parent_ar_id": parent_ar_id,
269			"parent_base_id": parent_base_id,
270			"retest_count": retest_count,
271			"test_count": test_count,
272			})
273
274			# Secondary
275			elif IAnalysisRequestSecondary.providedBy(context):
276			primary_ar = context.getPrimaryAnalysisRequest()
277			primary_ar_id = api.get_id(primary_ar)
278			parent_base_id = strip_suffix(primary_ar_id)
279			secondary_count = get_secondary_count(context)
280			variables.update({
281			"parent_analysisrequest": primary_ar,
282			"parent_ar_id": primary_ar_id,
283			"parent_base_id": parent_base_id,
284			"secondary_count": secondary_count,
285			})
286
287			elif IARReport.providedBy(context):
288			variables.update({
289			"clientId": parent.getClientID(),
290			})
291
292			# Look for a variables adapter
293			adapter = queryAdapter(context, IIdServerVariables)
294			if adapter:
295			vars = adapter.get_variables(**kw)
296			variables.update(vars)
297
298			return variables
299
300
301			def split(string, separator="-"):
302			""" split a string on the given separator
303			"""
304			if not isinstance(string, six.string_types):
305			return []
306			return string.split(separator)
307
308
309			def to_int(thing, default=0):
310			"""Convert a thing to an integer
311			"""
312			try:
313			return int(thing)
314			except (TypeError, ValueError):
315			return default
316
317
318			def slice(string, separator="-", start=None, end=None):
319			"""Slice out a segment of a string, which is splitted on both the wildcards
320			and the separator passed in, if any
321			"""
322			# split by wildcards/keywords first
323			# AR-{sampleType}-{parentId}{alpha:3a2d}
324			segments = filter(None, re.split(r'(\{.+?})', string))
325			# ['AR-', '{sampleType}', '-', '{parentId}', '{alpha:3a2d}']
326			if separator:
327			# Keep track of singleton separators as empties
328			# We need to do this to prevent duplicates later, when splitting
329			segments = map(lambda seg: seg!=separator and seg or "", segments)
330			# ['AR-', '{sampleType}', '', '{parentId}', '{alpha:3a2d}']
331			# Split each segment at the given separator
332			segments = map(lambda seg: split(seg, separator), segments)
333			# [['AR', ''], ['{sampleType}'], [''], ['{parentId}'], ['{alpha:3a2d}']]
334			# Flatten the list
335			segments = list(itertools.chain.from_iterable(segments))
336			# ['AR', '', '{sampleType}', '', '{parentId}', '{alpha:3a2d}']
337			# And replace empties with separator
338			segments = map(lambda seg: seg!="" and seg or separator, segments)
339			# ['AR', '-', '{sampleType}', '-', '{parentId}', '{alpha:3a2d}']
340
341			# Get the start and end positions from the segments without separator
342			cleaned_segments = filter(lambda seg: seg!=separator, segments)
343			start_pos = to_int(start, 0)
344			# Note "end" is not a position, but the number of elements to join!
345			end_pos = to_int(end, len(cleaned_segments) - start_pos) + start_pos - 1
346
347			# Map the positions against the segments with separator
348			start = segments.index(cleaned_segments[start_pos])
349			end = segments.index(cleaned_segments[end_pos]) + 1
350
351			# Return all segments joined
352			sliced_parts = segments[start:end]
353			return "".join(sliced_parts)
354
355
356			def get_current_year():
357			"""Returns the current year as a two digit string
358			"""
359			return DateTime().strftime("%Y")[2:]
360
361			def get_yymmdd():
362			"""Returns the current date in yymmdd format
363			"""
364			return datetime.now().strftime("%y%m%d")
365
366			def make_storage_key(portal_type, prefix=None):
367			"""Make a storage (dict-) key for the number generator
368			"""
369			key = portal_type.lower()
370			if prefix:
371			key = "{}-{}".format(key, prefix)
372			return key
373
374
375			def get_seq_number_from_id(id, id_template, prefix, **kw):
376			"""Return the sequence number of the given ID
377			"""
378			separator = kw.get("separator", "-")
379			postfix = id.replace(prefix, "").strip(separator)
380			postfix_segments = postfix.split(separator)
381			seq_number = 0
382			possible_seq_nums = filter(lambda n: n.isalnum(), postfix_segments)
383			if possible_seq_nums:
384			seq_number = possible_seq_nums[-1]
385
386			# Check if this id has to be expressed as an alphanumeric number
387			seq_number = get_alpha_or_number(seq_number, id_template)
388			seq_number = to_int(seq_number)
389			return seq_number
390
391
392			def get_alpha_or_number(number, template):
393			"""Returns an Alphanumber that represents the number passed in, expressed
394			as defined in the template. Otherwise, returns the number
395			"""
396			match = re.match(r".*\{alpha:(\d+a\d+d)\}$", template.strip())
397			if match and match.groups():
398			format = match.groups()[0]
399			return to_alpha(number, format)
400			return number
401
402
403			def get_counted_number(context, config, variables, **kw):
404			"""Compute the number for the sequence type "Counter"
405			"""
406			# This "context" is defined by the user in the Setup and can be actually
407			# anything. However, we assume it is something like "sample" or similar
408			ctx = config.get("context")
409
410			# get object behind the context name (falls back to the current context)
411			obj = variables.get(ctx, context)
412
413			# get the counter type, which is either "backreference" or "contained"
414			counter_type = config.get("counter_type")
415			if counter_type == "backreference":
416			logger.warn("Counter type 'backreference' is obsolete! "
417			"Please use 'contained' instead. Alternatively, use "
418			"'generated' instead of 'counter' as the sequence type")
419
420			# the counter reference is either the "relationship" for
421			# "backreference" or the meta type for contained objects
422			counter_reference = config.get("counter_reference")
423
424			# This should be a list of existing items, including the current context
425			# object
426			seq_items = get_objects_in_sequence(obj, counter_type, counter_reference)
427
428			number = len(seq_items)
429			return number
430
431
432			def get_generated_number(context, config, variables, **kw):
433			"""Generate a new persistent number with the number generator for the
434			sequence type "Generated"
435			"""
436			# separator where to split the ID
437			separator = kw.get('separator', '-')
438
439			# allow portal_type override
440			portal_type = get_type_id(context, **kw)
441
442			# The ID format for string interpolation, e.g. WS-{seq:03d}
443			id_template = config.get("form", "")
444
445			# The split length defines where the key is splitted from the value
446			split_length = config.get("split_length", 1)
447
448			# The prefix template is the static part of the ID
449			prefix_template = slice(id_template, separator=separator, end=split_length)
450
451			# get the number generator
452			number_generator = getUtility(INumberGenerator)
453
454			# generate the key for the number generator storage
455			prefix = prefix_template.format(**variables)
456
457			# normalize out any unicode characters like Ö, É, etc. from the prefix
458			prefix = api.normalize_filename(prefix)
459
460			# The key used for the storage
461			key = make_storage_key(portal_type, prefix)
462
463			if not kw.get("dry_run", False):
464			# Generate a new number
465			# NOTE Even when the number exceeds the given ID sequence format,
466			# it will overflow gracefully, e.g.
467			# >>> {sampleId}-R{seq:03d}'.format(sampleId="Water", seq=999999)
468			# 'Water-R999999‘
469			number = number_generator.generate_number(key=key)
470			else:
471			# => This allows us to "preview" the next generated ID in the UI
472			# TODO Show the user the next generated number somewhere in the UI
473			number = number_generator.get(key, 1)
474
475			# Return an int or Alphanumber
476			return get_alpha_or_number(number, id_template)
477
478
479			def generateUniqueId(context, **kw):
480			""" Generate pretty content IDs.
481			"""
482
483			# get the config for this portal type from the system setup
484			config = get_config(context, **kw)
485
486			# get the variables map for later string interpolation
487			variables = get_variables(context, **kw)
488
489			# The new generate sequence number
490			number = 0
491
492			# get the sequence type from the global config
493			sequence_type = config.get("sequence_type", "generated")
494
495			# Sequence Type is "Counter", so we use the length of the backreferences or
496			# contained objects of the evaluated "context" defined in the config
497			if sequence_type in ["counter"]:
498			number = get_counted_number(context, config, variables, **kw)
499
500			# Sequence Type is "Generated", so the ID is constructed according to the
501			# configured split length
502			if sequence_type in ["generated"]:
503			number = get_generated_number(context, config, variables, **kw)
504
505			# store the new sequence number to the variables map for str interpolation
506			if isinstance(number, Alphanumber):
507			variables["alpha"] = number
508			variables["seq"] = to_int(number)
509
510			# The ID formatting template from user config, e.g. {sampleId}-R{seq:02d}
511			id_template = config.get("form", "")
512
513			# Interpolate the ID template
514			try:
515			new_id = id_template.format(**variables)
516			except KeyError as e:
517			logger.error('KeyError: {} not in id_template {}'.format(
518			e, id_template))
519			raise
520			normalized_id = api.normalize_filename(new_id)
521			logger.info("generateUniqueId: {}".format(normalized_id))
522
523			return normalized_id
524
525
526			def renameAfterCreation(obj):
527			"""Rename the content after it was created/added
528			"""
529			# Can't rename without a subtransaction commit when using portal_factory
530			transaction.savepoint(optimistic=True)
531
532			# The id returned should be normalized already
533			new_id = None
534
535			# Checking if an adapter exists for this content type. If yes, we will
536			# get new_id from adapter.
537			for name, adapter in getAdapters((obj, ), IIdServer):
538			if new_id:
539			logger.warn(('More than one ID Generator Adapter found for'
540			'content type -> %s') % obj.portal_type)
541			new_id = adapter.generate_id(obj.portal_type)
542			if not new_id:
543			new_id = generateUniqueId(obj)
544
545			# rename the object to the new id
546			parent = api.get_parent(obj)
547			parent.manage_renameObject(obj.id, new_id)
548
549			return new_id
550

senaite / senaite.core

Push — 2.x ( a4d7e0...003ec3 )

renameAfterCreation() A

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