senaite /
senaite.core
| @@ 382-393 (lines=12) @@ | ||
| 379 | self.warn('Unexpected header format', numline=self._numline) |
|
| 380 | ||
| 381 | return 0 |
|
| 382 | if line.startswith('Results database:'): |
|
| 383 | if len(self._header) == 0: |
|
| 384 | self.err("No header found", numline=self._numline) |
|
| 385 | return -1 |
|
| 386 | ||
| 387 | splitted = self.splitLine(line) |
|
| 388 | if len(splitted) > 1: |
|
| 389 | self._header['Result database'] = splitted[1].replace('"', '').strip() |
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| 390 | else: |
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| 391 | self.warn('Unexpected header format', numline=self._numline) |
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| 392 | ||
| 393 | return 0 |
|
| 394 | ||
| 395 | ||
| 396 | if self.columns_name: |
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| @@ 370-381 (lines=12) @@ | ||
| 367 | ||
| 368 | return 0 |
|
| 369 | ||
| 370 | if line.startswith('Used Compound list'): |
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| 371 | if len(self._header) == 0: |
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| 372 | self.err("No header found", numline=self._numline) |
|
| 373 | return -1 |
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| 374 | ||
| 375 | splitted = self.splitLine(line) |
|
| 376 | if len(splitted) > 1: |
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| 377 | self._header['Used compound'] = splitted[1].replace('"', '').strip() |
|
| 378 | else: |
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| 379 | self.warn('Unexpected header format', numline=self._numline) |
|
| 380 | ||
| 381 | return 0 |
|
| 382 | if line.startswith('Results database:'): |
|
| 383 | if len(self._header) == 0: |
|
| 384 | self.err("No header found", numline=self._numline) |
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| @@ 357-368 (lines=12) @@ | ||
| 354 | ||
| 355 | return 0 |
|
| 356 | ||
| 357 | if line.startswith('Correction applied for film'): |
|
| 358 | if len(self._header) == 0: |
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| 359 | self.err("No header found", numline=self._numline) |
|
| 360 | return -1 |
|
| 361 | ||
| 362 | splitted = self.splitLine(line) |
|
| 363 | if len(splitted) > 1: |
|
| 364 | self._header['Correction film'] = splitted[1].replace('"', '').strip() |
|
| 365 | else: |
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| 366 | self.warn('Unexpected header format', numline=self._numline) |
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| 367 | ||
| 368 | return 0 |
|
| 369 | ||
| 370 | if line.startswith('Used Compound list'): |
|
| 371 | if len(self._header) == 0: |
|
| @@ 344-355 (lines=12) @@ | ||
| 341 | ||
| 342 | return 0 |
|
| 343 | ||
| 344 | if line.startswith('Correction applied for medium'): |
|
| 345 | if len(self._header) == 0: |
|
| 346 | self.warn('Unexpected header format', numline=self._numline) |
|
| 347 | return -1 |
|
| 348 | ||
| 349 | splitted = self.splitLine(line) |
|
| 350 | if len(splitted) > 1: |
|
| 351 | self._header['Correction medium'] = splitted[1].replace('"', '').strip() |
|
| 352 | else: |
|
| 353 | self.warn('Unexpected header format', numline=self._numline) |
|
| 354 | ||
| 355 | return 0 |
|
| 356 | ||
| 357 | if line.startswith('Correction applied for film'): |
|
| 358 | if len(self._header) == 0: |
|
| @@ 331-342 (lines=12) @@ | ||
| 328 | ||
| 329 | return 0 |
|
| 330 | ||
| 331 | if line.startswith('Weight after pressing (g)'): |
|
| 332 | if len(self._header) == 0: |
|
| 333 | self.err("No header found", numline=self._numline) |
|
| 334 | return -1 |
|
| 335 | ||
| 336 | splitted = self.splitLine(line) |
|
| 337 | if len(splitted) > 1: |
|
| 338 | self._header['Weight after pressing'] = splitted[1].replace('"', '').strip() |
|
| 339 | else: |
|
| 340 | self.warn('Unexpected header format', numline=self._numline) |
|
| 341 | ||
| 342 | return 0 |
|
| 343 | ||
| 344 | if line.startswith('Correction applied for medium'): |
|
| 345 | if len(self._header) == 0: |
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| @@ 318-329 (lines=12) @@ | ||
| 315 | ||
| 316 | return 0 |
|
| 317 | ||
| 318 | if line.startswith('Initial sample weight (g)'): |
|
| 319 | if len(self._header) == 0: |
|
| 320 | self.err("No header found", numline=self._numline) |
|
| 321 | return -1 |
|
| 322 | ||
| 323 | splitted = self.splitLine(line) |
|
| 324 | if len(splitted) > 1: |
|
| 325 | self._header['Initial sample weight'] = splitted[1].replace('"', '').strip() |
|
| 326 | else: |
|
| 327 | self.warn('Unexpected header format', numline=self._numline) |
|
| 328 | ||
| 329 | return 0 |
|
| 330 | ||
| 331 | if line.startswith('Weight after pressing (g)'): |
|
| 332 | if len(self._header) == 0: |
|
| @@ 305-316 (lines=12) @@ | ||
| 302 | ||
| 303 | return 0 |
|
| 304 | ||
| 305 | if line.startswith('Sample type'): |
|
| 306 | if len(self._header) == 0: |
|
| 307 | self.err("No header found", numline=self._numline) |
|
| 308 | return -1 |
|
| 309 | ||
| 310 | splitted = self.splitLine(line) |
|
| 311 | if len(splitted) > 1: |
|
| 312 | self._header['Sample type'] = splitted[1].strip() |
|
| 313 | else: |
|
| 314 | self.warn('Unexpected header format', numline=self._numline) |
|
| 315 | ||
| 316 | return 0 |
|
| 317 | ||
| 318 | if line.startswith('Initial sample weight (g)'): |
|
| 319 | if len(self._header) == 0: |
|
| @@ 292-303 (lines=12) @@ | ||
| 289 | ||
| 290 | return 0 |
|
| 291 | ||
| 292 | if line.startswith('Normalised to'): |
|
| 293 | if len(self._header) == 0: |
|
| 294 | self.err("No header found", numline=self._numline) |
|
| 295 | return -1 |
|
| 296 | ||
| 297 | splitted = self.splitLine(line) |
|
| 298 | if len(splitted) > 1: |
|
| 299 | self._header['Normalized'] = splitted[1].replace('"', '').strip() |
|
| 300 | else: |
|
| 301 | self.warn('Unexpected header format', numline=self._numline) |
|
| 302 | ||
| 303 | return 0 |
|
| 304 | ||
| 305 | if line.startswith('Sample type'): |
|
| 306 | if len(self._header) == 0: |
|
| @@ 279-290 (lines=12) @@ | ||
| 276 | ||
| 277 | return 0 |
|
| 278 | ||
| 279 | if line.startswith('Sum before normalization'): |
|
| 280 | if len(self._header) == 0: |
|
| 281 | self.err("No header found", numline=self._numline) |
|
| 282 | return -1 |
|
| 283 | ||
| 284 | splitted = self.splitLine(line) |
|
| 285 | if len(splitted) > 1: |
|
| 286 | self._header['Sum'] = splitted[1].replace('"', '').strip() |
|
| 287 | else: |
|
| 288 | self.warn('Unexpected header format', numline=self._numline) |
|
| 289 | ||
| 290 | return 0 |
|
| 291 | ||
| 292 | if line.startswith('Normalised to'): |
|
| 293 | if len(self._header) == 0: |
|
| @@ 254-265 (lines=12) @@ | ||
| 251 | self.warn('Unexpected header format', numline=self._numline) |
|
| 252 | return 1 |
|
| 253 | # Save each header field (that we know) and its own value in the dict |
|
| 254 | if line.startswith('R.M.S.'): |
|
| 255 | ||
| 256 | if len(self._header) == 0: |
|
| 257 | self.err("No header found", numline=self._numline) |
|
| 258 | return -1 |
|
| 259 | ||
| 260 | splitted = self.splitLine(line) |
|
| 261 | if len(splitted) > 1: |
|
| 262 | self._header['R.M.S.'] = splitted[1].replace('"', '').strip() |
|
| 263 | else: |
|
| 264 | self.warn('Unexpected header format', numline=self._numline) |
|
| 265 | return 0 |
|
| 266 | ||
| 267 | if line.startswith('Result status'): |
|
| 268 | if len(self._header) == 0: |
|
| @@ 267-277 (lines=11) @@ | ||
| 264 | self.warn('Unexpected header format', numline=self._numline) |
|
| 265 | return 0 |
|
| 266 | ||
| 267 | if line.startswith('Result status'): |
|
| 268 | if len(self._header) == 0: |
|
| 269 | self.err("No header found", numline=self._numline) |
|
| 270 | ||
| 271 | splitted = self.splitLine(line) |
|
| 272 | if len(splitted) > 1: |
|
| 273 | self._header['Result status'] = splitted[1].replace('"', '').strip() |
|
| 274 | else: |
|
| 275 | self.warn('Unexpected header format', numline=self._numline) |
|
| 276 | ||
| 277 | return 0 |
|
| 278 | ||
| 279 | if line.startswith('Sum before normalization'): |
|
| 280 | if len(self._header) == 0: |
|
| @@ 95-105 (lines=11) @@ | ||
| 92 | self.warn('Unexpected header format', numline=self._numline) |
|
| 93 | return 0 |
|
| 94 | ||
| 95 | if line.startswith('Number of'): |
|
| 96 | if len(self._header) == 0: |
|
| 97 | self.err("No header found", numline=self._numline) |
|
| 98 | return -1 |
|
| 99 | ||
| 100 | splitted = self.splitLine(line) |
|
| 101 | if len(splitted) > 1: |
|
| 102 | self._header['NumResults'] = splitted[1].replace('"', '').strip() |
|
| 103 | else: |
|
| 104 | self.warn('Unexpected header format', numline=self._numline) |
|
| 105 | return 0 |
|
| 106 | ||
| 107 | if line.startswith('Seq.'): |
|
| 108 | if len(self._header) == 0: |
|
| @@ 83-93 (lines=11) @@ | ||
| 80 | self._header['Quantitative'] = splitted[1] |
|
| 81 | return 1 |
|
| 82 | ||
| 83 | if line.startswith('Selected archive'): |
|
| 84 | if len(self._header) == 0: |
|
| 85 | self.err("No header found", numline=self._numline) |
|
| 86 | return -1 |
|
| 87 | ||
| 88 | splitted = self.splitLine(line) |
|
| 89 | if len(splitted) > 1: |
|
| 90 | self._header['Archive'] = splitted[1].replace('"', '').strip() |
|
| 91 | else: |
|
| 92 | self.warn('Unexpected header format', numline=self._numline) |
|
| 93 | return 0 |
|
| 94 | ||
| 95 | if line.startswith('Number of'): |
|
| 96 | if len(self._header) == 0: |
|
