Code Duplication - senaite/senaite.core - Measure and Improve Code Quality continuously with Scrutinizer

Code Duplication Length = 49-49 lines in 2 locations

bika/lims/exportimport/instruments/taqman/dna212bs/init.py 1 location


    AnalysisResultsImporter, InstrumentCSVResultsFileParser


class TaqMan96DNA212BSCSVParser(InstrumentCSVResultsFileParser):
    def __init__(self, csv):
        InstrumentCSVResultsFileParser.__init__(self, csv)
        self._columns = []  # The different columns names
        self._values = {}  # The analysis services from the same resid
        self._resid = ''  # A stored resid
        self._rownum = None
        self._end_header = False

    def _parseline(self, line):
        sline = line.split(',')
        if len(sline) > 0 and not self._end_header:
            self._columns = sline
            self._end_header = True
            return 0
        elif sline > 0 and self._end_header:
            self.parse_data_line(sline)
        else:
            self.err("Unexpected data format", numline=self._numline)
            return -1

    def parse_data_line(self, sline):
        """
        Parses the data line and builds the dictionary.
        :param sline: a split data line to parse
        :returns: the number of rows to jump and parse the next data line or return the code error -1
        """
        # if there are less values founded than headers, it's an error
        if len(sline) != len(self._columns):
            self.err("One data line has the wrong number of items")
            return -1
        #print self._columns
        rawdict = {}
        for idx, result in enumerate(sline):
            rawdict[self._columns[idx]] = result
        # Getting key values
        resid = rawdict['Sample ID']
        del rawdict['Sample ID']
        testname = rawdict['Test']
        del rawdict['Test']

        # Building the new dict
        rawdict['DefaultResult'] = 'Result'
        rawdict['Remarks'] = rawdict['Comment']
        del rawdict['Comment']
        print rawdict

        self._addRawResult(resid, {testname: rawdict}, False)
        return 0


class TaqMan96DNA212BSImporter(AnalysisResultsImporter):

bika/lims/exportimport/instruments/facscalibur/calibur/init.py 1 location


    AnalysisResultsImporter, InstrumentCSVResultsFileParser


class FacsCaliburParser(InstrumentCSVResultsFileParser):
    def __init__(self, csv):
        InstrumentCSVResultsFileParser.__init__(self, csv)
        self._columns = []  # The different columns names
        self._values = {}  # The analysis services from the same resid
        self._resid = ''  # A stored resid
        self._rownum = None
        self._end_header = False

    def _parseline(self, line):
        sline = line.split(',')
        if len(sline) > 0 and not self._end_header:
            self._columns = sline
            self._end_header = True
            return 0
        elif sline > 0 and self._end_header:
            self.parse_data_line(sline)
        else:
            self.err("Unexpected data format", numline=self._numline)
            return -1

    def parse_data_line(self, sline):
        """
        Parses the data line and builds the dictionary.
        :param sline: a split data line to parse
        :returns: the number of rows to jump and parse the next data line or return the code error -1
        """
        # if there are less values founded than headers, it's an error
        if len(sline) != len(self._columns):
            self.err("One data line has the wrong number of items")
            return -1
        #print self._columns
        rawdict = {}
        for idx, result in enumerate(sline):
            rawdict[self._columns[idx]] = result
        # Getting key values
        resid = rawdict['Sample ID']
        del rawdict['Sample ID']
        testname = rawdict['Test']
        del rawdict['Test']

        # Building the new dict
        rawdict['DefaultResult'] = 'Result'
        rawdict['Remarks'] = rawdict['Comment']
        del rawdict['Comment']
        print rawdict

        self._addRawResult(resid, {testname: rawdict}, False)
        return 0


class FacsCaliburImporter(AnalysisResultsImporter):

		@@ 15-63 (lines=49) @@
12		AnalysisResultsImporter, InstrumentCSVResultsFileParser
13
14
15		class TaqMan96DNA212BSCSVParser(InstrumentCSVResultsFileParser):
16		def __init__(self, csv):
17		InstrumentCSVResultsFileParser.__init__(self, csv)
18		self._columns = [] # The different columns names
19		self._values = {} # The analysis services from the same resid
20		self._resid = '' # A stored resid
21		self._rownum = None
22		self._end_header = False
23
24		def _parseline(self, line):
25		sline = line.split(',')
26		if len(sline) > 0 and not self._end_header:
27		self._columns = sline
28		self._end_header = True
29		return 0
30		elif sline > 0 and self._end_header:
31		self.parse_data_line(sline)
32		else:
33		self.err("Unexpected data format", numline=self._numline)
34		return -1
35
36		def parse_data_line(self, sline):
37		"""
38		Parses the data line and builds the dictionary.
39		:param sline: a split data line to parse
40		:returns: the number of rows to jump and parse the next data line or return the code error -1
41		"""
42		# if there are less values founded than headers, it's an error
43		if len(sline) != len(self._columns):
44		self.err("One data line has the wrong number of items")
45		return -1
46		#print self._columns
47		rawdict = {}
48		for idx, result in enumerate(sline):
49		rawdict[self._columns[idx]] = result
50		# Getting key values
51		resid = rawdict['Sample ID']
52		del rawdict['Sample ID']
53		testname = rawdict['Test']
54		del rawdict['Test']
55
56		# Building the new dict
57		rawdict['DefaultResult'] = 'Result'
58		rawdict['Remarks'] = rawdict['Comment']
59		del rawdict['Comment']
60		print rawdict
61
62		self._addRawResult(resid, {testname: rawdict}, False)
63		return 0
64
65
66		class TaqMan96DNA212BSImporter(AnalysisResultsImporter):

		@@ 15-63 (lines=49) @@
12		AnalysisResultsImporter, InstrumentCSVResultsFileParser
13
14
15		class FacsCaliburParser(InstrumentCSVResultsFileParser):
16		def __init__(self, csv):
17		InstrumentCSVResultsFileParser.__init__(self, csv)
18		self._columns = [] # The different columns names
19		self._values = {} # The analysis services from the same resid
20		self._resid = '' # A stored resid
21		self._rownum = None
22		self._end_header = False
23
24		def _parseline(self, line):
25		sline = line.split(',')
26		if len(sline) > 0 and not self._end_header:
27		self._columns = sline
28		self._end_header = True
29		return 0
30		elif sline > 0 and self._end_header:
31		self.parse_data_line(sline)
32		else:
33		self.err("Unexpected data format", numline=self._numline)
34		return -1
35
36		def parse_data_line(self, sline):
37		"""
38		Parses the data line and builds the dictionary.
39		:param sline: a split data line to parse
40		:returns: the number of rows to jump and parse the next data line or return the code error -1
41		"""
42		# if there are less values founded than headers, it's an error
43		if len(sline) != len(self._columns):
44		self.err("One data line has the wrong number of items")
45		return -1
46		#print self._columns
47		rawdict = {}
48		for idx, result in enumerate(sline):
49		rawdict[self._columns[idx]] = result
50		# Getting key values
51		resid = rawdict['Sample ID']
52		del rawdict['Sample ID']
53		testname = rawdict['Test']
54		del rawdict['Test']
55
56		# Building the new dict
57		rawdict['DefaultResult'] = 'Result'
58		rawdict['Remarks'] = rawdict['Comment']
59		del rawdict['Comment']
60		print rawdict
61
62		self._addRawResult(resid, {testname: rawdict}, False)
63		return 0
64
65
66		class FacsCaliburImporter(AnalysisResultsImporter):

senaite / senaite.core

Code Duplication Length = 49-49 lines in 2 locations

bika/lims/exportimport/instruments/taqman/dna212bs/__init__.py 1 location

bika/lims/exportimport/instruments/facscalibur/calibur/__init__.py 1 location

bika/lims/exportimport/instruments/taqman/dna212bs/init.py 1 location

bika/lims/exportimport/instruments/facscalibur/calibur/init.py 1 location