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# -*- coding: utf-8 -*- |
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# |
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# This file is part of SENAITE.CORE. |
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# |
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# SENAITE.CORE is free software: you can redistribute it and/or modify it under |
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# the terms of the GNU General Public License as published by the Free Software |
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# Foundation, version 2. |
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# |
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# This program is distributed in the hope that it will be useful, but WITHOUT |
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# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS |
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# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more |
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# details. |
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# |
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# You should have received a copy of the GNU General Public License along with |
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# this program; if not, write to the Free Software Foundation, Inc., 51 |
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# Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. |
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# |
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# Copyright 2018-2025 by it's authors. |
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# Some rights reserved, see README and LICENSE. |
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import collections |
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from string import Template |
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from bika.lims import _ |
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from bika.lims import api |
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from bika.lims.api.security import check_permission |
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from bika.lims.config import PRIORITIES |
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from bika.lims.interfaces import IBatch |
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from bika.lims.interfaces import IClient |
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from bika.lims.utils import get_image |
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from bika.lims.utils import get_link_for |
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from bika.lims.utils import get_progress_bar_html |
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from bika.lims.utils import getUsers |
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from DateTime import DateTime |
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from plone.memoize import view |
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from senaite.app.listing import ListingView |
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from senaite.core.api import dtime |
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from senaite.core.catalog import SAMPLE_CATALOG |
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from senaite.core.i18n import translate as t |
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from senaite.core.interfaces import ISamples |
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from senaite.core.interfaces import ISamplesView |
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from senaite.core.permissions import AddAnalysisRequest |
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from senaite.core.permissions import TransitionSampleSample |
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from senaite.core.permissions.worksheet import can_add_worksheet |
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from zope.interface import implementer |
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ANALYSES_NUM_TPL = Template("$not_submitted/$to_be_verified/$verified/$total") |
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ANALYSES_NUM_TPL_HTML = Template("""<div class="d-flex flex-row"> |
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<span data-toggle="tooltip" |
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title="$not_submitted_title" |
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class="text-secondary cursor-pointer"> |
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$not_submitted |
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</span> |
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<span class="separator">/</span> |
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<span data-toggle="tooltip" |
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title="$to_be_verified_title" |
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class="text-state-to_be_verified cursor-pointer"> |
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$to_be_verified |
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</span> |
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<span class="separator">/</span> |
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<span data-toggle="tooltip" |
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title="$verified_title" |
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class="text-state-verified cursor-pointer"> |
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$verified |
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</span> |
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<span class="separator">/</span> |
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<span data-toggle="tooltip" |
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title="$total_title" |
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class="text-black cursor-pointer"> |
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$total |
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</span> |
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</div> |
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""") |
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@implementer(ISamplesView) |
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class SamplesView(ListingView): |
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"""Listing View for Samples (AnalysisRequest content type) in the System |
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""" |
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def __init__(self, context, request): |
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super(SamplesView, self).__init__(context, request) |
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self.catalog = SAMPLE_CATALOG |
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self.contentFilter = { |
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"sort_on": "created", |
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"sort_order": "descending", |
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"isRootAncestor": True, # only root ancestors |
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} |
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self.title = self.context.translate(_("Samples")) |
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self.description = "" |
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self.show_select_column = True |
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self.form_id = "samples" |
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self.context_actions = {} |
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self.icon = "{}{}".format( |
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self.portal_url, "/senaite_theme/icon/sample") |
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self.url = api.get_url(self.context) |
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# Toggle some columns if the sampling workflow is enabled |
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sampling_enabled = api.get_setup().getSamplingWorkflowEnabled() |
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now = DateTime().strftime("%Y-%m-%d %H:%M") |
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self.columns = collections.OrderedDict(( |
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("Priority", { |
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"title": "", |
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"index": "getPrioritySortkey", |
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"sortable": True, }), |
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("Progress", { |
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"title": _("Progress"), |
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"index": "getProgress", |
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"sortable": True, |
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"toggle": True}), |
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("getId", { |
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"title": _("Sample ID"), |
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"attr": "getId", |
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"replace_url": "getURL", |
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"index": "getId"}), |
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("getClientOrderNumber", { |
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"title": _("Client Order"), |
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"sortable": True, |
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"toggle": False}), |
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("Creator", { |
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"title": _("Creator"), |
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"index": "Creator", |
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"sortable": True, |
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"toggle": True}), |
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("Created", { |
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"title": _("Date Registered"), |
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"index": "created", |
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"toggle": False}), |
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("SamplingDate", { |
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"title": _("Expected Sampling Date"), |
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"index": "getSamplingDate", |
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"toggle": sampling_enabled}), |
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("getDateSampled", { |
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"title": _("Date Sampled"), |
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"toggle": True, |
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"type": "datetime", |
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"max": now, |
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"sortable": True}), |
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("getDatePreserved", { |
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"title": _("Date Preserved"), |
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"toggle": False, |
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"type": "datetime", |
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"max": now, |
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"sortable": False}), # no datesort without index |
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("getDateReceived", { |
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"title": _("Date Received"), |
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"toggle": False}), |
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("getDueDate", { |
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"title": _("Due Date"), |
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"toggle": False}), |
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("getDateVerified", { |
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"title": _("Date Verified"), |
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"input_width": "10", |
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"toggle": False}), |
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("getDatePublished", { |
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"title": _("Date Published"), |
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"toggle": False}), |
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("BatchID", { |
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"title": _("Batch ID"), |
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"index": "getBatchID", |
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"sortable": True, |
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"toggle": False}), |
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("Client", { |
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"title": _("Client"), |
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"index": "getClientTitle", |
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"attr": "getClientTitle", |
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"replace_url": "getClientURL", |
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"toggle": True}), |
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("ClientID", { |
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"title": _("Client ID"), |
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"index": "getClientID", |
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"attr": "getClientID", |
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"replace_url": "getClientURL", |
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"toggle": True}), |
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("Province", { |
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"title": _("Province"), |
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"sortable": True, |
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"index": "getProvince", |
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"attr": "getProvince", |
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"toggle": False}), |
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("District", { |
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"title": _("District"), |
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"sortable": True, |
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"index": "getDistrict", |
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"attr": "getDistrict", |
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"toggle": False}), |
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("getClientReference", { |
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"title": _("Client Ref"), |
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"sortable": True, |
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"index": "getClientReference", |
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"toggle": False}), |
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("getClientSampleID", { |
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"title": _("Client SID"), |
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"toggle": False}), |
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("ClientContact", { |
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"title": _("Contact"), |
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"sortable": False, |
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"toggle": False}), |
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("getSampleTypeTitle", { |
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"title": _("Sample Type"), |
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"sortable": True, |
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"toggle": True}), |
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("getSamplePointTitle", { |
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"title": _("Sample Point"), |
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"sortable": True, |
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"index": "getSamplePointTitle", |
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"toggle": False}), |
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("getStorageLocation", { |
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"title": _("Storage Location"), |
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"sortable": True, |
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"index": "getStorageLocationTitle", |
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"toggle": False}), |
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("SamplingDeviation", { |
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"title": _("Sampling Deviation"), |
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"sortable": True, |
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"index": "getSamplingDeviationTitle", |
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"toggle": False}), |
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("getSampler", { |
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"title": _("Sampler"), |
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"toggle": sampling_enabled}), |
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("getPreserver", { |
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"title": _("Preserver"), |
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"sortable": False, |
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"toggle": False}), |
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("getProfilesTitle", { |
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"title": _("Profile"), |
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"sortable": False, |
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"toggle": False}), |
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("getAnalysesNum", { |
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"title": _("Number of Analyses"), |
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"alt": _("Open / To be verified / Verified / Total"), |
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"sortable": True, |
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"index": "getAnalysesNum", |
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"toggle": False}), |
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("getTemplateTitle", { |
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"title": _("Template"), |
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"sortable": True, |
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"index": "getTemplateTitle", |
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"toggle": False}), |
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("Printed", { |
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"title": _("Printed"), |
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"sortable": False, |
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"index": "getPrinted", |
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"toggle": False}), |
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("state_title", { |
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"title": _("State"), |
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"sortable": True, |
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"index": "review_state"}), |
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)) |
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# custom print transition |
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print_stickers = { |
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"id": "print_stickers", |
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"title": _("Print stickers"), |
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"url": "{}/workflow_action?action=print_stickers".format(self.url) |
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} |
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self.review_states = [ |
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{ |
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"id": "default", |
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"title": _("Active"), |
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"contentFilter": { |
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"review_state": ( |
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"sample_registered", |
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"scheduled_sampling", |
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"to_be_sampled", |
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"sample_due", |
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"sample_received", |
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"to_be_preserved", |
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"to_be_verified", |
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"verified", |
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), |
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"sort_on": "created", |
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"sort_order": "descending", |
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}, |
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"custom_transitions": [print_stickers], |
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"columns": self.columns.keys(), |
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}, { |
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"id": "to_be_sampled", |
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"title": _("To Be Sampled"), |
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"contentFilter": { |
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"review_state": ("to_be_sampled",), |
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"sort_on": "created", |
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"sort_order": "descending"}, |
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"custom_transitions": [print_stickers], |
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"columns": self.columns.keys() |
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}, { |
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"id": "to_be_preserved", |
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"title": _("To Be Preserved"), |
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"contentFilter": { |
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"review_state": ("to_be_preserved",), |
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"sort_on": "created", |
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"sort_order": "descending", |
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}, |
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"custom_transitions": [print_stickers], |
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"columns": self.columns.keys(), |
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}, { |
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"id": "scheduled_sampling", |
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"title": _("Scheduled sampling"), |
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"contentFilter": { |
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"review_state": ("scheduled_sampling",), |
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"sort_on": "created", |
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"sort_order": "descending", |
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}, |
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"custom_transitions": [print_stickers], |
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"columns": self.columns.keys(), |
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}, { |
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"id": "sample_due", |
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"title": _("Due"), |
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"contentFilter": { |
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"review_state": ( |
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"to_be_sampled", |
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"to_be_preserved", |
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"sample_due"), |
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"sort_on": "created", |
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"sort_order": "descending"}, |
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"custom_transitions": [print_stickers], |
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"columns": self.columns.keys(), |
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}, { |
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"id": "sample_received", |
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"title": _("Received"), |
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"contentFilter": { |
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"review_state": "sample_received", |
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"sort_on": "created", |
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"sort_order": "descending", |
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}, |
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"custom_transitions": [print_stickers], |
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"columns": self.columns.keys(), |
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}, { |
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"id": "to_be_verified", |
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"title": _("To be verified"), |
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"contentFilter": { |
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"review_state": "to_be_verified", |
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"sort_on": "created", |
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"sort_order": "descending", |
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}, |
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"custom_transitions": [print_stickers], |
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"columns": self.columns.keys(), |
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}, { |
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"id": "verified", |
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"title": _("Verified"), |
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"contentFilter": { |
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"review_state": "verified", |
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"sort_on": "created", |
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"sort_order": "descending", |
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}, |
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"custom_transitions": [print_stickers], |
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"columns": self.columns.keys(), |
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}, { |
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"id": "published", |
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"title": _("Published"), |
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"contentFilter": { |
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"review_state": ("published"), |
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"sort_on": "created", |
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"sort_order": "descending", |
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}, |
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"custom_transitions": [], |
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"columns": self.columns.keys(), |
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}, { |
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|
|
"id": "dispatched", |
367
|
|
|
"title": _("Dispatched"), |
368
|
|
|
"flat_listing": True, |
369
|
|
|
"confirm_transitions": ["restore"], |
370
|
|
|
"contentFilter": { |
371
|
|
|
"review_state": ("dispatched"), |
372
|
|
|
"sort_on": "created", |
373
|
|
|
"sort_order": "descending", |
374
|
|
|
}, |
375
|
|
|
"custom_transitions": [], |
376
|
|
|
"columns": self.columns.keys(), |
377
|
|
|
}, { |
378
|
|
|
"id": "cancelled", |
379
|
|
|
"title": _("Cancelled"), |
380
|
|
|
"contentFilter": { |
381
|
|
|
"review_state": "cancelled", |
382
|
|
|
"sort_on": "created", |
383
|
|
|
"sort_order": "descending", |
384
|
|
|
}, |
385
|
|
|
"custom_transitions": [], |
386
|
|
|
"columns": self.columns.keys(), |
387
|
|
|
}, { |
388
|
|
|
"id": "invalid", |
389
|
|
|
"title": _("Invalid"), |
390
|
|
|
"contentFilter": { |
391
|
|
|
"review_state": "invalid", |
392
|
|
|
"sort_on": "created", |
393
|
|
|
"sort_order": "descending", |
394
|
|
|
}, |
395
|
|
|
"custom_transitions": [print_stickers], |
396
|
|
|
"columns": self.columns.keys(), |
397
|
|
|
}, { |
398
|
|
|
"id": "all", |
399
|
|
|
"title": _("All"), |
400
|
|
|
"contentFilter": { |
401
|
|
|
"sort_on": "created", |
402
|
|
|
"sort_order": "descending", |
403
|
|
|
}, |
404
|
|
|
"custom_transitions": [print_stickers], |
405
|
|
|
"columns": self.columns.keys(), |
406
|
|
|
}, { |
407
|
|
|
"id": "rejected", |
408
|
|
|
"title": _("Rejected"), |
409
|
|
|
"contentFilter": { |
410
|
|
|
"review_state": "rejected", |
411
|
|
|
"sort_on": "created", |
412
|
|
|
"sort_order": "descending", |
413
|
|
|
}, |
414
|
|
|
"custom_transitions": [print_stickers], |
415
|
|
|
"columns": self.columns.keys(), |
416
|
|
|
}, { |
417
|
|
|
"id": "assigned", |
418
|
|
|
"title": get_image("assigned.png", |
419
|
|
|
title=t(_("Assigned"))), |
420
|
|
|
"contentFilter": { |
421
|
|
|
"assigned_state": "assigned", |
422
|
|
|
"review_state": ("sample_received",), |
423
|
|
|
"sort_on": "created", |
424
|
|
|
"sort_order": "descending", |
425
|
|
|
}, |
426
|
|
|
"custom_transitions": [print_stickers], |
427
|
|
|
"columns": self.columns.keys(), |
428
|
|
|
}, { |
429
|
|
|
"id": "unassigned", |
430
|
|
|
"title": get_image("unassigned.png", |
431
|
|
|
title=t(_("Unsassigned"))), |
432
|
|
|
"contentFilter": { |
433
|
|
|
"assigned_state": "unassigned", |
434
|
|
|
"review_state": ( |
435
|
|
|
"sample_received", |
436
|
|
|
), |
437
|
|
|
"sort_on": "created", |
438
|
|
|
"sort_order": "descending", |
439
|
|
|
}, |
440
|
|
|
"custom_transitions": [print_stickers], |
441
|
|
|
"columns": self.columns.keys(), |
442
|
|
|
}, { |
443
|
|
|
"id": "late", |
444
|
|
|
"title": get_image("late.png", |
445
|
|
|
title=t(_("Late"))), |
446
|
|
|
"contentFilter": { |
447
|
|
|
# Query only for unpublished ARs that are late |
448
|
|
|
"review_state": ( |
449
|
|
|
"sample_received", |
450
|
|
|
"to_be_verified", |
451
|
|
|
"verified", |
452
|
|
|
), |
453
|
|
|
"getDueDate": { |
454
|
|
|
"query": DateTime(), |
455
|
|
|
"range": "max", |
456
|
|
|
}, |
457
|
|
|
"sort_on": "created", |
458
|
|
|
"sort_order": "descending", |
459
|
|
|
}, |
460
|
|
|
"custom_transitions": [print_stickers], |
461
|
|
|
"columns": self.columns.keys(), |
462
|
|
|
} |
463
|
|
|
] |
464
|
|
|
|
465
|
|
|
def update(self): |
466
|
|
|
"""Called before the listing renders |
467
|
|
|
""" |
468
|
|
|
super(SamplesView, self).update() |
469
|
|
|
|
470
|
|
|
self.workflow = api.get_tool("portal_workflow") |
471
|
|
|
self.member = self.mtool.getAuthenticatedMember() |
472
|
|
|
self.roles = self.member.getRoles() |
473
|
|
|
|
474
|
|
|
# Remove unnecessary filters |
475
|
|
|
self.purge_review_states() |
476
|
|
|
|
477
|
|
|
# Remove unnecessary columns |
478
|
|
|
self.purge_columns() |
479
|
|
|
|
480
|
|
|
# Additional custom transitions |
481
|
|
|
self.add_custom_transitions() |
482
|
|
|
|
483
|
|
|
def before_render(self): |
484
|
|
|
"""Before template render hook |
485
|
|
|
""" |
486
|
|
|
super(SamplesView, self).before_render() |
487
|
|
|
# remove query filter for root samples when listing is flat |
488
|
|
|
if self.flat_listing: |
489
|
|
|
self.contentFilter.pop("isRootAncestor", None) |
490
|
|
|
|
491
|
|
|
def folderitem(self, obj, item, index): |
492
|
|
|
# Additional info from AnalysisRequest to be added in the item |
493
|
|
|
# generated by default by bikalisting. |
494
|
|
|
# Call the folderitem method from the base class |
495
|
|
|
item = super(SamplesView, self).folderitem(obj, item, index) |
496
|
|
|
if not item: |
497
|
|
|
return None |
498
|
|
|
|
499
|
|
|
item["Creator"] = self.user_fullname(obj.Creator) |
500
|
|
|
# If we redirect from the folderitems view we should check if the |
501
|
|
|
# user has permissions to medify the element or not. |
502
|
|
|
priority_sort_key = obj.getPrioritySortkey |
503
|
|
|
if not priority_sort_key: |
504
|
|
|
# Default priority is Medium = 3. |
505
|
|
|
# The format of PrioritySortKey is <priority>.<created> |
506
|
|
|
priority_sort_key = "3.%s" % obj.created.ISO8601() |
507
|
|
|
priority = priority_sort_key.split(".")[0] |
508
|
|
|
priority_text = PRIORITIES.getValue(priority) |
509
|
|
|
priority_div = """<div class="priority-ico priority-%s"> |
510
|
|
|
<span class="notext">%s</span><div> |
511
|
|
|
""" |
512
|
|
|
item["replace"]["Priority"] = priority_div % (priority, priority_text) |
513
|
|
|
item["replace"]["getProfilesTitle"] = obj.getProfilesTitleStr |
514
|
|
|
|
515
|
|
|
# returns a list of |
516
|
|
|
# [verified, total, not_submitted, to_be_verified] |
517
|
|
|
analysesnum = obj.getAnalysesNum |
518
|
|
|
if analysesnum: |
519
|
|
|
numbers = { |
520
|
|
|
"verified": analysesnum[0], |
521
|
|
|
"verified_title": t(_("Verified")), |
522
|
|
|
"total": analysesnum[1], |
523
|
|
|
"total_title": t(_("Total")), |
524
|
|
|
"not_submitted": analysesnum[2], |
525
|
|
|
"not_submitted_title": t(_("Open")), |
526
|
|
|
"to_be_verified": analysesnum[3], |
527
|
|
|
"to_be_verified_title": t(_("To be verified")), |
528
|
|
|
} |
529
|
|
|
item["getAnalysesNum"] = ANALYSES_NUM_TPL.safe_substitute(numbers) |
530
|
|
|
html = ANALYSES_NUM_TPL_HTML.safe_substitute(numbers) |
531
|
|
|
item["replace"]["getAnalysesNum"] = html |
532
|
|
|
else: |
533
|
|
|
item["getAnalysesNum"] = "" |
534
|
|
|
|
535
|
|
|
# Progress |
536
|
|
|
progress_perc = obj.getProgress |
537
|
|
|
item["Progress"] = progress_perc |
538
|
|
|
item["replace"]["Progress"] = get_progress_bar_html(progress_perc) |
539
|
|
|
|
540
|
|
|
item["BatchID"] = obj.getBatchID |
541
|
|
|
if obj.getBatchID: |
542
|
|
|
item['replace']['BatchID'] = "<a href='%s'>%s</a>" % \ |
543
|
|
|
(obj.getBatchURL, obj.getBatchID) |
544
|
|
|
# TODO: SubGroup ??? |
545
|
|
|
# val = obj.Schema().getField('SubGroup').get(obj) |
546
|
|
|
# item['SubGroup'] = val.Title() if val else '' |
547
|
|
|
|
548
|
|
|
item["SamplingDate"] = self.str_date(obj.getSamplingDate) |
549
|
|
|
item["getDateSampled"] = self.str_date(obj.getDateSampled) |
550
|
|
|
item["getDateReceived"] = self.str_date(obj.getDateReceived) |
551
|
|
|
item["getDueDate"] = self.str_date(obj.getDueDate) |
552
|
|
|
item["getDatePublished"] = self.str_date(obj.getDatePublished) |
553
|
|
|
item["getDateVerified"] = self.str_date(obj.getDateVerified) |
554
|
|
|
|
555
|
|
|
if self.is_printing_workflow_enabled: |
556
|
|
|
item["Printed"] = "" |
557
|
|
|
printed = obj.getPrinted if hasattr(obj, "getPrinted") else "0" |
558
|
|
|
print_icon = "" |
559
|
|
|
if printed == "0": |
560
|
|
|
print_icon = get_image("delete.png", |
561
|
|
|
title=t(_("Not printed yet"))) |
562
|
|
|
elif printed == "1": |
563
|
|
|
print_icon = get_image("ok.png", |
564
|
|
|
title=t(_("Printed"))) |
565
|
|
|
elif printed == "2": |
566
|
|
|
print_icon = get_image( |
567
|
|
|
"exclamation.png", |
568
|
|
|
title=t(_("Republished after last print"))) |
569
|
|
|
item["after"]["Printed"] = print_icon |
570
|
|
|
item["SamplingDeviation"] = obj.getSamplingDeviationTitle |
571
|
|
|
|
572
|
|
|
item["getStorageLocation"] = obj.getStorageLocationTitle |
573
|
|
|
|
574
|
|
|
after_icons = "" |
575
|
|
|
if obj.assigned_state == 'assigned': |
576
|
|
|
after_icons += get_image("worksheet.png", |
577
|
|
|
title=t(_("All analyses assigned"))) |
578
|
|
|
if item["review_state"] == 'invalid': |
579
|
|
|
after_icons += get_image("delete.png", |
580
|
|
|
title=t(_("Results have been withdrawn"))) |
581
|
|
|
|
582
|
|
|
due_date = obj.getDueDate |
583
|
|
|
if due_date and due_date < (obj.getDatePublished or DateTime()): |
584
|
|
|
due_date_str = self.ulocalized_time(due_date) |
585
|
|
|
img_title = "{}: {}".format(t(_("Late Analyses")), due_date_str) |
586
|
|
|
after_icons += get_image("late.png", title=img_title) |
587
|
|
|
|
588
|
|
|
if obj.getSamplingDate and obj.getSamplingDate > DateTime(): |
589
|
|
|
after_icons += get_image("calendar.png", |
590
|
|
|
title=t(_("Future dated sample"))) |
591
|
|
|
if obj.getInvoiceExclude: |
592
|
|
|
after_icons += get_image("invoice_exclude.png", |
593
|
|
|
title=t(_("Exclude from invoice"))) |
594
|
|
|
if obj.getHazardous: |
595
|
|
|
after_icons += get_image("hazardous.png", |
596
|
|
|
title=t(_("Hazardous"))) |
597
|
|
|
|
598
|
|
|
if obj.getInternalUse: |
599
|
|
|
after_icons += get_image("locked.png", title=t(_("Internal use"))) |
600
|
|
|
|
601
|
|
|
if after_icons: |
602
|
|
|
item['after']['getId'] = after_icons |
603
|
|
|
|
604
|
|
|
item['Created'] = self.ulocalized_time(obj.created, long_format=1) |
605
|
|
|
contact = self.get_object_by_uid(obj.getContactUID) |
606
|
|
|
if contact: |
607
|
|
|
item['ClientContact'] = contact.getFullname() |
608
|
|
|
item['replace']['ClientContact'] = get_link_for(contact) |
609
|
|
|
else: |
610
|
|
|
item["ClientContact"] = "" |
611
|
|
|
# TODO-performance: If SamplingWorkflowEnabled, we have to get the |
612
|
|
|
# full object to check the user permissions, so far this is |
613
|
|
|
# a performance hit. |
614
|
|
|
if obj.getSamplingWorkflowEnabled: |
615
|
|
|
|
616
|
|
|
sampler = obj.getSampler |
617
|
|
|
if sampler: |
618
|
|
|
item["getSampler"] = sampler |
619
|
|
|
item["replace"]["getSampler"] = self.user_fullname(sampler) |
620
|
|
|
|
621
|
|
|
# sampling workflow - inline edits for Sampler and Date Sampled |
622
|
|
|
if item["review_state"] == "to_be_sampled": |
623
|
|
|
# We need to get the full object in order to check |
624
|
|
|
# the permissions |
625
|
|
|
full_object = api.get_object(obj) |
626
|
|
|
if check_permission(TransitionSampleSample, full_object): |
627
|
|
|
# make fields required and editable |
628
|
|
|
item["required"] = ["getSampler", "getDateSampled"] |
629
|
|
|
item["allow_edit"] = ["getSampler", "getDateSampled"] |
630
|
|
|
date = obj.getDateSampled or DateTime() |
631
|
|
|
# provide date and time in a valid input format |
632
|
|
|
item["getDateSampled"] = self.to_datetime_input_value(date) |
633
|
|
|
sampler_roles = ["Sampler", "LabManager", ""] |
634
|
|
|
samplers = getUsers(full_object, sampler_roles) |
635
|
|
|
users = [({ |
636
|
|
|
"ResultValue": u, |
637
|
|
|
"ResultText": samplers.getValue(u)}) for u in samplers] |
638
|
|
|
item["choices"] = {"getSampler": users} |
639
|
|
|
# preselect the current user as sampler |
640
|
|
|
if not sampler and "Sampler" in self.roles: |
641
|
|
|
sampler = self.member.getUserName() |
642
|
|
|
item["getSampler"] = sampler |
643
|
|
|
|
644
|
|
|
# These don't exist on ARs |
645
|
|
|
# XXX This should be a list of preservers... |
646
|
|
|
item["getPreserver"] = "" |
647
|
|
|
item["getDatePreserved"] = "" |
648
|
|
|
|
649
|
|
|
# Assign parent and children partitions of this sample |
650
|
|
|
if self.show_partitions: |
651
|
|
|
item["parent"] = obj.getRawParentAnalysisRequest |
652
|
|
|
item["children"] = obj.getDescendantsUIDs or [] |
653
|
|
|
|
654
|
|
|
return item |
655
|
|
|
|
656
|
|
|
@view.memoize |
657
|
|
|
def get_object_by_uid(self, uid): |
658
|
|
|
"""Returns the object for the given uid |
659
|
|
|
""" |
660
|
|
|
return api.get_object_by_uid(uid, default=None) |
661
|
|
|
|
662
|
|
|
def purge_review_states(self): |
663
|
|
|
"""Purges unnecessary review statuses |
664
|
|
|
""" |
665
|
|
|
remove_filters = [] |
666
|
|
|
setup = api.get_bika_setup() |
667
|
|
|
if not setup.getSamplingWorkflowEnabled(): |
668
|
|
|
remove_filters.append("to_be_sampled") |
669
|
|
|
if not setup.getScheduleSamplingEnabled(): |
670
|
|
|
remove_filters.append("scheduled_sampling") |
671
|
|
|
if not setup.getSamplePreservationEnabled(): |
672
|
|
|
remove_filters.append("to_be_preserved") |
673
|
|
|
if not setup.getRejectionReasons(): |
674
|
|
|
remove_filters.append("rejected") |
675
|
|
|
|
676
|
|
|
self.review_states = filter(lambda r: r.get("id") not in remove_filters, |
677
|
|
|
self.review_states) |
678
|
|
|
|
679
|
|
|
def purge_columns(self): |
680
|
|
|
"""Purges unnecessary columns |
681
|
|
|
""" |
682
|
|
|
remove_columns = [] |
683
|
|
|
if not self.is_printing_workflow_enabled: |
684
|
|
|
remove_columns.append("Printed") |
685
|
|
|
|
686
|
|
|
for rv in self.review_states: |
687
|
|
|
cols = rv.get("columns", []) |
688
|
|
|
rv["columns"] = filter(lambda c: c not in remove_columns, cols) |
689
|
|
|
|
690
|
|
|
def add_custom_transitions(self): |
691
|
|
|
"""Adds custom transitions as required |
692
|
|
|
""" |
693
|
|
|
custom_transitions = [] |
694
|
|
|
if self.is_printing_workflow_enabled: |
695
|
|
|
custom_transitions.append({ |
696
|
|
|
"id": "print_sample", |
697
|
|
|
"title": _("Print"), |
698
|
|
|
"url": "{}/workflow_action?action={}".format( |
699
|
|
|
self.url, "print_sample") |
700
|
|
|
}) |
701
|
|
|
|
702
|
|
|
copy_to_new = self.get_copy_to_new_transition() |
703
|
|
|
if copy_to_new: |
704
|
|
|
custom_transitions.append(copy_to_new) |
705
|
|
|
|
706
|
|
|
# Allow to create a worksheet for the selected samples |
707
|
|
|
if self.can_create_worksheet(): |
708
|
|
|
custom_transitions.append({ |
709
|
|
|
"id": "modal_create_worksheet", |
710
|
|
|
"title": _("Create Worksheet"), |
711
|
|
|
"url": "{}/create_worksheet_modal".format( |
712
|
|
|
api.get_url(self.context)), |
713
|
|
|
"css_class": "btn btn-outline-secondary", |
714
|
|
|
"help": _("Create a new worksheet for the selected samples") |
715
|
|
|
}) |
716
|
|
|
|
717
|
|
|
for rv in self.review_states: |
718
|
|
|
rv.setdefault("custom_transitions", []).extend(custom_transitions) |
719
|
|
|
|
720
|
|
|
def get_copy_to_new_transition(self): |
721
|
|
|
"""Returns the copy to new custom transition if the current has enough |
722
|
|
|
privileges. Returns None otherwise |
723
|
|
|
""" |
724
|
|
|
base_url = None |
725
|
|
|
mtool = api.get_tool("portal_membership") |
726
|
|
|
if mtool.checkPermission(AddAnalysisRequest, self.context): |
727
|
|
|
base_url = self.url |
728
|
|
|
else: |
729
|
|
|
client = api.get_current_client() |
730
|
|
|
if client and mtool.checkPermission(AddAnalysisRequest, client): |
731
|
|
|
base_url = api.get_url(client) |
732
|
|
|
|
733
|
|
|
if base_url: |
734
|
|
|
return { |
735
|
|
|
"id": "copy_to_new", |
736
|
|
|
"title": _("Copy to new"), |
737
|
|
|
"url": "{}/workflow_action?action=copy_to_new".format(base_url) |
738
|
|
|
} |
739
|
|
|
|
740
|
|
|
return None |
741
|
|
|
|
742
|
|
|
def can_create_worksheet(self): |
743
|
|
|
"""Checks if the create worksheet transition should be rendered or not |
744
|
|
|
""" |
745
|
|
|
# check add permission for Worksheets |
746
|
|
|
if not can_add_worksheet(self.portal): |
747
|
|
|
return False |
748
|
|
|
|
749
|
|
|
# only available for samples in received state and with at least one |
750
|
|
|
# analysis in unassigned status |
751
|
|
|
for sample in self.get_selected_samples(): |
752
|
|
|
state = api.get_workflow_status_of(sample) |
753
|
|
|
if state not in ["sample_received"]: |
754
|
|
|
return False |
755
|
|
|
|
756
|
|
|
# At least one analysis in unassigned status |
757
|
|
|
if not self.has_unassigned_analyses(sample): |
758
|
|
|
return False |
759
|
|
|
|
760
|
|
|
# restrict contexts to well known places |
761
|
|
|
if ISamples.providedBy(self.context): |
762
|
|
|
return True |
763
|
|
|
elif IBatch.providedBy(self.context): |
764
|
|
|
return True |
765
|
|
|
elif IClient.providedBy(self.context): |
766
|
|
|
return True |
767
|
|
|
else: |
768
|
|
|
return False |
769
|
|
|
|
770
|
|
|
def has_unassigned_analyses(self, sample): |
771
|
|
|
"""Returns whether the sample passed in has at least one analysis in |
772
|
|
|
'unassigned' status |
773
|
|
|
""" |
774
|
|
|
for analysis in sample.getAnalyses(): |
775
|
|
|
status = api.get_review_status(analysis) |
776
|
|
|
if status == "unassigned": |
777
|
|
|
return True |
778
|
|
|
return False |
779
|
|
|
|
780
|
|
|
def get_selected_samples(self): |
781
|
|
|
"""Returns the selected samples |
782
|
|
|
""" |
783
|
|
|
payload = self.get_json() |
784
|
|
|
uids = payload.get("selected_uids", []) |
785
|
|
|
return map(api.get_object, uids) |
786
|
|
|
|
787
|
|
|
@property |
788
|
|
|
def is_printing_workflow_enabled(self): |
789
|
|
|
setup = api.get_setup() |
790
|
|
|
return setup.getPrintingWorkflowEnabled() |
791
|
|
|
|
792
|
|
|
def str_date(self, date, long_format=1, default=""): |
793
|
|
|
if not date: |
794
|
|
|
return default |
795
|
|
|
return self.ulocalized_time(date, long_format=long_format) |
796
|
|
|
|
797
|
|
|
def to_datetime_input_value(self, date): |
798
|
|
|
"""Converts to a compatible datetime format |
799
|
|
|
""" |
800
|
|
|
if not isinstance(date, DateTime): |
801
|
|
|
return "" |
802
|
|
|
return dtime.date_to_string(date, fmt="%Y-%m-%d %H:%M") |
803
|
|
|
|
804
|
|
|
def getDefaultAddCount(self): |
805
|
|
|
return self.context.bika_setup.getDefaultNumberOfARsToAdd() |
806
|
|
|
|
807
|
|
|
@property |
808
|
|
|
def show_partitions(self): |
809
|
|
|
if self.flat_listing: |
810
|
|
|
return False |
811
|
|
|
if api.get_current_client(): |
812
|
|
|
# If current user is a client contact, delegate to ShowPartitions |
813
|
|
|
return api.get_setup().getShowPartitions() |
814
|
|
|
return True |
815
|
|
|
|
816
|
|
|
@property |
817
|
|
|
def flat_listing(self): |
818
|
|
|
return self.review_state.get("flat_listing", False) |
819
|
|
|
|