build_table_series() - Code Metrics - salimkanoun/GaelO - Measure and Improve Code Quality continuously with Scrutinizer

build_table_series() F
last analyzed 2021-07-04 22:07 UTC

↳ Parent: Project

Complexity

Conditions	23
Paths	> 20000

Size

Total Lines	215
Code Lines	197

Duplication

Lines	0
Ratio	0 %

Importance

Changes	2
Bugs	0	Features	0

Metric	Value
cc	23
eloc	197
c	2
b	0
f	0
nc	55297
nop	2
dl	0
loc	215
rs	0

How to fix Long Method Complexity

<?php
/**
 Copyright (C) 2018-2020 KANOUN Salim
 This program is free software; you can redistribute it and/or modify
 it under the terms of the Affero GNU General Public v.3 License as published by
 the Free Software Foundation;
 This program is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 Affero GNU General Public Public for more details.
 You should have received a copy of the Affero GNU General Public Public along
 with this program; if not, write to the Free Software Foundation, Inc.,
 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
 */

// If Not done do not display anything
if ($visitObject->statusDone == Visit::NOT_DONE) {
	echo ("<h1>Visit Not Done</h1>");
	return;
} ?>

<script type="text/javascript">
    
	$(document).ready(function(){
    		$("#formInvestigator").load('/specific_form', {
    			id_visit : <?=$id_visit?>,
    			type_visit : '<?=$type_visit?>',
    			patient_num : <?=$patient_num?>
            });
            
        	//If upload validated display the detailed tables
            <?php
			if ($visitObject->uploadStatus == Visit::NOT_DONE && $role === User::INVESTIGATOR) {
			?>

				$.ajax({
					type: "GET",
					url: '/scripts/get_possible_import.php',
					dataType: 'json',
					success: function(data) {

						let targetVisit = data.filter((visit)=>{
							return visit.visitID === <?= $id_visit ?>
						})

						window.Gaelo_Uploader.installUploader({
							minNbOfInstances: 30,
							availableVisits : targetVisit,
							tusEndpoint : '/tus',
							isNewStudy : async (originalOrthancID) => {
								return new Promise( (resolve, reject) => {
										$.ajax({
										type: "POST",
										url: '/scripts/is_new_study.php',
										//Do not trigger event to avoid conflit with dicomupload listener in parallel
										global: false,
										data: {
											originalOrthancID : originalOrthancID
										},
										success: function(data) {
											resolve( (data === 'true') )
										},
										error : function(){
											resolve(false)
										}
									});
								})	
							},
							onStartUsing: ()=>{
								preventAjaxDivLoading()
							},
							onStudyUploaded : function validateUpload(visitID, sucessIDsUploaded, numberOfFiles, originalStudyOrthancID) {
								$.ajax({
									type: "POST",
									url: '/scripts/validate_dicom_upload_tus.php',
									//Do not trigger event to avoid conflit with dicomupload listener in parallel
									global: false,
									data: {
										id_visit : visitID,
										totalDicomFiles : numberOfFiles,
										sucessIDsUploaded : sucessIDsUploaded,
										originalOrthancStudyID : originalStudyOrthancID
									},
									success: function() {
										let uploadedVisit = targetVisit.filter((visit)=>{
											return visit.visitID == visitID
										})[0]
										
										alertifySuccess('Upload Validation Success Patient : '+uploadedVisit['patientCode']+' Visit : '+uploadedVisit['visitType'])
									
								},
								error : function(){
										alertifyError('Upload Validation Visit '+visitID+' Error, please contact administrator')
								}
								});		

							},
							onUploadComplete: ()=>{
								alertifySuccess('Upload Finished')
								allowAjaxDivLoading()
								refreshDivContenu()
							}
						}, 'dicomUploaderv2')
						checkBrowserSupportDicomUpload('#dicomUploaderv2');
					
					},
					error : function(){
						console.log('error');
					}
				});	

				$("#dicomUploaderv2").on("remove", function () {
					let results = window.Gaelo_Uploader.closeUploader('dicomUploaderv2')
					console.log('Uploader Removed '+results)
				})	
               
           <?php
			}
			?>
          
			//If current user is controller diplay the quality controle form, the included QC form is disabled according to QC status
	       <?php
			if ($role == User::CONTROLLER && ($visitObject->stateQualityControl == Visit::QC_NOT_DONE || $visitObject->stateQualityControl == Visit::QC_WAIT_DEFINITVE_CONCLUSION)) {
				?>  
                $("#controlerForm").load('/controller_form', {
                    id_visit : <?= $id_visit ?>,
                    type_visit : '<?= $type_visit ?>',
                    patient_num : <?= $patient_num ?>
                });
    
    	       <?php
				// If investigator has reponded to the quality control, display the corrective action form
				if ($visitObject->stateQualityControl == Visit::QC_WAIT_DEFINITVE_CONCLUSION) {
				?>
            		$("#correctiveAction").load('/corrective_action', {
            			id_visit : <?= $id_visit ?>,
            			type_visit : '<?= $type_visit ?>',
            			patient_num : <?= $patient_num ?>
            		});
    	       <?php
				}
			}
    
			// If corrective action is asked, display the corrective action form for investigator (or monitor)
			if ($visitObject->stateQualityControl == Visit::QC_CORRECTIVE_ACTION_ASKED && ($role == User::INVESTIGATOR || $role == User::MONITOR)) {
				?>
            		$("#correctiveAction").load('/corrective_action', {
            			id_visit : <?=$id_visit?>,
            			type_visit : '<?=$type_visit?>',
            			patient_num : <?=$patient_num?>
            		});
            	
            		$("#controlerForm").load('/controller_form', {
            			id_visit : <?=$id_visit?>,
            			type_visit : '<?=$type_visit?>',
            			patient_num : <?=$patient_num?>
            		});
        
            	<?php
			}
			if ($role == User::REVIEWER || ($role == User::INVESTIGATOR && $visitObject->uploadStatus == Visit::DONE) || ($role == User::CONTROLLER && ($visitObject->stateQualityControl == Visit::QC_NOT_DONE || $visitObject->stateQualityControl == Visit::QC_WAIT_DEFINITVE_CONCLUSION))) {
				?>
            		$("#reviewerDownloadDicomBtn").on('click', function() {
            			$("#downloadForm").submit();
            		});
            		
            		$("#OHIFViewer").on('click', function() {
            			var win = window.open('/ohif/viewer/<?=$visitObject->getStudyDicomDetails()->studyUID ?>', '_blank');
                        if (win) {
                            //Browser has allowed it to be opened
                            win.focus();
                        } else {
                            //Browser has blocked it
                            alert('Please allow popups for this website');
                        }
            		});
        	    <?php
			}
			?>

	});
	
	function refreshDivContenu(){
		$('#contenu').load('/visit_interface', {
				id_visit : <?=$id_visit?>,
				type_visit : '<?=$type_visit?>',
				patient_num : <?=$patient_num?>
		});
		$('#containerTree').jstree(true).refresh();
	};

	<?php if ($visitObject->uploadStatus == Visit::UPLOAD_PROCESSING) {
		
		?>
	    function refreshUploadStatus(){
	        $.ajax({
	            type: "POST",
	            url: '/scripts/get_upload_status.php',
				dataType: 'json',
				//Do not trigger event to avoid conflit with dicomupload listener in parallel
				global: false,
	            data: {id_visit:<?=$id_visit?>},
				success: function(data) {
		           //Update the span of the upload status
					var spinner=$('#spinnerUploadDiv<?=$visitObject->id_visit?>');
					var uploadStatusLabel=$('#uploadStatusLabel<?=$visitObject->id_visit?>');
					var checkIcon=$('#checkIconDiv<?=$visitObject->id_visit?>');
					
					uploadStatusLabel.html(data);
					
		        	if(data == "<?=Visit::UPLOAD_PROCESSING?>"){
		        		spinner.show();
		        		setTimeout(refreshUploadStatus, 5000);
		        	}else if(data=="<?= Visit::DONE ?>"){
		        		checkIcon.show();
		        		uploadStatusLabel.css("color", "green");
		        		spinner.hide();
		        		<?php if ($visitObject->stateInvestigatorForm == Visit::DONE) {
							?>
		        			refreshDivContenu();
		        			<?php
						}?>
		        	}else{
		        		spinner.hide();
		        		uploadStatusLabel.css("color", "red");
		        		checkIcon.hide();
		        	}
	           },
	           error : function(){
		           console.log('error');
	           }
			});		

		}

	    $( document ).ready(function() {
	    	refreshUploadStatus();
	    });
	

	<?php 
	    
	}?>

    	
    </script>

<?php
// Status reminder
if ($role != User::REVIEWER) {
	?>
    <div class="bloc_bordures text-center mt-3 mb-3">
		<label><b>Upload Status:</b> <span id="uploadStatusLabel<?=$visitObject->id_visit?>"><?=$visitObject->uploadStatus?> </span> </label>
    	<span id="spinnerUploadDiv<?=$visitObject->id_visit?>" class="spinner-border text-primary" role="status" style="display: none;">
			<span class="sr-only">Loading...</span>
		</span>
		<span id="checkIconDiv<?=$visitObject->id_visit?>" style="display: none;">
			<svg xmlns="http://www.w3.org/2000/svg" width="12" height="16" viewBox="0 0 12 16">
				<path fill-rule="evenodd" d="M12 5l-8 8-4-4 1.5-1.5L4 10l6.5-6.5L12 5z"/>
			</svg>
		</span>
		<br>
		<label><b>Quality Control Status:</b> <?=$visitObject->stateQualityControl?></label>
    </div>
    <?php
}
// If reviewer or controler with awaiting QC action add an invisible form and a button to make dicom zip dowload
if ($role == User::REVIEWER || ($role == User::INVESTIGATOR && $visitObject->uploadStatus == Visit::DONE) || ($role == User::CONTROLLER && ($visitObject->stateQualityControl == Visit::QC_WAIT_DEFINITVE_CONCLUSION || $visitObject->stateQualityControl == Visit::QC_NOT_DONE))) {
	?>
    <div class="text-center mt-3 mb-3">
    	<input class="btn btn-primary" type="button"
    		id="reviewerDownloadDicomBtn" value="Download DICOM">
		<input class="btn btn-primary" type="button"
    		id="OHIFViewer" value="OHIF Viewer">
    </div>
    <form id="downloadForm" method="post"
    	action="scripts/download_dicom.php">
    	<input type="hidden" name="id_visit" value="<?=$id_visit?>">
    
    </form>

<?php
}
// If upload validated display the detailed tables
if ($visitObject->uploadStatus == Visit::DONE && $role != User::REVIEWER) {
	build_patient_visit_table($patientObject, $role);
	build_visit_details_table(array($visitObject), $_SESSION['role']);
	build_table_series($role, $visitObject);
}
?>

<div id="dicomUploaderv2" class="mt-3"></div>
<div id="correctiveAction"></div>
<div id="controlerForm"></div>
<div id="formInvestigator"></div>

<?php
function replaceEmpty($data) {
	if (empty($data)) {
		return ('/');
	}else {
		return (htmlspecialchars($data));
	}
}
/**
 * Generate Table of series details of a given visit for visit investigator interface
 */
function build_table_series($role, $visitObject)
{
	// Get Series Object Array with details
	$data_series=$visitObject->getSeriesDetails();
    
	$series_number=count($data_series);
    
	if ($series_number == 0) return;
    
	$colspan=$series_number+1;
	?>
	<div class="accordion mt-3" id="accordionExample">
		<div >
			<div id="headingOne">
				<h2 class="mb-0">
					<button class="btn btn-primary" type="button" data-toggle="collapse" data-target="#seriesDetails" aria-expanded="true" aria-controls="collapseOne">
						Show/Hide Series Details
					</button>
				</h2>
			</div>

			<div id="seriesDetails" class="show mt-3" aria-labelledby="headingOne" data-parent="#accordionExample">
			<div>
				<div style="overflow-x:auto;"> 
					<table id="tab_series" class="table table-striped">
						<tr>
							<th colspan=<?=$colspan ?>>Series information</th>
						</tr>
						<tr>
							<td>Series Number</td>
							<?php 
							for ($i=0; $i < $series_number; $i++) {
								if (empty($data_series[$i]->seriesNumber))
									?>
									<td> 
										<?=replaceEmpty($data_series[$i]->seriesNumber)?>
									</td>
							<?php 
							}?>
						</tr>
						<tr>
							<td>Manufacturer</td>
							<?php 
							for ($i=0; $i < $series_number; $i++) {
								?>
								<td>
									<?=replaceEmpty($data_series[$i]->manufacturer)?>
								</td>
						<?php 
							}?>
						</tr>
						<tr>
							<td>Series Description</td>
							<?php 
							for ($i=0; $i < $series_number; $i++) {
								?>
								<td>
									<?=replaceEmpty($data_series[$i]->seriesDescription)?>
								</td>
						<?php 
							}
							?>
						</tr>
						<tr>
							<td>Modality</td>
							<?php 
							for ($i=0; $i < $series_number; $i++) {
								?>
								<td>
									<?=replaceEmpty($data_series[$i]->modality)?>
								</td>
						<?php 
							}
							?>
						</tr>
						<tr>
							<td>Acquisition Date Time</td>
							<?php 
							for ($i=0; $i < $series_number; $i++) {
								?>
								<td>
									<?=replaceEmpty($data_series[$i]->acquisitionDateTime)?>
								</td>
						<?php 
							}
							?>
						</tr>
						<tr>
							<td>Total Dose (MBq)</td>
							<?php 
							for ($i=0; $i < $series_number; $i++) {
								?>
								<td>
								<?php if (empty($data_series[$i]->injectedDose)) {
									echo('/');
								}else {
									echo(htmlspecialchars($data_series[$i]->injectedDose/10 ** 6));
								}
								?>
								</td>
							<?php
							}
							?>
						</tr>
						<tr>
							<td>Radiopharmaceutical</td>
							<?php 
							for ($i=0; $i < $series_number; $i++) {
								?>
								<td>
									<?=replaceEmpty($data_series[$i]->radiopharmaceutical)?>
								</td>
						<?php 
							}
							?>
						</tr>
						<tr>
							<td>Injection Date Time</td>
							<?php 
							for ($i=0; $i < $series_number; $i++) {
								?>
								<td>
									<?=replaceEmpty($data_series[$i]->injectedDateTime)?>
								</td>
						<?php 
							}
							?>
						</tr>
						<tr>
							<td>Radiopharm. Specific Activity (MBq)</td>
							<?php 
							for ($i=0; $i < $series_number; $i++) {
								?>
								<td>
								<?php if (empty($data_series[$i]->injectedActivity)) {
									echo('/');
								}else {
									echo(htmlspecialchars($data_series[$i]->injectedActivity/10 ** 6));
								}
								?>
								</td>
							<?php
							}
							?>
						</tr>
						<tr>
							<td>Half Life (s)</td>
							<?php 
							for ($i=0; $i < $series_number; $i++) {
								?>
								<td>
									<?=replaceEmpty($data_series[$i]->halfLife)?>
								</td>
							<?php 
							}
							?>
						</tr>
						<tr>
							<td>Patient's Weight (kg)</td>
							<?php 
							for ($i=0; $i < $series_number; $i++) {
								?>
								<td>
									<?=replaceEmpty($data_series[$i]->patientWeight)?>
								</td>
							<?php 
							}
							?>
						</tr>
						<tr>
							<td>Slice Count</td>
							<?php 
							for ($i=0; $i < $series_number; $i++) {
								?>
								<td>
									<?=replaceEmpty($data_series[$i]->numberInstances)?>
								</td>
							<?php 
							}
							?>
						</tr>
						<tr>
							<td>Upload Date</td>
							<?php 
							for ($i=0; $i < $series_number; $i++) {
								?>
								<td>
									<?=replaceEmpty($data_series[$i]->studyDetailsObject->uploadDate)?>
								</td>
							<?php 
							}
							?>
						</tr>
						<?php 
						if (($role == User::INVESTIGATOR || $role == User::CONTROLLER) && ($visitObject->stateQualityControl != Visit::QC_ACCEPTED && $visitObject->stateQualityControl != Visit::QC_REFUSED)) {
						?><tr>
							<td>Delete</td>
						<?php 
						for ($i=0; $i < $series_number; $i++) {
							?>
							<td>
								<a href=scripts/change_series_deletion.php?action=delete&Series_Orthanc_Id=<?=htmlspecialchars($data_series[$i]->seriesOrthancID)?> class="ajaxLinkConfirm" ><input class="btn btn-danger" type="button" value="Delete Series"></a>
							</td>
						<?php 
						}
						?>
						</tr>
						<tr>
							<td colspan="<?=$colspan?>">
								<a href=scripts/change_series_deletion.php?action=delete&Series_Orthanc_Id=allVisit<?=$visitObject->id_visit?> class="ajaxLinkConfirm" ><input class="btn btn-danger" type="button" value="Delete All (Reset Upload)"></a>
							</td>
						</tr>
					<?php 
					}?>
					</table> 
				</div>
			</div>
			</div>
		</div>
	</div>
	
	
	
<?php 
}
?>

1			<?php
2			/**
3			Copyright (C) 2018-2020 KANOUN Salim
4			This program is free software; you can redistribute it and/or modify
5			it under the terms of the Affero GNU General Public v.3 License as published by
6			the Free Software Foundation;
7			This program is distributed in the hope that it will be useful,
8			but WITHOUT ANY WARRANTY; without even the implied warranty of
9			MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
10			Affero GNU General Public Public for more details.
11			You should have received a copy of the Affero GNU General Public Public along
12			with this program; if not, write to the Free Software Foundation, Inc.,
13			51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
14			*/
15
16			// If Not done do not display anything
17			if ($visitObject->statusDone == Visit::NOT_DONE) {
18			echo ("<h1>Visit Not Done</h1>");
19			return;
20			} ?>
21
22			<script type="text/javascript">
23
24			$(document).ready(function(){
25			$("#formInvestigator").load('/specific_form', {
26			id_visit : <?=$id_visit?>,
27			type_visit : '<?=$type_visit?>',
28			patient_num : <?=$patient_num?>
29			});
30
31			//If upload validated display the detailed tables
32			<?php
33			if ($visitObject->uploadStatus == Visit::NOT_DONE && $role === User::INVESTIGATOR) {
34			?>
35
36			$.ajax({
37			type: "GET",
38			url: '/scripts/get_possible_import.php',
39			dataType: 'json',
40			success: function(data) {
41
42			let targetVisit = data.filter((visit)=>{
43			return visit.visitID === <?= $id_visit ?>
44			})
45
46			window.Gaelo_Uploader.installUploader({
47			minNbOfInstances: 30,
48			availableVisits : targetVisit,
49			tusEndpoint : '/tus',
50			isNewStudy : async (originalOrthancID) => {
51			return new Promise( (resolve, reject) => {
52			$.ajax({
53			type: "POST",
54			url: '/scripts/is_new_study.php',
55			//Do not trigger event to avoid conflit with dicomupload listener in parallel
56			global: false,
57			data: {
58			originalOrthancID : originalOrthancID
59			},
60			success: function(data) {
61			resolve( (data === 'true') )
62			},
63			error : function(){
64			resolve(false)
65			}
66			});
67			})
68			},
69			onStartUsing: ()=>{
70			preventAjaxDivLoading()
71			},
72			onStudyUploaded : function validateUpload(visitID, sucessIDsUploaded, numberOfFiles, originalStudyOrthancID) {
73			$.ajax({
74			type: "POST",
75			url: '/scripts/validate_dicom_upload_tus.php',
76			//Do not trigger event to avoid conflit with dicomupload listener in parallel
77			global: false,
78			data: {
79			id_visit : visitID,
80			totalDicomFiles : numberOfFiles,
81			sucessIDsUploaded : sucessIDsUploaded,
82			originalOrthancStudyID : originalStudyOrthancID
83			},
84			success: function() {
85			let uploadedVisit = targetVisit.filter((visit)=>{
86			return visit.visitID == visitID
87			})[0]
88
89			alertifySuccess('Upload Validation Success Patient : '+uploadedVisit['patientCode']+' Visit : '+uploadedVisit['visitType'])
90
91			},
92			error : function(){
93			alertifyError('Upload Validation Visit '+visitID+' Error, please contact administrator')
94			}
95			});
96
97			},
98			onUploadComplete: ()=>{
99			alertifySuccess('Upload Finished')
100			allowAjaxDivLoading()
101			refreshDivContenu()
102			}
103			}, 'dicomUploaderv2')
104			checkBrowserSupportDicomUpload('#dicomUploaderv2');
105
106			},
107			error : function(){
108			console.log('error');
109			}
110			});
111
112			$("#dicomUploaderv2").on("remove", function () {
113			let results = window.Gaelo_Uploader.closeUploader('dicomUploaderv2')
114			console.log('Uploader Removed '+results)
115			})
116
117			<?php
118			}
119			?>
120
121			//If current user is controller diplay the quality controle form, the included QC form is disabled according to QC status
122			<?php
123			if ($role == User::CONTROLLER && ($visitObject->stateQualityControl == Visit::QC_NOT_DONE \|\| $visitObject->stateQualityControl == Visit::QC_WAIT_DEFINITVE_CONCLUSION)) {
124			?>
125			$("#controlerForm").load('/controller_form', {
126			id_visit : <?= $id_visit ?>,
127			type_visit : '<?= $type_visit ?>',
128			patient_num : <?= $patient_num ?>
129			});
130
131			<?php
132			// If investigator has reponded to the quality control, display the corrective action form
133			if ($visitObject->stateQualityControl == Visit::QC_WAIT_DEFINITVE_CONCLUSION) {
134			?>
135			$("#correctiveAction").load('/corrective_action', {
136			id_visit : <?= $id_visit ?>,
137			type_visit : '<?= $type_visit ?>',
138			patient_num : <?= $patient_num ?>
139			});
140			<?php
141			}
142			}
143
144			// If corrective action is asked, display the corrective action form for investigator (or monitor)
145			if ($visitObject->stateQualityControl == Visit::QC_CORRECTIVE_ACTION_ASKED && ($role == User::INVESTIGATOR \|\| $role == User::MONITOR)) {
146			?>
147			$("#correctiveAction").load('/corrective_action', {
148			id_visit : <?=$id_visit?>,
149			type_visit : '<?=$type_visit?>',
150			patient_num : <?=$patient_num?>
151			});
152
153			$("#controlerForm").load('/controller_form', {
154			id_visit : <?=$id_visit?>,
155			type_visit : '<?=$type_visit?>',
156			patient_num : <?=$patient_num?>
157			});
158
159			<?php
160			}
161			if ($role == User::REVIEWER \|\| ($role == User::INVESTIGATOR && $visitObject->uploadStatus == Visit::DONE) \|\| ($role == User::CONTROLLER && ($visitObject->stateQualityControl == Visit::QC_NOT_DONE \|\| $visitObject->stateQualityControl == Visit::QC_WAIT_DEFINITVE_CONCLUSION))) {
162			?>
163			$("#reviewerDownloadDicomBtn").on('click', function() {
164			$("#downloadForm").submit();
165			});
166
167			$("#OHIFViewer").on('click', function() {
168			var win = window.open('/ohif/viewer/<?=$visitObject->getStudyDicomDetails()->studyUID ?>', '_blank');
169			if (win) {
170			//Browser has allowed it to be opened
171			win.focus();
172			} else {
173			//Browser has blocked it
174			alert('Please allow popups for this website');
175			}
176			});
177			<?php
178			}
179			?>
180
181			});
182
183			function refreshDivContenu(){
184			$('#contenu').load('/visit_interface', {
185			id_visit : <?=$id_visit?>,
186			type_visit : '<?=$type_visit?>',
187			patient_num : <?=$patient_num?>
188			});
189			$('#containerTree').jstree(true).refresh();
190			};
191
192			<?php if ($visitObject->uploadStatus == Visit::UPLOAD_PROCESSING) {
193
194			?>
195			function refreshUploadStatus(){
196			$.ajax({
197			type: "POST",
198			url: '/scripts/get_upload_status.php',
199			dataType: 'json',
200			//Do not trigger event to avoid conflit with dicomupload listener in parallel
201			global: false,
202			data: {id_visit:<?=$id_visit?>},
203			success: function(data) {
204			//Update the span of the upload status
205			var spinner=$('#spinnerUploadDiv<?=$visitObject->id_visit?>');
206			var uploadStatusLabel=$('#uploadStatusLabel<?=$visitObject->id_visit?>');
207			var checkIcon=$('#checkIconDiv<?=$visitObject->id_visit?>');
208
209			uploadStatusLabel.html(data);
210
211			if(data == "<?=Visit::UPLOAD_PROCESSING?>"){
212			spinner.show();
213			setTimeout(refreshUploadStatus, 5000);
214			}else if(data=="<?= Visit::DONE ?>"){
215			checkIcon.show();
216			uploadStatusLabel.css("color", "green");
217			spinner.hide();
218			<?php if ($visitObject->stateInvestigatorForm == Visit::DONE) {
219			?>
220			refreshDivContenu();
221			<?php
222			}?>
223			}else{
224			spinner.hide();
225			uploadStatusLabel.css("color", "red");
226			checkIcon.hide();
227			}
228			},
229			error : function(){
230			console.log('error');
231			}
232			});
233
234			}
235
236			$( document ).ready(function() {
237			refreshUploadStatus();
238			});
239
240
241			<?php
242
243			}?>
244
245
246			</script>
247
248			<?php
249			// Status reminder
250			if ($role != User::REVIEWER) {
251			?>
252			<div class="bloc_bordures text-center mt-3 mb-3">
253			<label><b>Upload Status:</b> <span id="uploadStatusLabel<?=$visitObject->id_visit?>"><?=$visitObject->uploadStatus?> </span> </label>
254			<span id="spinnerUploadDiv<?=$visitObject->id_visit?>" class="spinner-border text-primary" role="status" style="display: none;">
255			<span class="sr-only">Loading...</span>
256			</span>
257			<span id="checkIconDiv<?=$visitObject->id_visit?>" style="display: none;">
258			<svg xmlns="http://www.w3.org/2000/svg" width="12" height="16" viewBox="0 0 12 16">
259			<path fill-rule="evenodd" d="M12 5l-8 8-4-4 1.5-1.5L4 10l6.5-6.5L12 5z"/>
260			</svg>
261			</span>
262			<br>
263			<label><b>Quality Control Status:</b> <?=$visitObject->stateQualityControl?></label>
264			</div>
265			<?php
266			}
267			// If reviewer or controler with awaiting QC action add an invisible form and a button to make dicom zip dowload
268			if ($role == User::REVIEWER \|\| ($role == User::INVESTIGATOR && $visitObject->uploadStatus == Visit::DONE) \|\| ($role == User::CONTROLLER && ($visitObject->stateQualityControl == Visit::QC_WAIT_DEFINITVE_CONCLUSION \|\| $visitObject->stateQualityControl == Visit::QC_NOT_DONE))) {
269			?>
270			<div class="text-center mt-3 mb-3">
271			<input class="btn btn-primary" type="button"
272			id="reviewerDownloadDicomBtn" value="Download DICOM">
273			<input class="btn btn-primary" type="button"
274			id="OHIFViewer" value="OHIF Viewer">
275			</div>
276			<form id="downloadForm" method="post"
277			action="scripts/download_dicom.php">
278			<input type="hidden" name="id_visit" value="<?=$id_visit?>">
279
280			</form>
281
282			<?php
283			}
284			// If upload validated display the detailed tables
285			if ($visitObject->uploadStatus == Visit::DONE && $role != User::REVIEWER) {
286			build_patient_visit_table($patientObject, $role);
287			build_visit_details_table(array($visitObject), $_SESSION['role']);
288			build_table_series($role, $visitObject);
289			}
290			?>
291
292			<div id="dicomUploaderv2" class="mt-3"></div>
293			<div id="correctiveAction"></div>
294			<div id="controlerForm"></div>
295			<div id="formInvestigator"></div>
296
297			<?php
298			function replaceEmpty($data) {
299			if (empty($data)) {
300			return ('/');
301			}else {
302			return (htmlspecialchars($data));
303			}
304			}
305			/**
306			* Generate Table of series details of a given visit for visit investigator interface
307			*/
308			function build_table_series($role, $visitObject)
309			{
310			// Get Series Object Array with details
311			$data_series=$visitObject->getSeriesDetails();
312
313			$series_number=count($data_series);
314
315			if ($series_number == 0) return;
316
317			$colspan=$series_number+1;
318			?>
319			<div class="accordion mt-3" id="accordionExample">
320			<div >
321			<div id="headingOne">
322			<h2 class="mb-0">
323			<button class="btn btn-primary" type="button" data-toggle="collapse" data-target="#seriesDetails" aria-expanded="true" aria-controls="collapseOne">
324			Show/Hide Series Details
325			</button>
326			</h2>
327			</div>
328
329			<div id="seriesDetails" class="show mt-3" aria-labelledby="headingOne" data-parent="#accordionExample">
330			<div>
331			<div style="overflow-x:auto;">
332			<table id="tab_series" class="table table-striped">
333			<tr>
334			<th colspan=<?=$colspan ?>>Series information</th>
335			</tr>
336			<tr>
337			<td>Series Number</td>
338			<?php
339			for ($i=0; $i < $series_number; $i++) {
340			if (empty($data_series[$i]->seriesNumber))
341			?>
342			<td>
343			<?=replaceEmpty($data_series[$i]->seriesNumber)?>
344			</td>
345			<?php
346			}?>
347			</tr>
348			<tr>
349			<td>Manufacturer</td>
350			<?php
351			for ($i=0; $i < $series_number; $i++) {
352			?>
353			<td>
354			<?=replaceEmpty($data_series[$i]->manufacturer)?>
355			</td>
356			<?php
357			}?>
358			</tr>
359			<tr>
360			<td>Series Description</td>
361			<?php
362			for ($i=0; $i < $series_number; $i++) {
363			?>
364			<td>
365			<?=replaceEmpty($data_series[$i]->seriesDescription)?>
366			</td>
367			<?php
368			}
369			?>
370			</tr>
371			<tr>
372			<td>Modality</td>
373			<?php
374			for ($i=0; $i < $series_number; $i++) {
375			?>
376			<td>
377			<?=replaceEmpty($data_series[$i]->modality)?>
378			</td>
379			<?php
380			}
381			?>
382			</tr>
383			<tr>
384			<td>Acquisition Date Time</td>
385			<?php
386			for ($i=0; $i < $series_number; $i++) {
387			?>
388			<td>
389			<?=replaceEmpty($data_series[$i]->acquisitionDateTime)?>
390			</td>
391			<?php
392			}
393			?>
394			</tr>
395			<tr>
396			<td>Total Dose (MBq)</td>
397			<?php
398			for ($i=0; $i < $series_number; $i++) {
399			?>
400			<td>
401			<?php if (empty($data_series[$i]->injectedDose)) {
402			echo('/');
403			}else {
404			echo(htmlspecialchars($data_series[$i]->injectedDose/10 ** 6));
405			}
406			?>
407			</td>
408			<?php
409			}
410			?>
411			</tr>
412			<tr>
413			<td>Radiopharmaceutical</td>
414			<?php
415			for ($i=0; $i < $series_number; $i++) {
416			?>
417			<td>
418			<?=replaceEmpty($data_series[$i]->radiopharmaceutical)?>
419			</td>
420			<?php
421			}
422			?>
423			</tr>
424			<tr>
425			<td>Injection Date Time</td>
426			<?php
427			for ($i=0; $i < $series_number; $i++) {
428			?>
429			<td>
430			<?=replaceEmpty($data_series[$i]->injectedDateTime)?>
431			</td>
432			<?php
433			}
434			?>
435			</tr>
436			<tr>
437			<td>Radiopharm. Specific Activity (MBq)</td>
438			<?php
439			for ($i=0; $i < $series_number; $i++) {
440			?>
441			<td>
442			<?php if (empty($data_series[$i]->injectedActivity)) {
443			echo('/');
444			}else {
445			echo(htmlspecialchars($data_series[$i]->injectedActivity/10 ** 6));
446			}
447			?>
448			</td>
449			<?php
450			}
451			?>
452			</tr>
453			<tr>
454			<td>Half Life (s)</td>
455			<?php
456			for ($i=0; $i < $series_number; $i++) {
457			?>
458			<td>
459			<?=replaceEmpty($data_series[$i]->halfLife)?>
460			</td>
461			<?php
462			}
463			?>
464			</tr>
465			<tr>
466			<td>Patient's Weight (kg)</td>
467			<?php
468			for ($i=0; $i < $series_number; $i++) {
469			?>
470			<td>
471			<?=replaceEmpty($data_series[$i]->patientWeight)?>
472			</td>
473			<?php
474			}
475			?>
476			</tr>
477			<tr>
478			<td>Slice Count</td>
479			<?php
480			for ($i=0; $i < $series_number; $i++) {
481			?>
482			<td>
483			<?=replaceEmpty($data_series[$i]->numberInstances)?>
484			</td>
485			<?php
486			}
487			?>
488			</tr>
489			<tr>
490			<td>Upload Date</td>
491			<?php
492			for ($i=0; $i < $series_number; $i++) {
493			?>
494			<td>
495			<?=replaceEmpty($data_series[$i]->studyDetailsObject->uploadDate)?>
496			</td>
497			<?php
498			}
499			?>
500			</tr>
501			<?php
502			if (($role == User::INVESTIGATOR \|\| $role == User::CONTROLLER) && ($visitObject->stateQualityControl != Visit::QC_ACCEPTED && $visitObject->stateQualityControl != Visit::QC_REFUSED)) {
503			?><tr>
504			<td>Delete</td>
505			<?php
506			for ($i=0; $i < $series_number; $i++) {
507			?>
508			<td>
509			<a href=scripts/change_series_deletion.php?action=delete&Series_Orthanc_Id=<?=htmlspecialchars($data_series[$i]->seriesOrthancID)?> class="ajaxLinkConfirm" ><input class="btn btn-danger" type="button" value="Delete Series"></a>
510			</td>
511			<?php
512			}
513			?>
514			</tr>
515			<tr>
516			<td colspan="<?=$colspan?>">
517			<a href=scripts/change_series_deletion.php?action=delete&Series_Orthanc_Id=allVisit<?=$visitObject->id_visit?> class="ajaxLinkConfirm" ><input class="btn btn-danger" type="button" value="Delete All (Reset Upload)"></a>
518			</td>
519			</tr>
520			<?php
521			}?>
522			</table>
523			</div>
524			</div>
525			</div>
526			</div>
527			</div>
528
529
530
531			<?php
532			}
533			?>

salimkanoun / GaelO

build_table_series() F last analyzed 2021-07-04 22:07 UTC

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build_table_series() F
last analyzed 2021-07-04 22:07 UTC