Code Duplication - mmagnus/rna-tools - Measure and Improve Code Quality continuously with Scrutinizer

Code Duplication Length = 10-12 lines in 3 locations

rna_tools/tools/automatix/xxdownload_job_and_process.py 1 location



import argparse

def get_parser():
    parser = argparse.ArgumentParser(
        description=__doc__, formatter_class=argparse.RawDescriptionHelpFormatter)

    #parser.add_argument('-', "--", help="", default="")

    parser.add_argument("-v", "--verbose",
                        action="store_true", help="be verbose")
    parser.add_argument('--dir', action="store_false")
    parser.add_argument("rna", help="", default="evox.py -c ade")
    parser.add_argument("simrnawebid", help="", default="")
    return parser


if __name__ == '__main__':

rna_tools/tools/rna_alignment/utils/rna_alignment_process_id.py 1 location



import argparse

def get_parser():
    parser = argparse.ArgumentParser(
        description=__doc__, formatter_class=argparse.RawDescriptionHelpFormatter)

    parser.add_argument("-v", "--verbose",
                        action="store_true", help="be verbose")
    parser.add_argument("-d", "--debug",
                        action="store_true", help="be verbose")
    parser.add_argument('--id-width', type=int, default=70)
    parser.add_argument('--sep', default='|')
    parser.add_argument("alignment")
    return parser


if __name__ == '__main__':

rna_tools/tools/plotting/rna_plot_hist.py 1 location


pd.options.display.max_rows = 100


def get_parser():
    """Get parser."""
    parser = argparse.ArgumentParser(description=__doc__,
                                     formatter_class=argparse.RawDescriptionHelpFormatter)
    parser.add_argument('file', help="rmsd.txt")
    parser.add_argument('--column', help="column of file to plot")
    parser.add_argument('--sep', help="separator, be default \t", default=",")
    parser.add_argument('-o', '--output')
    parser.add_argument('--bins', default=10)
    return parser


if __name__ == '__main__':

		@@ 11-22 (lines=12) @@
8
9		import argparse
10
11		def get_parser():
12		parser = argparse.ArgumentParser(
13		description=__doc__, formatter_class=argparse.RawDescriptionHelpFormatter)
14
15		#parser.add_argument('-', "--", help="", default="")
16
17		parser.add_argument("-v", "--verbose",
18		action="store_true", help="be verbose")
19		parser.add_argument('--dir', action="store_false")
20		parser.add_argument("rna", help="", default="evox.py -c ade")
21		parser.add_argument("simrnawebid", help="", default="")
22		return parser
23
24
25		if __name__ == '__main__':

		@@ 34-43 (lines=10) @@
31		pd.options.display.max_rows = 100
32
33
34		def get_parser():
35		"""Get parser."""
36		parser = argparse.ArgumentParser(description=__doc__,
37		formatter_class=argparse.RawDescriptionHelpFormatter)
38		parser.add_argument('file', help="rmsd.txt")
39		parser.add_argument('--column', help="column of file to plot")
40		parser.add_argument('--sep', help="separator, be default \t", default=",")
41		parser.add_argument('-o', '--output')
42		parser.add_argument('--bins', default=10)
43		return parser
44
45
46		if __name__ == '__main__':

		@@ 10-21 (lines=12) @@
7
8		import argparse
9
10		def get_parser():
11		parser = argparse.ArgumentParser(
12		description=__doc__, formatter_class=argparse.RawDescriptionHelpFormatter)
13
14		parser.add_argument("-v", "--verbose",
15		action="store_true", help="be verbose")
16		parser.add_argument("-d", "--debug",
17		action="store_true", help="be verbose")
18		parser.add_argument('--id-width', type=int, default=70)
19		parser.add_argument('--sep', default='\|')
20		parser.add_argument("alignment")
21		return parser
22
23
24		if __name__ == '__main__':

mmagnus / rna-tools

Code Duplication Length = 10-12 lines in 3 locations

rna_tools/tools/automatix/xxdownload_job_and_process.py 1 location

rna_tools/tools/rna_alignment/utils/rna_alignment_process_id.py 1 location

rna_tools/tools/plotting/rna_plot_hist.py 1 location