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@@ 548-582 (lines=35) @@
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cmd.delete('backbone') |
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def rcm(): |
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""" |
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tube coloring for large RNA comparisons |
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""" |
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#cmd.bg_color( "white" ) |
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cmd.hide( 'everything' ) |
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cmd.set('cartoon_ladder_mode', 0 ) |
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cmd.color( 'red','resn rG+G+DG') |
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cmd.color( 'forest','resn rC+C+DC') |
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cmd.color( 'orange','resn rA+A+DA') |
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cmd.color( 'blue','resn rU+U+DT+BRU') |
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AllObj=cmd.get_names("all") |
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cmd.select( 'backbone', " (name o1p+o2p+o3p+p+op1+op2+'c1*'+'c2*'+'c3*'+'c5*'+'o2*'+'o3*'+'o4*'+'o5*'+'c1*'+'c2*'+'c3*'+'c4*'+'o2*'+'o4*'+c1'+c2'+c3'+c5'+o2'+o3'+o4'+o5'+c1'+c2'+c3'+c4'+o2'+o4') and (not name c1+c2+c3+c4+c5+o2+o3+o4+o5) ") |
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for x in AllObj: |
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print(x) |
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cmd.show( "cartoon", x ) |
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cmd.spectrum( "count", "rainbow", x+" and backbone" ) |
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cmd.cartoon( "tube", "backbone" ) |
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cmd.set( "cartoon_ring_mode", 0 ) |
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cmd.set( "cartoon_ring_transparency", 0.0 ) |
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cmd.set( "cartoon_tube_radius", 1.0 ) |
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cmd.color( 'red','resn rG+G and name n1+c6+o6+c5+c4+n7+c8+n9+n3+c2+n1+n2') |
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cmd.color( 'forest','resn rC+C and name n1+c2+o2+n3+c4+n4+c5+c6') |
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cmd.color( 'orange','resn rA+A and name n1+c6+n6+c5+n7+c8+n9+c4+n3+c2') |
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cmd.color( 'blue','resn rU+U and name n3+c4+o4+c5+c6+n1+c2+o2') |
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cmd.delete('backbone') |
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def rcd(): |
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@@ 514-546 (lines=33) @@
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util.cbag() |
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cmd.color( "white", "elem C" ) |
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def rc(): |
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""" |
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tube coloring for large RNA comparisons |
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""" |
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cmd.bg_color( "white" ) |
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cmd.hide( 'everything' ) |
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cmd.color( 'red','resn rG+G+DG') |
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cmd.color( 'forest','resn rC+C+DC') |
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cmd.color( 'orange','resn rA+A+DA') |
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cmd.color( 'blue','resn rU+U+DT+BRU') |
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AllObj=cmd.get_names("all") |
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cmd.select( 'backbone', " (name o1p+o2p+o3p+p+op1+op2+'c1*'+'c2*'+'c3*'+'c5*'+'o2*'+'o3*'+'o4*'+'o5*'+'c1*'+'c2*'+'c3*'+'c4*'+'o2*'+'o4*'+c1'+c2'+c3'+c5'+o2'+o3'+o4'+o5'+c1'+c2'+c3'+c4'+o2'+o4') and (not name c1+c2+c3+c4+c5+o2+o3+o4+o5) ") |
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for x in AllObj: |
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print(x) |
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cmd.show( "cartoon", x ) |
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cmd.spectrum( "count", "rainbow", x+" and backbone" ) |
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cmd.cartoon( "tube", "backbone" ) |
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cmd.set( "cartoon_ring_mode", 0 ) |
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cmd.set( "cartoon_ring_transparency", 0.0 ) |
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cmd.set( "cartoon_tube_radius", 1.0 ) |
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cmd.color( 'red','resn rG+G and name n1+c6+o6+c5+c4+n7+c8+n9+n3+c2+n1+n2') |
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cmd.color( 'forest','resn rC+C and name n1+c2+o2+n3+c4+n4+c5+c6') |
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cmd.color( 'orange','resn rA+A and name n1+c6+n6+c5+n7+c8+n9+c4+n3+c2') |
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cmd.color( 'blue','resn rU+U and name n3+c4+o4+c5+c6+n1+c2+o2') |
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cmd.delete('backbone') |
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| 548 |
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def rcm(): |
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""" |
mmagnus /
rna-tools
