rna_tools/tools/triplexibility/triplexibility.py 1 location
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@@ 312-321 (lines=10) @@
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| 309 |
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return rms |
| 310 |
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| 311 |
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| 312 |
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def get_rna_models_from_dir(directory): |
| 313 |
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models = [] |
| 314 |
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if not os.path.exists(directory): |
| 315 |
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raise Exception('Dir does not exist! ', directory) |
| 316 |
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files = glob.glob(directory + "/*.pdb") |
| 317 |
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files_sorted = sort_nicely(files) |
| 318 |
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for f in files_sorted: |
| 319 |
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#print f |
| 320 |
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models.append(RNAmodel(f)) |
| 321 |
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return models |
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def sort_nicely( l ): |
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""" Sort the given list in the way that humans expect. |
rna_tools/tools/triplexibility/triplexibility2.py 1 location
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@@ 253-262 (lines=10) @@
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| 250 |
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return rms |
| 251 |
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| 252 |
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| 253 |
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def get_rna_models_from_dir(directory): |
| 254 |
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models = [] |
| 255 |
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if not os.path.exists(directory): |
| 256 |
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raise Exception('Dir does not exist! ', directory) |
| 257 |
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files = glob.glob(directory + "/*.pdb") |
| 258 |
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files_sorted = sort_nicely(files) |
| 259 |
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for f in files_sorted: |
| 260 |
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#print f |
| 261 |
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models.append(RNAmodel(f)) |
| 262 |
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return models |
| 263 |
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| 264 |
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def sort_nicely( l ): |
| 265 |
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""" Sort the given list in the way that humans expect. |
rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_biopython.py 1 location
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@@ 218-227 (lines=10) @@
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| 215 |
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return rms |
| 216 |
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| 217 |
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| 218 |
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def get_rna_models_from_dir(directory): |
| 219 |
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models = [] |
| 220 |
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if not os.path.exists(directory): |
| 221 |
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raise Exception('Dir does not exist! ', directory) |
| 222 |
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files = glob.glob(directory + "/*.pdb") |
| 223 |
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files_sorted = sort_nicely(files) |
| 224 |
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for f in files_sorted: |
| 225 |
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#print f |
| 226 |
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models.append(RNAmodel(f)) |
| 227 |
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return models |
| 228 |
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| 229 |
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def sort_nicely( l ): |
| 230 |
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""" Sort the given list in the way that humans expect. |
mmagnus /
rna-tools
