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Code Duplication    Length = 11-11 lines in 2 locations

rna_tools/tools/triplexibility/triplexibility.py 1 location

@@ 296-306 (lines=11) @@
293 
                io.set_structure(other_rnamodel.struc)
294 

                                

                                                            

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            args.save_here = True

                                

                                                            

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            if args.save_here and save:

                                

                                                            

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                f = os.path.basename(self.fpath.replace('.pdb', '_aligned'))

                                

                                                            

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                # print(f)

                                

                                                            

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                try:

                                

                                                            

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                    os.mkdir(f)

                                

                                                            

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                except:

                                

                                                            

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                    pass

                                

                                                            

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                # fout = f + os.sep + os.path.basename(other_rnamodel.fpath.replace('.pdb', '_aligned_s' + suffix + '.pdb'))

                                

                                                            

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                fout = f + os.sep + os.path.basename(other_rnamodel.fpath)#.replace('.pdb', '_aligned'))

                                

                                                            

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            else:

                                

                                                            

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                fout = other_rnamodel.fpath.replace('.pdb', '_aligned.pdb')

                                

                                                            

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            if save:

                                

                                                            

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               io.save(fout)

                                

                                                            

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        return rms

                                

                                                                        

                

                                                            

                    
rna_tools/tools/triplexibility/triplexibility2.py 1 location

                

                

                    

                                                
                                                    

                                
                                
                                    @@ 237-247 (lines=11) @@
                                
                            


                                                            

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                io.set_structure(other_rnamodel.struc)

                                

                                                            

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            args.save_here = True

                                

                                                            

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            if args.save_here and save:

                                

                                                            

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                f = os.path.basename(self.fpath.replace('.pdb', '_aligned'))

                                

                                                            

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                # print(f)

                                

                                                            

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                try:

                                

                                                            

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                    os.mkdir(f)

                                

                                                            

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                except:

                                

                                                            

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                    pass

                                

                                                            

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                # fout = f + os.sep + os.path.basename(other_rnamodel.fpath.replace('.pdb', '_aligned_s' + suffix + '.pdb'))

                                

                                                            

                                    245
                                    
                                    
                fout = f + os.sep + os.path.basename(other_rnamodel.fpath)#.replace('.pdb', '_aligned'))

                                

                                                            

                                    246
                                    
                                    
            else:

                                

                                                            

                                    247
                                    
                                    
                fout = other_rnamodel.fpath.replace('.pdb', '_aligned.pdb')

                                

                                                            

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            if save:

                                

                                                            

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               io.save(fout)

                                

                                                            

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        return rms