build.rna_tools.tools.mq.lib.shellgraphics.shellgraphics.poption() - Code Metrics - mmagnus/rna-tools - Measure and Improve Code Quality continuously with Scrutinizer

poption() C
last analyzed 2025-03-19 22:26 UTC

↳ Parent: build.rna_tools.tools.mq.lib.shellgraphics.shellgraphics

Complexity

Conditions

Size

Total Lines	11
Code Lines	8

Duplication

Lines	0
Ratio	0 %

Importance

Changes

Metric	Value
cc	10
eloc	8
nop	2
dl	0
loc	11
rs	5.9999
c	0
b	0
f	0

How to fix Complexity

#!/usr/bin/python
"""ShellGraphics - a library of some simple graphics tricks in terminal

Run `ShellGraphics.py` or open `demo.txt` (the file was created with `python ShellGraphics.py > demo.txt`)

 ____  _          _ _  ____                 _     _          
/ ___|| |__   ___| | |/ ___|_ __ __ _ _ __ | |__ (_) ___ ___ 
\___ \| '_ \ / _ \ | | |  _| '__/ _` | '_ \| '_ \| |/ __/ __|
 ___) | | | |  __/ | | |_| | | | (_| | |_) | | | | | (__\__ \
|____/|_| |_|\___|_|_|\____|_|  \__,_| .__/|_| |_|_|\___|___/
                                     |_|                     

 mqaprna.py

####################################################################################################
# mqaprna.py                                                                                       #
####################################################################################################
****************************************************************************************************
* mqaprna.py                                                                                       *
****************************************************************************************************

 mqaprna.py

 Ignore pdb fn        off
 Seq ss fn            off
 Native pdb           off
 Output csv           test_m0.csv
 Directory            test_data/2/
 Multiprocessing      off
 AnalyzeGeometry      off
 SSAgreement          off
 to ignore []
 files to analyze: 3
----------------------------------------------------------------------------------------------------
 methods: ['RASP', 'SimRNA', 'ClashScore', 'FARNA', 'NAST_pyro']
----------------------------------------------------------------------------------------------------

etc.
"""
import sys
import time
import subprocess

terminal_length = 80
color_mode = True

class Title(object):
    def __init__(self):
        print("#" * terminal_length)
        title = "mqaprna.py v0.1"
        print("#", title, " " * (terminal_length  - 5 - len(title)), '#')
        print("#" * terminal_length)

class Table(object):
    column_length = 30
    def __init__(self, headers):
        self.headers = headers

    def show_header(self):
        print(self.headers[0].ljust(self.column_length), end=' ')
        for h in self.headers[1:]:
            print(h.rjust(self.column_length), end=' ')
        print()
        print('-' * terminal_length)

    def show_row(self, values):
        print(values[0].ljust(self.column_length), end=' ')
        for h in values[1:]:
            print(h.rjust(self.column_length), end=' ')
        print()

    def save_csv(self):
        pass


def table_demo():
    t = Table(['fn','SimRNA', 'FARNA', 'X'])
    t.show_header()
    t.show_row(['1xjrA_output3-000142_AA.pdb', '-35.861', '44.043', '111'])
    t.show_row(['1xjrA_output3-000142_AA.pdb', '-34.861', '322.12', '443'])
    phr()


def phr(char='-'):
    """Print ------- where '-' is set by char"""
    print(char * terminal_length)


def phr_text(text, verbose=True):
    """Print hr if CHAR is '*' you will get:
    ************************************************************** <text> *"""
    len_of_hr = terminal_length
    CHAR =  '-'
    if verbose: 
        text=str(text)
        st=CHAR * (len_of_hr - 3 - len(text)) + ' ' + text + ' ' + CHAR # 3 = ' 'test' '* = 2x' ' + 1x*
        print(st)
        return True
    else:
        return False


def pbanner_simply(text):
    """
    """
    pbr()
    if color_mode:
        print('\033[1;34m' + text + '\033[1;m')
    else:
        print(text)
    pbr()


def pbanner(text, char="#", verbose=True):
    """Print

    - text, like: SUPER PROGRAM ver.01
    - len, by default it equals to LENGTH_OF_THE_SCREEN
    - verbose
    ---------

    DO:
    - print banner, like:
    ##################################################
    # SUPER PROGRAM ver.01                           #
    ##################################################

    or use '*'
    ---------
    RETURN:
    - True if ok
    """
    len = terminal_length
    if verbose:
        print(char * len + '\n' + char +' '+ text.ljust(len-3)+ char  +'\n'+ char * len)
    return True


def pprogress_line(step, amount,text,length_the_bar=terminal_length, verbose=True):
    """Generate a progress bar::

      [===================================================X----] # 36412 ; 94.0878552972 % ; 36500

    :params:

     - step, c(ounter) in loop,
     - amount, to count a percent,
     - length_the_bar of whole progress bar (use to scale)

    how to use it::

        c=0
        len_of_iter=len(list)
        for i in list:
            c+=1
            toolboX.progress_line(c,len_of_iter,verbose=True)
    
    :return: string
    """
    percent=float(step)/amount * 100
    #
    #  length_the_bar 
    #
    #length_the_bar=length_the_bar#-15
    #
    done=int((float(percent)*length_the_bar)/100) # 1.4 % -> 1
    #
    #  2% calosci - 100%
    #  x (ile kresek) - 50 (gdy dlugosc bara wynosi jeno 50); czyli wyjdzie o polowe mnieij
    #  dla procent 2% tylko jeden step done '[=X ...'
    #
    #for done in range(1,100): to test
    #print '#',step,';',percent, '%'            
    if verbose: print('['+'-'*done+''+' '*(length_the_bar-done)+']',' ',str(step).rjust(4), str(round(percent,2)).ljust(4), '%',amount, text)
    # return True


def pformat_line(name, value='',char="#", verbose=True, wide=terminal_length):
    """
    GET:
    - name,
    - value,
    - verbose,
    - wide, length of field with name, len from the beginning of name to ':'


    DO:
    print # STEP              : 20

    pformat_line('magnus','ok')
    # Magnus                                                            o
    """

    value=str(value)

    if verbose: 
        if value:
            #print "# "+name.capitalize().ljust(wide)+' : ',value # #EXISTS               : Yes
            if type(value)==type([1]):
                print(char + ' ' + name.capitalize() +' ', value)
            else:
                print(char + ' ' + name.capitalize()+' '* (LENGTH_OF_THE_SCREEN - len(value) - len(name)-2) +value) #EXISTS               : Yes

        else:
            print(char + ' ' + name.capitalize().ljust(wide))               #EXISTS              


def pin_red(text, newline = True):
    """
    http://www.siafoo.net/snippet/88
    """
    if color_mode:
        if newline:
            print('\033[1;31m' + text + '\033[1;m')
        else:
            print('\033[1;31m' + text + '\033[1;m', end=' ')        
    else:
        print(text)
    
def pin_green(text, newline = True):
    """
    http://www.siafoo.net/snippet/88
    """
    if color_mode:
        if newline:
            print('\033[1;32m' + text + '\033[1;m')
        else:
            print('\033[1;32m' + text + '\033[1;m', end=' ')
    else:
        print(text)

def pin_blue(text, newline = True):
    """
    http://www.siafoo.net/snippet/88
    """
    if color_mode:
        if newline:
            print('\033[1;34m' + text + '\033[1;m')
        else:
            print('\033[1;34m' + text + '\033[1;m', end=' ')
    else:
        print(text)


def pin_red_and_blue(text, text2, newline = True):
    """

    inspired: http://www.siafoo.net/snippet/88
    """
    if color_mode:
        if newline:
            print('\033[1;31m' + text + '\033[1;m' + '\033[1;34m' + text2 + '\033[1;m')
        else:
            print('\033[1;31m' + text + '\033[1;m' + '\033[1;34m' + text2 + '\033[1;m')
    else:
        print(text + ' ' + text)


def ph_center(text, char='-'):
    if len(text) % 2:
        half = (terminal_length - len(text) - 1) / 2
        print(char * (half - 1), text, char * half)
    else:
        half = (terminal_length - len(text) - 2) / 2
        print(char * half, text, char * half)


def ph_center2(text):
    """
    ================================================================
                            Output                              
    ----------------------------------------------------------------
    """
    phr('=')
    ph_center(text, char=' ')
    phr('-')


def ptitle(text):
        """Show a huge title using `figlet`.

        .. warning :: `figlet` has to be installed in system
        """
        subprocess.check_call(['figlet', text])


def poption(name, value):
    """Print option: name and value. If value is True or 'on' or any string/number then print 'on' in green otherwise print 'off' in red.
    """
    if (value == 'off' or value == False or not value) and color_mode:
        print('', name.ljust(20), '\033[1;31moff\033[1;m')  # red
    elif (value == 'on' or value == True) and color_mode:
        print('', name.ljust(20), '\033[1;32mon\033[1;m')  # green
    elif value and color_mode:
        print('', name.ljust(20), '\033[1;32m' + value + '\033[1;m')  # green
    else:
        print('', name.ljust(20), value)


def poptions(dictionary):
    """Get dict and print as options
    """
    print('--------------------------  ----------------------------------------------------')
    for d in list(dictionary.keys()):
        print(d.ljust(27), end=' ') 
        value = dictionary[d]        
        if (value == 'off' or value == False or not value) and color_mode:
            print('\033[1;31moff\033[1;m')  # red
        elif (value == 'on' or value == True) and color_mode:
            print('\033[1;32mon\033[1;m')  # green
        elif value and color_mode:
            print('\033[1;32m' + value + '\033[1;m')  # green
        else:
            if value == None:
                print('off')
            elif value == False:
                print('off')
            elif value == True:
                print('on')
            else:
                print(value)


def pbr():
        print()


def psub(text):
    """Print ' <text>'
    """
    print('', str(text))

def p(text):
    """Just print '<text>'
    """
    print(str(text))


def start(): pass

if __name__ == '__main__':
        ptitle('ShellGraphics')
        pbanner_simply('mqaprna.py')
        pbanner('mqaprna.py')
        pbanner('mqaprna.py', '*')
        phr_text('SimRNA')

        for i in range(1,6):
                pprogress_line(i,5, 'text')
                sys.stdout.write("\033[F") # Cursor up one line - works in oneline!
                time.sleep(1)

        Title()
        table_demo()
        pformat_line('foo foo')
        pin_red('foo')
        pin_blue('foo')
        pin_red_and_blue('foo','foo2')
        ph_center('Options')
        p('help')
        psub('logout - to log out')
        ph_center('Options:')
        ph_center2('Option')
        pbr()
        poption('native pdb', 'on') 
        poption('native pdb', 'off') 
        pbr()
        poption('native pdb', True) 
        poption('native pdb', False) 
        pbr()
        poption('native pdb', 'any text')
        poption('native pdb', bool('any text'))
        poption('native pdb', '') 


1			#!/usr/bin/python
2			"""ShellGraphics - a library of some simple graphics tricks in terminal
3
4			Run `ShellGraphics.py` or open `demo.txt` (the file was created with `python ShellGraphics.py > demo.txt`)
5
6			____ _ _ _ ____ _ _
7			/ ___\|\| \|__ ___\| \| \|/ ___\|_ __ __ _ _ __ \| \|__ (_) ___ ___
8			\___ \\| '_ \ / _ \ \| \| \| _\| '__/ _` \| '_ \\| '_ \\| \|/ __/ __\|
9			___) \| \| \| \| __/ \| \| \|_\| \| \| \| (_\| \| \|_) \| \| \| \| \| (__\__ \
10			\|____/\|_\| \|_\|\___\|_\|_\|\____\|_\| \__,_\| .__/\|_\| \|_\|_\|\___\|___/
11			\|_\|
12
13			mqaprna.py
14
15			####################################################################################################
16			# mqaprna.py #
17			####################################################################################################
18			****************************************************************************************************
19			* mqaprna.py *
20			****************************************************************************************************
21
22			mqaprna.py
23
24			Ignore pdb fn off
25			Seq ss fn off
26			Native pdb off
27			Output csv test_m0.csv
28			Directory test_data/2/
29			Multiprocessing off
30			AnalyzeGeometry off
31			SSAgreement off
32			to ignore []
33			files to analyze: 3
34			----------------------------------------------------------------------------------------------------
35			methods: ['RASP', 'SimRNA', 'ClashScore', 'FARNA', 'NAST_pyro']
36			----------------------------------------------------------------------------------------------------
37
38			etc.
39			"""
40			import sys
41			import time
42			import subprocess
43
44			terminal_length = 80
45			color_mode = True
46
47			class Title(object):
48			def __init__(self):
49			print("#" * terminal_length)
50			title = "mqaprna.py v0.1"
51			print("#", title, " " * (terminal_length - 5 - len(title)), '#')
52			print("#" * terminal_length)
53
54			class Table(object):
55			column_length = 30
56			def __init__(self, headers):
57			self.headers = headers
58
59			def show_header(self):
60			print(self.headers[0].ljust(self.column_length), end=' ')
61			for h in self.headers[1:]:
62			print(h.rjust(self.column_length), end=' ')
63			print()
64			print('-' * terminal_length)
65
66			def show_row(self, values):
67			print(values[0].ljust(self.column_length), end=' ')
68			for h in values[1:]:
69			print(h.rjust(self.column_length), end=' ')
70			print()
71
72			def save_csv(self):
73			pass
74
75
76			def table_demo():
77			t = Table(['fn','SimRNA', 'FARNA', 'X'])
78			t.show_header()
79			t.show_row(['1xjrA_output3-000142_AA.pdb', '-35.861', '44.043', '111'])
80			t.show_row(['1xjrA_output3-000142_AA.pdb', '-34.861', '322.12', '443'])
81			phr()
82
83
84			def phr(char='-'):
85			"""Print ------- where '-' is set by char"""
86			print(char * terminal_length)
87
88
89			def phr_text(text, verbose=True):
90			"""Print hr if CHAR is '*' you will get:
91			************************************************************** <text> *"""
92			len_of_hr = terminal_length
93			CHAR = '-'
94			if verbose:
95			text=str(text)
96			st=CHAR * (len_of_hr - 3 - len(text)) + ' ' + text + ' ' + CHAR # 3 = ' 'test' '* = 2x' ' + 1x*
97			print(st)
98			return True
99			else:
100			return False
101
102
103			def pbanner_simply(text):
104			"""
105			"""
106			pbr()
107			if color_mode:
108			print('\033[1;34m' + text + '\033[1;m')
109			else:
110			print(text)
111			pbr()
112
113
114			def pbanner(text, char="#", verbose=True):
115			"""Print
116
117			- text, like: SUPER PROGRAM ver.01
118			- len, by default it equals to LENGTH_OF_THE_SCREEN
119			- verbose
120			---------
121
122			DO:
123			- print banner, like:
124			##################################################
125			# SUPER PROGRAM ver.01 #
126			##################################################
127
128			or use '*'
129			---------
130			RETURN:
131			- True if ok
132			"""
133			len = terminal_length
134			if verbose:
135			print(char * len + '\n' + char +' '+ text.ljust(len-3)+ char +'\n'+ char * len)
136			return True
137
138
139			def pprogress_line(step, amount,text,length_the_bar=terminal_length, verbose=True):
140			"""Generate a progress bar::
141
142			[===================================================X----] # 36412 ; 94.0878552972 % ; 36500
143
144			:params:
145
146			- step, c(ounter) in loop,
147			- amount, to count a percent,
148			- length_the_bar of whole progress bar (use to scale)
149
150			how to use it::
151
152			c=0
153			len_of_iter=len(list)
154			for i in list:
155			c+=1
156			toolboX.progress_line(c,len_of_iter,verbose=True)
157
158			:return: string
159			"""
160			percent=float(step)/amount * 100
161			#
162			# length_the_bar
163			#
164			#length_the_bar=length_the_bar#-15
165			#
166			done=int((float(percent)*length_the_bar)/100) # 1.4 % -> 1
167			#
168			# 2% calosci - 100%
169			# x (ile kresek) - 50 (gdy dlugosc bara wynosi jeno 50); czyli wyjdzie o polowe mnieij
170			# dla procent 2% tylko jeden step done '[=X ...'
171			#
172			#for done in range(1,100): to test
173			#print '#',step,';',percent, '%'
174			if verbose: print('['+'-'done+''+' '(length_the_bar-done)+']',' ',str(step).rjust(4), str(round(percent,2)).ljust(4), '%',amount, text)
175			# return True
176
177
178			def pformat_line(name, value='',char="#", verbose=True, wide=terminal_length):
179			"""
180			GET:
181			- name,
182			- value,
183			- verbose,
184			- wide, length of field with name, len from the beginning of name to ':'
185
186
187			DO:
188			print # STEP : 20
189
190			pformat_line('magnus','ok')
191			# Magnus o
192			"""
193
194			value=str(value)
195
196			if verbose:
197			if value:
198			#print "# "+name.capitalize().ljust(wide)+' : ',value # #EXISTS : Yes
199			if type(value)==type([1]):
200			print(char + ' ' + name.capitalize() +' ', value)
201			else:
202			print(char + ' ' + name.capitalize()+' '* (LENGTH_OF_THE_SCREEN - len(value) - len(name)-2) +value) #EXISTS : Yes
			0 ignored issues – show Comprehensibility Best Practice introduced 2022-03-26 14:52 UTC by Report Bug Copy Issue Report The variable `LENGTH_OF_THE_SCREEN` does not seem to be defined. Loading history...
203			else:
204			print(char + ' ' + name.capitalize().ljust(wide)) #EXISTS
205
206
207			def pin_red(text, newline = True):
208			"""
209			http://www.siafoo.net/snippet/88
210			"""
211			if color_mode:
212			if newline:
213			print('\033[1;31m' + text + '\033[1;m')
214			else:
215			print('\033[1;31m' + text + '\033[1;m', end=' ')
216			else:
217			print(text)
218
219			def pin_green(text, newline = True):
220			"""
221			http://www.siafoo.net/snippet/88
222			"""
223			if color_mode:
224			if newline:
225			print('\033[1;32m' + text + '\033[1;m')
226			else:
227			print('\033[1;32m' + text + '\033[1;m', end=' ')
228			else:
229			print(text)
230
231			def pin_blue(text, newline = True):
232			"""
233			http://www.siafoo.net/snippet/88
234			"""
235			if color_mode:
236			if newline:
237			print('\033[1;34m' + text + '\033[1;m')
238			else:
239			print('\033[1;34m' + text + '\033[1;m', end=' ')
240			else:
241			print(text)
242
243
244			def pin_red_and_blue(text, text2, newline = True):
245			"""
246
247			inspired: http://www.siafoo.net/snippet/88
248			"""
249			if color_mode:
250			if newline:
251			print('\033[1;31m' + text + '\033[1;m' + '\033[1;34m' + text2 + '\033[1;m')
252			else:
253			print('\033[1;31m' + text + '\033[1;m' + '\033[1;34m' + text2 + '\033[1;m')
254			else:
255			print(text + ' ' + text)
256
257
258			def ph_center(text, char='-'):
259			if len(text) % 2:
260			half = (terminal_length - len(text) - 1) / 2
261			print(char * (half - 1), text, char * half)
262			else:
263			half = (terminal_length - len(text) - 2) / 2
264			print(char * half, text, char * half)
265
266
267			def ph_center2(text):
268			"""
269			================================================================
270			Output
271			----------------------------------------------------------------
272			"""
273			phr('=')
274			ph_center(text, char=' ')
275			phr('-')
276
277
278			def ptitle(text):
279			"""Show a huge title using `figlet`.
280
281			.. warning :: `figlet` has to be installed in system
282			"""
283			subprocess.check_call(['figlet', text])
284
285
286			def poption(name, value):
287			"""Print option: name and value. If value is True or 'on' or any string/number then print 'on' in green otherwise print 'off' in red.
288			"""
289			if (value == 'off' or value == False or not value) and color_mode:
290			print('', name.ljust(20), '\033[1;31moff\033[1;m') # red
291			elif (value == 'on' or value == True) and color_mode:
292			print('', name.ljust(20), '\033[1;32mon\033[1;m') # green
293			elif value and color_mode:
294			print('', name.ljust(20), '\033[1;32m' + value + '\033[1;m') # green
295			else:
296			print('', name.ljust(20), value)
297
298
299			def poptions(dictionary):
300			"""Get dict and print as options
301			"""
302			print('-------------------------- ----------------------------------------------------')
303			for d in list(dictionary.keys()):
304			print(d.ljust(27), end=' ')
305			value = dictionary[d]
306			if (value == 'off' or value == False or not value) and color_mode:
307			print('\033[1;31moff\033[1;m') # red
308			elif (value == 'on' or value == True) and color_mode:
309			print('\033[1;32mon\033[1;m') # green
310			elif value and color_mode:
311			print('\033[1;32m' + value + '\033[1;m') # green
312			else:
313			if value == None:
314			print('off')
315			elif value == False:
316			print('off')
317			elif value == True:
318			print('on')
319			else:
320			print(value)
321
322
323			def pbr():
324			print()
325
326
327			def psub(text):
328			"""Print ' <text>'
329			"""
330			print('', str(text))
331
332			def p(text):
333			"""Just print '<text>'
334			"""
335			print(str(text))
336
337
338			def start(): pass
339
340			if __name__ == '__main__':
341			ptitle('ShellGraphics')
342			pbanner_simply('mqaprna.py')
343			pbanner('mqaprna.py')
344			pbanner('mqaprna.py', '*')
345			phr_text('SimRNA')
346
347			for i in range(1,6):
348			pprogress_line(i,5, 'text')
349			sys.stdout.write("\033[F") # Cursor up one line - works in oneline!
350			time.sleep(1)
351
352			Title()
353			table_demo()
354			pformat_line('foo foo')
355			pin_red('foo')
356			pin_blue('foo')
357			pin_red_and_blue('foo','foo2')
358			ph_center('Options')
359			p('help')
360			psub('logout - to log out')
361			ph_center('Options:')
362			ph_center2('Option')
363			pbr()
364			poption('native pdb', 'on')
365			poption('native pdb', 'off')
366			pbr()
367			poption('native pdb', True)
368			poption('native pdb', False)
369			pbr()
370			poption('native pdb', 'any text')
371			poption('native pdb', bool('any text'))
372			poption('native pdb', '')
373

mmagnus / rna-tools

poption() C last analyzed 2025-03-19 22:26 UTC

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poption() C
last analyzed 2025-03-19 22:26 UTC