Code Quality Summary - mmagnus/rna-tools - Measure and Improve Code Quality continuously with Scrutinizer

2025-12-11 14:59 UTC

Inspected Add files via upload

	10 issues (4 minor, 6 informational) were introduced.
	31 added classes/operations
		F	build.rna_tools.tools.PyMOL4RNA.libs.pymol_daslab.color_by_data() added
		F	build.rna_tools.tools.PyMOL4RNA.libs.pymol_daslab added
		C	build.rna_tools.tools.PyMOL4RNA.libs.pymol_daslab.align_all() added
		A	build.rna_tools.tools.PyMOL4RNA.libs.pymol_daslab.render_cartoon() added
		A	build.rna_tools.tools.PyMOL4RNA.libs.pymol_daslab.rr2() added
		A	build.rna_tools.tools.PyMOL4RNA.libs.pymol_daslab.render_rna_sticks() added
		A	build.rna_tools.tools.PyMOL4RNA.libs.pymol_daslab.render_rhiju() added
		A	build.rna_tools.tools.PyMOL4RNA.libs.pymol_daslab.render_rna() added
		A	build.rna_tools.tools.PyMOL4RNA.libs.pymol_daslab.rcd() added
		A	build.rna_tools.tools.PyMOL4RNA.libs.pymol_daslab.render_molecules() added
view all

2025-12-11 14:15 UTC

Inspected Update PyMOL4RNA.py

Good job, 1 issue was fixed.

2025-12-08 15:37 UTC

Inspected rna_calc_evo_rmsd: make auto s...

	7 added classes/operations
		B	build.rna_tools.tools.rna_calc_evo_rmsd.RNAmodel.RNAmodel._get_base_at... added
		B	build.rna_tools.tools.rna_calc_evo_rmsd.RNAalignment.RNAalignment._bui... added
		A	build.rna_tools.tools.rna_calc_evo_rmsd.RNAmodel.get_atom_selection_su... added
		A	build.rna_tools.tools.rna_calc_evo_rmsd.RNAmodel.RNAmodel._append_atom... added
		A	build.rna_tools.tools.rna_calc_evo_rmsd.RNAmodel.RNAmodel._get_matched... added
		A	build.rna_tools.tools.rna_calc_evo_rmsd.RNAalignment.RNAalignment._get... added
		A	build.rna_tools.tools.rna_calc_evo_rmsd.RNAalignment.RNAalignment._inc... added
A	↘	B	build.rna_tools.tools.rna_calc_evo_rmsd.RNAmodel.RNAmodel.__get_atoms(... got worse
B	↘	C	build.rna_tools.tools.rna_calc_evo_rmsd.rna_calc_evo_rmsd.calc_evo_rms... got worse
B	↘	C	build.rna_tools.tools.rna_calc_evo_rmsd.RNAalignment.RNAalignment.get_... got worse
B	↗	A	build.rna_tools.tools.rna_calc_evo_rmsd.RNAmodel.RNAmodel.get_rmsd_to(... improved

2025-07-29 00:29 UTC

Inspected rna_seq_identity: prototype

	1 added class/operation
		A	pairwase added

2025-07-17 00:52 UTC

Inspected pymol4rna: align_all_vs_all as...

1 issue (minor) was introduced.
1 added class/operation
	B	build.rna_tools.tools.PyMOL4RNA.PyMOL4RNA.align_all_vs_all() added

2025-07-14 17:16 UTC

Inspected rmsd: rna_calc_rmsd_pymol.py t...

Good job, 1 issue was fixed.

2025-07-09 22:47 UTC

Inspected refactor rna_calc_rmsd_pymol.p...

12 issues (5 minor, 4 informational, 3 unknown) were introduced.
6 added classes/operations
	B	build.rna_tools.tools.rna_calc_rmsd.rna_calc_rmsd_pymol.calc_rmsd() added
	A	build.rna_tools.tools.rna_calc_rmsd.rna_calc_rmsd_pymol.calc_rmsd_pymo... added
	B	build.rna_tools.tools.rna_calc_rmsd.rna_calc_rmsd_pymol.get_parser() added
	A	build.rna_tools.tools.rna_calc_rmsd.rna_calc_rmsd_pymol.get_rna_models... added
	A	build.rna_tools.tools.rna_calc_rmsd.rna_calc_rmsd_pymol.sort_nicely() added
	A	build.rna_tools.tools.rna_calc_rmsd.rna_calc_rmsd_pymol added

2025-03-19 22:26 UTC

Inspected Merge branch 'master' of githu...

2 issues (2 informational) were introduced.
1 added class/operation
	A	build.rna_tools.tools.PyMOL4RNA.PyMOL4RNA.rgyrate() added

2025-02-21 23:51 UTC

Inspected c

1 issue (minor) was introduced.

2025-02-08 02:20 UTC

Inspected rna_pdb_tools: --conect-no-lin...

1 issue (unknown) was introduced.
1 added class/operation
	D	build.rna_tools.rna_tools_lib.generate_conect_records() added

2024-12-29 16:30 UTC

Inspected rna_tools/tools/rna_rfam/rna_d...

3 added classes/operations
	A	rna_download_rfam.process_rfam() added
	A	rna_download_rfam.get_parser() added
	A	rna_download_rfam added

2024-12-13 23:46 UTC

Inspected rna_align_coverage.py

2 added classes/operations
	A	build.rna_tools.tools.rna_alignment.rna_align_coverage.get_parser() added
	A	build.rna_tools.tools.rna_alignment.rna_align_coverage added

2024-12-09 21:50 UTC

Inspected rna_tools/rna_cif2pdb.py: "fil...

1 issue (informational) was introduced.
2 added classes/operations
	A	build.rna_tools.rna_pdb_seq.get_parser() added
	A	build.rna_tools.rna_pdb_seq added

2024-12-04 16:06 UTC

Inspected add rna_tools/rna_pdb_fetch_he...

3 added classes/operations
	A	build.rna_tools.rna_pdb_fetch_header.get_parser() added
	A	build.rna_tools.rna_pdb_fetch_header.fetch_pdb_header() added
	A	build.rna_tools.rna_pdb_fetch_header added