@@ -195,14 +195,14 @@ discard block |
||
195 | 195 | $query = DB::table('maj_admintasks') |
196 | 196 | ->select() |
197 | 197 | ->where('majat_status', '=', 'enabled') |
198 | - ->where(function (Builder $query): void { |
|
198 | + ->where(function(Builder $query): void { |
|
199 | 199 | |
200 | 200 | $query->where('majat_running', '=', 0) |
201 | 201 | ->orWhere('majat_last_run', '<=', Carbon::now()->subSeconds(self::TASK_TIME_OUT)); |
202 | 202 | }); |
203 | 203 | |
204 | 204 | if (!$force) { |
205 | - $query->where(function (Builder $query): void { |
|
205 | + $query->where(function(Builder $query): void { |
|
206 | 206 | |
207 | 207 | $query->where('majat_running', '=', 0) |
208 | 208 | ->orWhereRaw('DATE_ADD(majat_last_run, INTERVAL majat_frequency MINUTE) <= NOW()'); |
@@ -268,17 +268,17 @@ discard block |
||
268 | 268 | */ |
269 | 269 | public static function rowMapper(): Closure |
270 | 270 | { |
271 | - return static function (stdClass $row): TaskSchedule { |
|
271 | + return static function(stdClass $row): TaskSchedule { |
|
272 | 272 | |
273 | 273 | return new TaskSchedule( |
274 | - (int) $row->majat_id, |
|
274 | + (int)$row->majat_id, |
|
275 | 275 | $row->majat_task_id, |
276 | 276 | $row->majat_status === 'enabled', |
277 | 277 | Carbon::parse($row->majat_last_run), |
278 | - (bool) $row->majat_last_result, |
|
278 | + (bool)$row->majat_last_result, |
|
279 | 279 | CarbonInterval::minutes($row->majat_frequency), |
280 | - (int) $row->majat_nb_occur, |
|
281 | - (bool) $row->majat_running |
|
280 | + (int)$row->majat_nb_occur, |
|
281 | + (bool)$row->majat_running |
|
282 | 282 | ); |
283 | 283 | }; |
284 | 284 | } |
@@ -79,7 +79,7 @@ discard block |
||
79 | 79 | public function changesByRecordType(Tree $tree, int $nb_days): Collection |
80 | 80 | { |
81 | 81 | return DB::table('change') |
82 | - ->joinSub($this->allGedcomRecords($tree), 'gedrecords', function (JoinClause $join) use ($tree): void { |
|
82 | + ->joinSub($this->allGedcomRecords($tree), 'gedrecords', function(JoinClause $join) use ($tree): void { |
|
83 | 83 | |
84 | 84 | $join->on('change.xref', '=', 'gedrecords.ged_id') |
85 | 85 | ->where('change.gedcom_id', '=', $tree->id()); |
@@ -115,7 +115,7 @@ discard block |
||
115 | 115 | new Expression('MAX(log_time) AS lastoccurred') |
116 | 116 | ) |
117 | 117 | ->where('log_type', '=', 'error') |
118 | - ->where(function (Builder $query) use ($tree): void { |
|
118 | + ->where(function(Builder $query) use ($tree): void { |
|
119 | 119 | $query->where('gedcom_id', '=', $tree->id()) |
120 | 120 | ->orWhereNull('gedcom_id'); |
121 | 121 | }) |
@@ -58,12 +58,12 @@ |
||
58 | 58 | assert($tree instanceof Tree); |
59 | 59 | |
60 | 60 | $params = $request->getParsedBody(); |
61 | - $user_id = (int) $params['sosa-userid']; |
|
61 | + $user_id = (int)$params['sosa-userid']; |
|
62 | 62 | $root_id = $params['sosa-rootid'] ?? ''; |
63 | 63 | |
64 | - if(Auth::id() == $user_id || ($user_id == -1 && Auth::isManager($tree))) { |
|
64 | + if (Auth::id() == $user_id || ($user_id == -1 && Auth::isManager($tree))) { |
|
65 | 65 | $user = $user_id == -1 ? new DefaultUser() : $this->user_service->find($user_id); |
66 | - if($user !== null && $root_indi = Registry::individualFactory()->make($root_id, $tree)) { |
|
66 | + if ($user !== null && $root_indi = Registry::individualFactory()->make($root_id, $tree)) { |
|
67 | 67 | $tree->setUserPreference($user, 'MAJ_SOSA_ROOT_ID', $root_indi->xref()); |
68 | 68 | FlashMessages::addMessage(I18N::translate('The root individual has been updated.')); |
69 | 69 | return redirect(route(SosaConfig::class, [ |
@@ -70,7 +70,7 @@ discard block |
||
70 | 70 | /** @var SosaStatisticsService $sosa_stats_service */ |
71 | 71 | $sosa_stats_service = app()->makeWith(SosaStatisticsService::class, ['tree' => $tree, 'user' => $user]); |
72 | 72 | |
73 | - return $this->viewResponse($this->module->name() . '::statistics-page', [ |
|
73 | + return $this->viewResponse($this->module->name().'::statistics-page', [ |
|
74 | 74 | 'module_name' => $this->module->name(), |
75 | 75 | 'title' => I18N::translate('Sosa Statistics'), |
76 | 76 | 'tree' => $tree, |
@@ -121,8 +121,8 @@ discard block |
||
121 | 121 | |
122 | 122 | $generation_stats = array(); |
123 | 123 | |
124 | - foreach($stats_by_gen as $gen => $stats_gen){ |
|
125 | - $gen_diff = $gen > 1 ?$stats_gen['diffSosaTotalCount'] - $stats_by_gen[$gen - 1]['diffSosaTotalCount'] : 1; |
|
124 | + foreach ($stats_by_gen as $gen => $stats_gen) { |
|
125 | + $gen_diff = $gen > 1 ? $stats_gen['diffSosaTotalCount'] - $stats_by_gen[$gen - 1]['diffSosaTotalCount'] : 1; |
|
126 | 126 | $generation_stats[$gen] = array( |
127 | 127 | 'gen_min_birth' => $stats_gen['firstBirth'] ?? $stats_gen['firstEstimatedBirth'], |
128 | 128 | 'gen_max_birth' => $stats_gen['lastBirth'] ?? $stats_gen['lastEstimatedBirth'], |
@@ -130,7 +130,7 @@ discard block |
||
130 | 130 | 'known' => $stats_gen['sosaCount'], |
131 | 131 | 'perc_known' => $this->safeDivision($stats_gen['sosaCount'], pow(2, $gen - 1)), |
132 | 132 | 'missing' => $gen > 1 ? 2 * $stats_by_gen[$gen - 1]['sosaCount'] - $stats_gen['sosaCount'] : 0, |
133 | - 'perc_missing' => $gen > 1 ? 1 - $this->safeDivision($stats_gen['sosaCount'], 2 * $stats_by_gen[$gen - 1]['sosaCount']) : 0, |
|
133 | + 'perc_missing' => $gen > 1 ? 1 - $this->safeDivision($stats_gen['sosaCount'], 2 * $stats_by_gen[$gen - 1]['sosaCount']) : 0, |
|
134 | 134 | 'total_known' => $stats_gen['sosaTotalCount'], |
135 | 135 | 'perc_total_known' => $this->safeDivision($stats_gen['sosaTotalCount'], pow(2, $gen) - 1), |
136 | 136 | 'different' => $gen_diff, |
@@ -56,16 +56,16 @@ |
||
56 | 56 | $tree = $request->getAttribute('tree'); |
57 | 57 | assert($tree instanceof Tree); |
58 | 58 | |
59 | - $user_id = (int) ($request->getParsedBody()['user_id'] ?? 0); |
|
59 | + $user_id = (int)($request->getParsedBody()['user_id'] ?? 0); |
|
60 | 60 | $partial_from = $request->getParsedBody()['partial_from'] ?? null; |
61 | 61 | |
62 | - if(($user_id == -1 && Auth::isManager($tree)) || Auth::id() == $user_id) { |
|
62 | + if (($user_id == -1 && Auth::isManager($tree)) || Auth::id() == $user_id) { |
|
63 | 63 | $user = $user_id == -1 ? new DefaultUser() : $this->user_service->find($user_id); |
64 | 64 | |
65 | 65 | /** @var SosaCalculatorService $sosa_calc_service */ |
66 | - $sosa_calc_service = app()->makeWith(SosaCalculatorService::class, [ 'tree' => $tree, 'user' => $user]); |
|
66 | + $sosa_calc_service = app()->makeWith(SosaCalculatorService::class, ['tree' => $tree, 'user' => $user]); |
|
67 | 67 | |
68 | - if($partial_from !== null && $sosa_from = Registry::individualFactory()->make($partial_from, $tree)) { |
|
68 | + if ($partial_from !== null && $sosa_from = Registry::individualFactory()->make($partial_from, $tree)) { |
|
69 | 69 | $res = $sosa_calc_service->computeFromIndividual($sosa_from); |
70 | 70 | } else { |
71 | 71 | $res = $sosa_calc_service->computeAll(); |
@@ -65,23 +65,23 @@ |
||
65 | 65 | assert($tree instanceof Tree); |
66 | 66 | |
67 | 67 | $users_root = array(); |
68 | - if(Auth::check()) { |
|
68 | + if (Auth::check()) { |
|
69 | 69 | /** @var \Fisharebest\Webtrees\User $user */ |
70 | 70 | $user = Auth::user(); |
71 | 71 | $users_root[] = ['user' => $user, 'root_id' => $tree->getUserPreference($user, 'MAJ_SOSA_ROOT_ID')]; |
72 | 72 | |
73 | - if(Auth::isManager($tree)) { |
|
73 | + if (Auth::isManager($tree)) { |
|
74 | 74 | $default_user = new DefaultUser(); |
75 | 75 | $users_root[] = ['user' => $default_user, 'root_id' => $tree->getUserPreference($default_user, 'MAJ_SOSA_ROOT_ID')]; |
76 | 76 | } |
77 | 77 | } |
78 | 78 | |
79 | - return $this->viewResponse($this->module->name() . '::config-page', [ |
|
79 | + return $this->viewResponse($this->module->name().'::config-page', [ |
|
80 | 80 | 'module_name' => $this->module->name(), |
81 | 81 | 'title' => I18N::translate('Sosa Configuration'), |
82 | 82 | 'tree' => $tree, |
83 | 83 | 'user_id' => $request->getAttribute('user'), |
84 | - 'selected_user_id' => (int) ($request->getQueryParams()['user_id'] ?? 0), |
|
84 | + 'selected_user_id' => (int)($request->getQueryParams()['user_id'] ?? 0), |
|
85 | 85 | 'immediate_compute' => ($request->getQueryParams()['compute'] ?? '') == 'yes', |
86 | 86 | 'users_root' => $users_root |
87 | 87 | ]); |
@@ -33,7 +33,7 @@ |
||
33 | 33 | // Clean up previous sosa table if it exists |
34 | 34 | DB::schema()->dropIfExists('maj_sosa'); |
35 | 35 | |
36 | - DB::schema()->create('maj_sosa', static function (Blueprint $table): void { |
|
36 | + DB::schema()->create('maj_sosa', static function(Blueprint $table): void { |
|
37 | 37 | |
38 | 38 | $table->integer('majs_gedcom_id'); |
39 | 39 | $table->integer('majs_user_id')->default(-1); |
@@ -41,7 +41,7 @@ discard block |
||
41 | 41 | */ |
42 | 42 | public function generation(int $sosa) : int |
43 | 43 | { |
44 | - return (int) log($sosa, 2) + 1; |
|
44 | + return (int)log($sosa, 2) + 1; |
|
45 | 45 | } |
46 | 46 | |
47 | 47 | /** |
@@ -105,10 +105,10 @@ discard block |
||
105 | 105 | $mass_update = DB::connection()->getDriverName() === 'mysql'; |
106 | 106 | |
107 | 107 | $bindings_placeholders = $bindings_values = []; |
108 | - foreach($sosa_records as $i => $row) { |
|
108 | + foreach ($sosa_records as $i => $row) { |
|
109 | 109 | $gen = $this->generation($row['sosa']); |
110 | - if($gen <= self::MAX_DB_GENERATIONS) { |
|
111 | - if($mass_update) { |
|
110 | + if ($gen <= self::MAX_DB_GENERATIONS) { |
|
111 | + if ($mass_update) { |
|
112 | 112 | $bindings_placeholders[] = '(:tree_id'.$i.', :user_id'.$i.', :sosa'.$i.','. |
113 | 113 | ' :indi_id'.$i.', :gen'.$i.', :byear'.$i.', :byearest'.$i.', :dyear'.$i.', :dyearest'.$i.')'; |
114 | 114 | $bindings_values = array_merge( |
@@ -126,7 +126,7 @@ discard block |
||
126 | 126 | ]); |
127 | 127 | } else { |
128 | 128 | DB::table('maj_sosa')->updateOrInsert( |
129 | - [ 'majs_gedcom_id' => $tree->id(), 'majs_user_id' => $user->id(), 'majs_sosa' => $row['sosa']], |
|
129 | + ['majs_gedcom_id' => $tree->id(), 'majs_user_id' => $user->id(), 'majs_sosa' => $row['sosa']], |
|
130 | 130 | [ |
131 | 131 | 'majs_i_id' => $row['indi'], |
132 | 132 | 'majs_gen' => $gen, |
@@ -139,14 +139,14 @@ discard block |
||
139 | 139 | } |
140 | 140 | } |
141 | 141 | |
142 | - if($mass_update) { |
|
142 | + if ($mass_update) { |
|
143 | 143 | DB::connection()->statement( |
144 | - 'INSERT INTO `' . DB::connection()->getTablePrefix() . 'maj_sosa`' . |
|
145 | - ' (majs_gedcom_id, majs_user_id, majs_sosa,' . |
|
146 | - ' majs_i_id, majs_gen, majs_birth_year, majs_birth_year_est, majs_death_year, majs_death_year_est)' . |
|
147 | - ' VALUES ' . implode(',', $bindings_placeholders) . |
|
148 | - ' ON DUPLICATE KEY UPDATE majs_i_id = VALUES(majs_i_id), majs_gen = VALUES(majs_gen),' . |
|
149 | - ' majs_birth_year = VALUES(majs_birth_year), majs_birth_year_est = VALUES(majs_birth_year_est),' . |
|
144 | + 'INSERT INTO `'.DB::connection()->getTablePrefix().'maj_sosa`'. |
|
145 | + ' (majs_gedcom_id, majs_user_id, majs_sosa,'. |
|
146 | + ' majs_i_id, majs_gen, majs_birth_year, majs_birth_year_est, majs_death_year, majs_death_year_est)'. |
|
147 | + ' VALUES '.implode(',', $bindings_placeholders). |
|
148 | + ' ON DUPLICATE KEY UPDATE majs_i_id = VALUES(majs_i_id), majs_gen = VALUES(majs_gen),'. |
|
149 | + ' majs_birth_year = VALUES(majs_birth_year), majs_birth_year_est = VALUES(majs_birth_year_est),'. |
|
150 | 150 | ' majs_death_year = VALUES(majs_death_year), majs_death_year_est = VALUES(majs_death_year_est)', |
151 | 151 | $bindings_values); |
152 | 152 | } |
@@ -122,8 +122,7 @@ discard block |
||
122 | 122 | ->selectRaw('SUM(majs_gen * majs_gen) AS sum_x2') |
123 | 123 | ->get()->first(); |
124 | 124 | |
125 | - return $row->n == 0 ? 0 : |
|
126 | - -($row->n * $row->sum_xy - $row->sum_x * $row->sum_y) / ($row->n * $row->sum_x2 - pow($row->sum_x, 2)); |
|
125 | + return $row->n == 0 ? 0 : -($row->n * $row->sum_xy - $row->sum_x * $row->sum_y) / ($row->n * $row->sum_x2 - pow($row->sum_x, 2)); |
|
127 | 126 | } |
128 | 127 | |
129 | 128 | /** |
@@ -146,11 +145,11 @@ discard block |
||
146 | 145 | $cumul_stats_by_gen = $this->statisticsByGenerationCumulativeData(); |
147 | 146 | |
148 | 147 | $statistics_by_gen = []; |
149 | - foreach($stats_by_gen as $gen => $stats_gen) { |
|
150 | - $statistics_by_gen[(int) $stats_gen->gen] = array( |
|
151 | - 'sosaCount' => (int) $stats_gen->total_sosa, |
|
152 | - 'sosaTotalCount' => (int) $cumul_stats_by_gen[$gen]->total_cumul, |
|
153 | - 'diffSosaTotalCount' => (int) $cumul_stats_by_gen[$gen]->total_distinct_cumul, |
|
148 | + foreach ($stats_by_gen as $gen => $stats_gen) { |
|
149 | + $statistics_by_gen[(int)$stats_gen->gen] = array( |
|
150 | + 'sosaCount' => (int)$stats_gen->total_sosa, |
|
151 | + 'sosaTotalCount' => (int)$cumul_stats_by_gen[$gen]->total_cumul, |
|
152 | + 'diffSosaTotalCount' => (int)$cumul_stats_by_gen[$gen]->total_distinct_cumul, |
|
154 | 153 | 'firstBirth' => $stats_gen->first_year, |
155 | 154 | 'firstEstimatedBirth' => $stats_gen->first_est_year, |
156 | 155 | 'lastBirth' => $stats_gen->last_year, |
@@ -228,17 +227,17 @@ discard block |
||
228 | 227 | { |
229 | 228 | $table_prefix = DB::connection()->getTablePrefix(); |
230 | 229 | $missing_ancestors_by_gen = DB::table('maj_sosa AS sosa') |
231 | - ->selectRaw($table_prefix. 'sosa.majs_gen - ? AS majs_gen_norm', [$gen]) |
|
232 | - ->selectRaw('FLOOR(((' . $table_prefix .'sosa.majs_sosa / POW(2, ' . $table_prefix .'sosa.majs_gen -1 )) - 1) * POWER(2, ? - 1)) + POWER(2, ? - 1) AS root_ancestor', [$gen, $gen]) |
|
233 | - ->selectRaw('SUM(CASE WHEN ' . $table_prefix .'sosa_fat.majs_i_id IS NULL AND ' . $table_prefix .'sosa_mot.majs_i_id IS NULL THEN 1 ELSE 0 END) AS full_root_count') |
|
234 | - ->selectRaw('SUM(CASE WHEN ' . $table_prefix .'sosa_fat.majs_i_id IS NULL AND ' . $table_prefix .'sosa_mot.majs_i_id IS NULL THEN 0 ELSE 1 END) As semi_root_count') |
|
230 | + ->selectRaw($table_prefix.'sosa.majs_gen - ? AS majs_gen_norm', [$gen]) |
|
231 | + ->selectRaw('FLOOR((('.$table_prefix.'sosa.majs_sosa / POW(2, '.$table_prefix.'sosa.majs_gen -1 )) - 1) * POWER(2, ? - 1)) + POWER(2, ? - 1) AS root_ancestor', [$gen, $gen]) |
|
232 | + ->selectRaw('SUM(CASE WHEN '.$table_prefix.'sosa_fat.majs_i_id IS NULL AND '.$table_prefix.'sosa_mot.majs_i_id IS NULL THEN 1 ELSE 0 END) AS full_root_count') |
|
233 | + ->selectRaw('SUM(CASE WHEN '.$table_prefix.'sosa_fat.majs_i_id IS NULL AND '.$table_prefix.'sosa_mot.majs_i_id IS NULL THEN 0 ELSE 1 END) As semi_root_count') |
|
235 | 234 | ->leftJoin('maj_sosa AS sosa_fat', function(JoinClause $join) use ($table_prefix) : void { // Link to sosa's father |
236 | - $join->whereRaw($table_prefix . 'sosa_fat.majs_sosa = 2 * ' . $table_prefix . 'sosa.majs_sosa') |
|
235 | + $join->whereRaw($table_prefix.'sosa_fat.majs_sosa = 2 * '.$table_prefix.'sosa.majs_sosa') |
|
237 | 236 | ->where('sosa_fat.majs_gedcom_id', '=', $this->tree->id()) |
238 | 237 | ->where('sosa_fat.majs_user_id', '=', $this->user->id()); |
239 | 238 | }) |
240 | 239 | ->leftJoin('maj_sosa AS sosa_mot', function(JoinClause $join) use ($table_prefix) : void { // Link to sosa's mother |
241 | - $join->whereRaw($table_prefix . 'sosa_mot.majs_sosa = 2 * ' . $table_prefix . 'sosa.majs_sosa + 1') |
|
240 | + $join->whereRaw($table_prefix.'sosa_mot.majs_sosa = 2 * '.$table_prefix.'sosa.majs_sosa + 1') |
|
242 | 241 | ->where('sosa_mot.majs_gedcom_id', '=', $this->tree->id()) |
243 | 242 | ->where('sosa_mot.majs_user_id', '=', $this->user->id()); |
244 | 243 | }) |
@@ -287,14 +286,14 @@ discard block |
||
287 | 286 | $table_prefix = DB::connection()->getTablePrefix(); |
288 | 287 | $multiple_ancestors = DB::table('maj_sosa AS sosa') |
289 | 288 | ->select('sosa.majs_i_id AS sosa_i_id') |
290 | - ->selectRaw('COUNT('. $table_prefix .'sosa.majs_sosa) AS sosa_count') |
|
289 | + ->selectRaw('COUNT('.$table_prefix.'sosa.majs_sosa) AS sosa_count') |
|
291 | 290 | ->leftJoin('maj_sosa AS sosa_fat', function(JoinClause $join) use ($table_prefix) : void { // Link to sosa's father |
292 | - $join->whereRaw($table_prefix . 'sosa_fat.majs_sosa = 2 * ' . $table_prefix . 'sosa.majs_sosa') |
|
291 | + $join->whereRaw($table_prefix.'sosa_fat.majs_sosa = 2 * '.$table_prefix.'sosa.majs_sosa') |
|
293 | 292 | ->where('sosa_fat.majs_gedcom_id', '=', $this->tree->id()) |
294 | 293 | ->where('sosa_fat.majs_user_id', '=', $this->user->id()); |
295 | 294 | }) |
296 | 295 | ->leftJoin('maj_sosa AS sosa_mot', function(JoinClause $join) use ($table_prefix) : void { // Link to sosa's mother |
297 | - $join->whereRaw($table_prefix . 'sosa_mot.majs_sosa = 2 * ' . $table_prefix . 'sosa.majs_sosa + 1') |
|
296 | + $join->whereRaw($table_prefix.'sosa_mot.majs_sosa = 2 * '.$table_prefix.'sosa.majs_sosa + 1') |
|
298 | 297 | ->where('sosa_mot.majs_gedcom_id', '=', $this->tree->id()) |
299 | 298 | ->where('sosa_mot.majs_user_id', '=', $this->user->id()); |
300 | 299 | }) |
@@ -303,16 +302,16 @@ discard block |
||
303 | 302 | ->whereNull('sosa_fat.majs_sosa') // We keep only root individuals, i.e. those with no father or mother |
304 | 303 | ->whereNull('sosa_mot.majs_sosa') |
305 | 304 | ->groupBy('sosa.majs_i_id') |
306 | - ->havingRaw('COUNT('. $table_prefix .'sosa.majs_sosa) > 1') // Limit to the duplicate sosas. |
|
307 | - ->orderByRaw('COUNT('. $table_prefix .'sosa.majs_sosa) DESC, MIN('. $table_prefix .'sosa.majs_sosa) ASC') |
|
305 | + ->havingRaw('COUNT('.$table_prefix.'sosa.majs_sosa) > 1') // Limit to the duplicate sosas. |
|
306 | + ->orderByRaw('COUNT('.$table_prefix.'sosa.majs_sosa) DESC, MIN('.$table_prefix.'sosa.majs_sosa) ASC') |
|
308 | 307 | ->limit($limit + 1) // We want to select one more than required, for ties |
309 | 308 | ->get(); |
310 | 309 | |
311 | - if($multiple_ancestors->count() > $limit) |
|
310 | + if ($multiple_ancestors->count() > $limit) |
|
312 | 311 | { |
313 | 312 | $last_count = $multiple_ancestors->last()->sosa_count; |
314 | 313 | $multiple_ancestors = $multiple_ancestors->reject(function($element) use ($last_count) : bool { |
315 | - return $element->sosa_count == $last_count; |
|
314 | + return $element->sosa_count == $last_count; |
|
316 | 315 | }); |
317 | 316 | } |
318 | 317 | return $multiple_ancestors; |