|
1
|
|
|
package br.ufrj.ppgi.greco.kettle.silk; |
|
2
|
|
|
|
|
3
|
|
|
import java.util.ArrayList; |
|
4
|
|
|
import java.util.List; |
|
5
|
|
|
|
|
6
|
|
|
import javax.xml.bind.JAXBContext; |
|
7
|
|
|
import javax.xml.bind.Marshaller; |
|
8
|
|
|
import javax.xml.bind.annotation.XmlElement; |
|
9
|
|
|
import javax.xml.bind.annotation.XmlRootElement; |
|
10
|
|
|
|
|
11
|
|
|
import org.pentaho.di.core.Const; |
|
12
|
|
|
|
|
13
|
|
|
import br.ufrj.ppgi.greco.kettle.LinkDiscoveryToolStepMeta; |
|
14
|
|
|
|
|
15
|
|
|
@XmlRootElement(name = "Silk") |
|
16
|
|
|
public class Silk { |
|
17
|
|
|
|
|
18
|
|
|
@XmlElement(name = "Prefixes") |
|
19
|
|
|
protected Prefixes prefixes = new Prefixes(); |
|
20
|
|
|
|
|
21
|
|
|
@XmlElement(name = "DataSources") |
|
22
|
|
|
protected Datasets dataSources = new Datasets(); |
|
23
|
|
|
|
|
24
|
|
|
@XmlElement(name = "Interlinks") |
|
25
|
|
|
protected Interlinks interlinks = new Interlinks(); |
|
26
|
|
|
|
|
27
|
|
|
@XmlElement(name = "Outputs") |
|
28
|
|
|
protected Datasets outputs = new Datasets(); |
|
29
|
|
|
|
|
30
|
|
|
public Silk() { |
|
31
|
|
|
} |
|
32
|
|
|
|
|
33
|
|
|
public Silk(LinkDiscoveryToolStepMeta input) { |
|
34
|
|
|
this.setPrefixes(input); |
|
35
|
|
|
this.setDataSources(input); |
|
36
|
|
|
this.setInterlinks(input); |
|
37
|
|
|
this.setOutputs(input); |
|
38
|
|
|
} |
|
39
|
|
|
|
|
40
|
|
|
/** |
|
41
|
|
|
* Set the <Prefixes> tag in the Silk SLS file |
|
42
|
|
|
* |
|
43
|
|
|
* @param input |
|
44
|
|
|
* information given by the user on Kettle |
|
45
|
|
|
*/ |
|
46
|
|
|
public void setPrefixes(LinkDiscoveryToolStepMeta input) { |
|
47
|
|
|
final int PREFIX = 0; |
|
48
|
|
|
final int NAMESPACE = 1; |
|
49
|
|
|
for (int i = 0; i < input.getPrefixes().size(); i++) { |
|
50
|
|
|
List<String> prefix = input.getPrefixes().getRow(i); |
|
51
|
|
|
Prefix p = new Prefix(prefix.get(PREFIX), prefix.get(NAMESPACE)); |
|
52
|
|
|
this.prefixes.add(p); |
|
53
|
|
|
} |
|
54
|
|
|
} |
|
55
|
|
|
|
|
56
|
|
|
/** |
|
57
|
|
|
* Set the <DataSources> tag in the Silk SLS file |
|
58
|
|
|
* |
|
59
|
|
|
* @param input |
|
60
|
|
|
* information given by the user on Kettle |
|
61
|
|
|
*/ |
|
62
|
|
|
public void setDataSources(LinkDiscoveryToolStepMeta input) { |
|
63
|
|
|
if (input.isSparqlEndpoint(input.getSourceEndpoint())) { |
|
64
|
|
|
setDataSource(input, Dataset.SPARQL, "source", input.getSourceEndpoint(), input.getSourceGraph()); |
|
65
|
|
|
} else { |
|
66
|
|
|
setDataSource(input, input.getFileType(input.getSourceEndpoint()), "source", input.getSourceEndpoint(), |
|
67
|
|
|
input.getSourceGraph()); |
|
68
|
|
|
} |
|
69
|
|
|
|
|
70
|
|
|
if (input.isSparqlEndpoint(input.getTargetEndpoint())) { |
|
71
|
|
|
setDataSource(input, Dataset.SPARQL, "target", input.getTargetEndpoint(), input.getTargetGraph()); |
|
72
|
|
|
} else { |
|
73
|
|
|
setDataSource(input, input.getFileType(input.getTargetEndpoint()), "target", input.getTargetEndpoint(), |
|
74
|
|
|
input.getTargetGraph()); |
|
75
|
|
|
} |
|
76
|
|
|
} |
|
77
|
|
|
|
|
78
|
|
|
private String getFileFormat(String fileType) { |
|
79
|
|
|
switch (fileType) { |
|
80
|
|
|
case "rdf": |
|
81
|
|
|
return "RDF/XML"; |
|
82
|
|
|
case "ttl": |
|
83
|
|
|
return "Turtle"; |
|
84
|
|
|
case "nt": |
|
85
|
|
|
return "N-Triples"; |
|
86
|
|
|
default: |
|
87
|
|
|
return "RDF/XML"; |
|
88
|
|
|
} |
|
89
|
|
|
} |
|
90
|
|
|
|
|
91
|
|
|
public void setDataSource(LinkDiscoveryToolStepMeta input, String type, String id, String endpoint, String graph) { |
|
92
|
|
|
Dataset source = null; |
|
93
|
|
|
switch (type) { |
|
94
|
|
|
case Dataset.SPARQL: |
|
95
|
|
|
source = new Dataset(id, Dataset.SPARQL); |
|
96
|
|
|
source.add(new Param("endpointURI", Const.NVL(endpoint, ""))); |
|
97
|
|
|
source.add(new Param("graph", Const.NVL(graph, ""))); |
|
98
|
|
|
break; |
|
99
|
|
|
case "rdf": |
|
100
|
|
|
case "ttl": |
|
101
|
|
|
case "nt": |
|
102
|
|
|
source = new Dataset(id, Dataset.RDF); |
|
103
|
|
|
source.add(new Param("file", Const.NVL(endpoint, ""))); |
|
104
|
|
|
source.add(new Param("format", Const.NVL(getFileFormat(type), ""))); |
|
105
|
|
|
source.add(new Param("graph", Const.NVL(graph, ""))); |
|
106
|
|
|
break; |
|
107
|
|
|
case "csv": |
|
108
|
|
|
case "xml": |
|
109
|
|
|
source = new Dataset(id, type); |
|
110
|
|
|
source.add(new Param("file", Const.NVL(endpoint, ""))); |
|
111
|
|
|
break; |
|
112
|
|
|
} |
|
113
|
|
|
this.dataSources.add(source); |
|
114
|
|
|
} |
|
115
|
|
|
|
|
116
|
|
|
/** |
|
117
|
|
|
* Set the <Interlinks> tag in the Silk SLS file |
|
118
|
|
|
* |
|
119
|
|
|
* @param input |
|
120
|
|
|
* information given by the user on Kettle |
|
121
|
|
|
*/ |
|
122
|
|
|
public void setInterlinks(LinkDiscoveryToolStepMeta input) { |
|
123
|
|
|
DataSource src = new DataSource("source", "a", input.getSourceRestriction()); |
|
124
|
|
|
DataSource tgt = new DataSource("target", "b", input.getTargetRestriction()); |
|
125
|
|
|
LinkageRule link = getLinkageRule(input); |
|
126
|
|
|
Outputs outputs = new Outputs(); |
|
127
|
|
|
outputs.addOutput(new Output("output")); |
|
128
|
|
|
Interlink interlink = new Interlink("link", src, tgt, link, outputs); |
|
129
|
|
|
this.interlinks.add(interlink); |
|
130
|
|
|
} |
|
131
|
|
|
|
|
132
|
|
|
/** |
|
133
|
|
|
* Set the <Outputs> tag in the Silk SLS file |
|
134
|
|
|
* |
|
135
|
|
|
* @param input |
|
136
|
|
|
* information given by the user on Kettle |
|
137
|
|
|
*/ |
|
138
|
|
|
public void setOutputs(LinkDiscoveryToolStepMeta input) { |
|
139
|
|
|
Dataset output = null; |
|
140
|
|
|
if (input.isSparqlOutput()){ |
|
141
|
|
|
output = new Dataset("output", Dataset.SPARQL); |
|
142
|
|
|
output.add(new Param("endpointURI", Const.NVL(input.getOutputEndpoint(), ""))); |
|
143
|
|
|
output.add(new Param("graph", Const.NVL(input.getOutputGraph(), ""))); |
|
144
|
|
|
}else{ |
|
145
|
|
|
output = new Dataset("output", "file"); |
|
146
|
|
|
output.add(new Param("file", input.getFilePath())); |
|
147
|
|
|
output.add(new Param("format", "N-Triples")); |
|
148
|
|
|
} |
|
149
|
|
|
this.outputs.add(output); |
|
150
|
|
|
} |
|
151
|
|
|
|
|
152
|
|
|
public List<Metric> getMetrics(LinkDiscoveryToolStepMeta input){ |
|
153
|
|
|
final int SOURCE_PATH = 0, TARGET_PATH = 1, METRIC = 2; |
|
154
|
|
|
List<Metric> metricList = new ArrayList<>(); |
|
155
|
|
|
for (int i = 0; i < input.getMetrics().size(); i++) { |
|
156
|
|
|
List<String> metrics = input.getMetrics().getRow(i); |
|
157
|
|
|
Metric metric = new Metric(i+1, metrics.get(METRIC)); |
|
158
|
|
|
metric.addInput(new Input("sourcePath" + (i+1), metrics.get(SOURCE_PATH))); |
|
159
|
|
|
metric.addInput(new Input("targetPath" + (i+1), metrics.get(TARGET_PATH))); |
|
160
|
|
|
metricList.add(metric); |
|
161
|
|
|
} |
|
162
|
|
|
return metricList; |
|
163
|
|
|
} |
|
164
|
|
|
|
|
165
|
|
|
public Aggregate createAggregation(LinkDiscoveryToolStepMeta input) { |
|
166
|
|
|
Aggregate aggregation = null; |
|
167
|
|
|
boolean hasNoAggregation = input.getMetrics() == null || input.getMetrics().size() == 0 || input.getMetrics().getValue(0, 2).isEmpty(); |
|
168
|
|
|
if (!hasNoAggregation) { |
|
169
|
|
|
aggregation = new Aggregate(input.getAggregationType(), input.getAggregationType()); |
|
170
|
|
|
aggregation.setMetrics(getMetrics(input)); |
|
171
|
|
|
} |
|
172
|
|
|
return aggregation; |
|
173
|
|
|
} |
|
174
|
|
|
|
|
175
|
|
|
private LinkageRule getLinkageRule(LinkDiscoveryToolStepMeta input) { |
|
176
|
|
|
LinkageRule link = new LinkageRule(input.getLinkageType()); |
|
177
|
|
|
if (input.getAggregationType() == null || input.getAggregationType().equals("")){ |
|
178
|
|
|
link.setMetrics(getMetrics(input)); |
|
179
|
|
|
} else { |
|
180
|
|
|
link = new LinkageRule(input.getLinkageType(), createAggregation(input)); |
|
181
|
|
|
} |
|
182
|
|
|
return link; |
|
183
|
|
|
} |
|
184
|
|
|
|
|
185
|
|
|
public static void main(String[] args) { |
|
186
|
|
|
LinkDiscoveryToolStepMeta input = new LinkDiscoveryToolStepMeta(); |
|
187
|
|
|
Silk s = new Silk(input); |
|
188
|
|
|
try { |
|
189
|
|
|
JAXBContext context = JAXBContext.newInstance(Silk.class); |
|
190
|
|
|
Marshaller m = context.createMarshaller(); |
|
191
|
|
|
m.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, Boolean.TRUE); |
|
192
|
|
|
m.marshal(s, System.out); |
|
193
|
|
|
} catch (Exception e) { |
|
194
|
|
|
e.printStackTrace(); |
|
195
|
|
|
} |
|
196
|
|
|
} |
|
197
|
|
|
|
|
198
|
|
|
} |