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package br.ufrj.ppgi.greco.kettle; |
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import java.nio.file.Path; |
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import java.nio.file.Paths; |
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import java.util.List; |
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import java.util.Map; |
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import org.pentaho.di.core.CheckResult; |
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import org.pentaho.di.core.CheckResultInterface; |
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import org.pentaho.di.core.Counter; |
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import org.pentaho.di.core.database.DatabaseMeta; |
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import org.pentaho.di.core.exception.KettleException; |
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import org.pentaho.di.core.exception.KettleStepException; |
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import org.pentaho.di.core.exception.KettleXMLException; |
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import org.pentaho.di.core.row.RowMetaInterface; |
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import org.pentaho.di.core.row.ValueMetaInterface; |
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import org.pentaho.di.core.row.value.ValueMetaString; |
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import org.pentaho.di.core.variables.VariableSpace; |
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import org.pentaho.di.core.xml.XMLHandler; |
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import org.pentaho.di.repository.ObjectId; |
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import org.pentaho.di.repository.Repository; |
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import org.pentaho.di.trans.Trans; |
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import org.pentaho.di.trans.TransMeta; |
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import org.pentaho.di.trans.step.BaseStepMeta; |
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import org.pentaho.di.trans.step.StepDataInterface; |
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import org.pentaho.di.trans.step.StepInterface; |
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import org.pentaho.di.trans.step.StepMeta; |
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import org.pentaho.di.trans.step.StepMetaInterface; |
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import org.w3c.dom.Node; |
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import br.ufrj.ppgi.greco.kettle.plugin.tools.datatable.DataTable; |
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import br.ufrj.ppgi.greco.kettle.plugin.tools.datatable.DataTableConverter; |
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import com.thoughtworks.xstream.XStream; |
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import com.thoughtworks.xstream.io.xml.DomDriver; |
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public class LinkDiscoveryToolStepMeta extends BaseStepMeta implements StepMetaInterface { |
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public enum Field { |
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CONFIG_FILE, |
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// Data Sources |
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SOURCE_ENDPOINT, SOURCE_GRAPH, SOURCE_RESTRICTION, TARGET_ENDPOINT, TARGET_GRAPH, TARGET_RESTRICTION, |
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// Prefixes |
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PREFIXES_TABLE, PREFIXES_TABLE_PREFIX, PREFIXES_TABLE_NAMESPACE, |
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// Linkage Rules |
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LINKAGE_TYPE, AGGREGATION_TYPE, METRICS_TABLE, METRICS_TABLE_SOURCE, METRICS_TABLE_TARGET, METRICS_TABLE_METRIC, |
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// Output |
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OUTPUT_FOLDER, OUTPUT_FILENAME, OUTPUT_GRAPH, OUTPUT_SPARQL, OUTPUT_ENDPOINT |
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} |
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private String configFile; |
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private String sourceEndpoint; |
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private String sourceGraph; |
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private String sourceRestriction; |
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private String targetEndpoint; |
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private String targetGraph; |
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private String targetRestriction; |
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private DataTable<String> prefixes; |
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private String linkageType; |
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private String aggregationType; |
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private DataTable<String> metrics; |
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private boolean sparqlOutput; |
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private String outputFolder; |
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private String outputFilename; |
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private String outputGraph; |
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private String outputEndpoint; |
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public LinkDiscoveryToolStepMeta() { |
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setDefault(); |
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} |
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@Override |
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public void check(List<CheckResultInterface> remarks, TransMeta transMeta, StepMeta stepMeta, RowMetaInterface prev, |
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String[] input, String[] output, RowMetaInterface info) { |
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CheckResultInterface ok = new CheckResult(CheckResult.TYPE_RESULT_OK, "", stepMeta); |
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remarks.add(ok); |
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} |
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public StepInterface getStep(StepMeta stepMeta, StepDataInterface stepDataInterface, int copyNr, |
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TransMeta transMeta, Trans trans) { |
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return new LinkDiscoveryToolStep(stepMeta, stepDataInterface, copyNr, transMeta, trans); |
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} |
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public StepDataInterface getStepData() { |
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return new LinkDiscoveryToolStepData(); |
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} |
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@Override |
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public String getDialogClassName() { |
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return LinkDiscoveryToolStepDialog.class.getName(); |
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} |
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@SuppressWarnings("unchecked") |
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@Override |
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public void loadXML(Node stepDomNode, List<DatabaseMeta> databases, Map<String, Counter> sequenceCounters) |
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throws KettleXMLException { |
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try { |
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XStream xs = new XStream(new DomDriver()); |
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xs.alias("DataTable", DataTable.class); |
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xs.registerConverter(new DataTableConverter()); |
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this.configFile = (String) XMLHandler.getTagValue(stepDomNode, Field.CONFIG_FILE.name()); |
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this.sourceEndpoint = (String) XMLHandler.getTagValue(stepDomNode, Field.SOURCE_ENDPOINT.name()); |
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this.sourceGraph = (String) XMLHandler.getTagValue(stepDomNode, Field.SOURCE_GRAPH.name()); |
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this.sourceRestriction = (String) XMLHandler.getTagValue(stepDomNode, Field.SOURCE_RESTRICTION.name()); |
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this.targetEndpoint = (String) XMLHandler.getTagValue(stepDomNode, Field.TARGET_ENDPOINT.name()); |
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this.targetGraph = (String) XMLHandler.getTagValue(stepDomNode, Field.TARGET_GRAPH.name()); |
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this.targetRestriction = (String) XMLHandler.getTagValue(stepDomNode, Field.TARGET_RESTRICTION.name()); |
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this.prefixes = (DataTable<String>) xs |
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.fromXML(XMLHandler.getTagValue(stepDomNode, Field.PREFIXES_TABLE.name())); |
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this.linkageType = (String) XMLHandler.getTagValue(stepDomNode, Field.LINKAGE_TYPE.name()); |
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this.aggregationType = (String) XMLHandler.getTagValue(stepDomNode, Field.AGGREGATION_TYPE.name()); |
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this.metrics = (DataTable<String>) xs |
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.fromXML(XMLHandler.getTagValue(stepDomNode, Field.METRICS_TABLE.name())); |
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this.sparqlOutput = "Y".equals(XMLHandler.getTagValue(stepDomNode, Field.OUTPUT_SPARQL.name())); |
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this.outputFolder = (String) XMLHandler.getTagValue(stepDomNode, Field.OUTPUT_FOLDER.name()); |
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this.outputFilename = (String) XMLHandler.getTagValue(stepDomNode, Field.OUTPUT_FILENAME.name()); |
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this.outputEndpoint = (String) XMLHandler.getTagValue(stepDomNode, Field.OUTPUT_ENDPOINT.name()); |
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this.outputGraph = (String) XMLHandler.getTagValue(stepDomNode, Field.OUTPUT_GRAPH.name()); |
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} catch (Throwable e) { |
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e.printStackTrace(); |
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} |
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} |
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@Override |
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public String getXML() throws KettleException { |
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XStream xs = new XStream(new DomDriver()); |
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xs.alias("DataTable", DataTable.class); |
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xs.registerConverter(new DataTableConverter()); |
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StringBuilder xml = new StringBuilder(); |
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xml.append(XMLHandler.addTagValue(Field.CONFIG_FILE.name(), this.configFile)); |
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xml.append(XMLHandler.addTagValue(Field.SOURCE_ENDPOINT.name(), this.sourceEndpoint)); |
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xml.append(XMLHandler.addTagValue(Field.SOURCE_GRAPH.name(), this.sourceGraph)); |
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xml.append(XMLHandler.addTagValue(Field.SOURCE_RESTRICTION.name(), this.sourceRestriction)); |
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xml.append(XMLHandler.addTagValue(Field.TARGET_ENDPOINT.name(), this.targetEndpoint)); |
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xml.append(XMLHandler.addTagValue(Field.TARGET_GRAPH.name(), this.targetGraph)); |
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xml.append(XMLHandler.addTagValue(Field.TARGET_RESTRICTION.name(), this.targetRestriction)); |
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xml.append(XMLHandler.addTagValue(Field.PREFIXES_TABLE.name(), xs.toXML(this.prefixes))); |
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xml.append(XMLHandler.addTagValue(Field.LINKAGE_TYPE.name(), this.linkageType)); |
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xml.append(XMLHandler.addTagValue(Field.AGGREGATION_TYPE.name(), this.aggregationType)); |
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xml.append(XMLHandler.addTagValue(Field.METRICS_TABLE.name(), xs.toXML(this.metrics))); |
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xml.append(XMLHandler.addTagValue(Field.OUTPUT_SPARQL.name(), this.sparqlOutput)); |
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xml.append(XMLHandler.addTagValue(Field.OUTPUT_FOLDER.name(), this.outputFolder)); |
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xml.append(XMLHandler.addTagValue(Field.OUTPUT_FILENAME.name(), this.outputFilename)); |
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xml.append(XMLHandler.addTagValue(Field.OUTPUT_GRAPH.name(), this.outputGraph)); |
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xml.append(XMLHandler.addTagValue(Field.OUTPUT_ENDPOINT.name(), this.outputEndpoint)); |
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return xml.toString(); |
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} |
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@SuppressWarnings("unchecked") |
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@Override |
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public void readRep(Repository repository, ObjectId stepIdInRepository, List<DatabaseMeta> databases, |
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Map<String, Counter> sequenceCounters) throws KettleException { |
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try { |
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XStream xs = new XStream(new DomDriver()); |
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xs.alias("DataTable", DataTable.class); |
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xs.registerConverter(new DataTableConverter()); |
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this.configFile = repository.getStepAttributeString(stepIdInRepository, Field.CONFIG_FILE.name()); |
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this.sourceEndpoint = repository.getStepAttributeString(stepIdInRepository, Field.SOURCE_ENDPOINT.name()); |
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this.sourceGraph = repository.getStepAttributeString(stepIdInRepository, Field.SOURCE_GRAPH.name()); |
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this.sourceRestriction = repository.getStepAttributeString(stepIdInRepository, |
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Field.SOURCE_RESTRICTION.name()); |
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this.targetEndpoint = repository.getStepAttributeString(stepIdInRepository, Field.TARGET_ENDPOINT.name()); |
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this.targetGraph = repository.getStepAttributeString(stepIdInRepository, Field.TARGET_GRAPH.name()); |
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this.targetRestriction = repository.getStepAttributeString(stepIdInRepository, |
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Field.TARGET_RESTRICTION.name()); |
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this.prefixes = (DataTable<String>) xs |
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.fromXML(repository.getStepAttributeString(stepIdInRepository, Field.PREFIXES_TABLE.name())); |
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this.linkageType = repository.getStepAttributeString(stepIdInRepository, Field.LINKAGE_TYPE.name()); |
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this.aggregationType = (String) repository.getStepAttributeString(stepIdInRepository, |
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Field.AGGREGATION_TYPE.name()); |
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this.metrics = (DataTable<String>) xs |
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.fromXML(repository.getStepAttributeString(stepIdInRepository, Field.METRICS_TABLE.name())); |
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this.sparqlOutput = "Y" |
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.equals(repository.getStepAttributeString(stepIdInRepository, Field.OUTPUT_SPARQL.name())); |
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this.outputFolder = repository.getStepAttributeString(stepIdInRepository, Field.OUTPUT_FOLDER.name()); |
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this.outputFilename = repository.getStepAttributeString(stepIdInRepository, Field.OUTPUT_FILENAME.name()); |
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this.outputGraph = repository.getStepAttributeString(stepIdInRepository, Field.OUTPUT_GRAPH.name()); |
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this.outputEndpoint = repository.getStepAttributeString(stepIdInRepository, Field.OUTPUT_ENDPOINT.name()); |
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} catch (Exception e) { |
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throw new KettleException( |
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"Unable to read step information from the repository for id_step=" + stepIdInRepository, e); |
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} |
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} |
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@Override |
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public void saveRep(Repository repository, ObjectId idOfTransformation, ObjectId idOfStep) throws KettleException { |
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try { |
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XStream xs = new XStream(new DomDriver()); |
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xs.alias("DataTable", DataTable.class); |
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xs.registerConverter(new DataTableConverter()); |
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repository.saveStepAttribute(idOfTransformation, idOfStep, Field.CONFIG_FILE.name(), this.configFile); |
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repository.saveStepAttribute(idOfTransformation, idOfStep, Field.SOURCE_ENDPOINT.name(), |
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this.sourceEndpoint); |
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repository.saveStepAttribute(idOfTransformation, idOfStep, Field.SOURCE_GRAPH.name(), this.sourceGraph); |
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repository.saveStepAttribute(idOfTransformation, idOfStep, Field.SOURCE_RESTRICTION.name(), |
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this.sourceRestriction); |
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235
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repository.saveStepAttribute(idOfTransformation, idOfStep, Field.TARGET_ENDPOINT.name(), |
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this.targetEndpoint); |
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repository.saveStepAttribute(idOfTransformation, idOfStep, Field.TARGET_GRAPH.name(), this.targetGraph); |
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repository.saveStepAttribute(idOfTransformation, idOfStep, Field.TARGET_RESTRICTION.name(), |
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this.targetRestriction); |
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241
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repository.saveStepAttribute(idOfTransformation, idOfStep, Field.PREFIXES_TABLE.name(), |
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xs.toXML(this.prefixes)); |
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244
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repository.saveStepAttribute(idOfTransformation, idOfStep, Field.LINKAGE_TYPE.name(), this.linkageType); |
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repository.saveStepAttribute(idOfTransformation, idOfStep, Field.AGGREGATION_TYPE.name(), |
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this.aggregationType); |
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repository.saveStepAttribute(idOfTransformation, idOfStep, Field.METRICS_TABLE.name(), |
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xs.toXML(this.metrics)); |
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250
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repository.saveStepAttribute(idOfTransformation, idOfStep, Field.OUTPUT_SPARQL.name(), this.sparqlOutput); |
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repository.saveStepAttribute(idOfTransformation, idOfStep, Field.OUTPUT_FOLDER.name(), this.outputFolder); |
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repository.saveStepAttribute(idOfTransformation, idOfStep, Field.OUTPUT_FILENAME.name(), |
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this.outputFilename); |
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repository.saveStepAttribute(idOfTransformation, idOfStep, Field.OUTPUT_GRAPH.name(), this.outputGraph); |
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repository.saveStepAttribute(idOfTransformation, idOfStep, Field.OUTPUT_ENDPOINT.name(), this.outputEndpoint); |
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256
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257
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} catch (Exception e) { |
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throw new KettleException("Unable to save step information to the repository for id_step=" + idOfStep, e); |
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} |
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260
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} |
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261
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262
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public void setDefault() { |
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this.sourceEndpoint = ""; |
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this.sourceGraph = ""; |
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this.sourceRestriction = ""; |
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this.targetEndpoint = ""; |
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this.targetGraph = ""; |
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this.targetRestriction = ""; |
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269
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270
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this.prefixes = new DataTable<String>(Field.PREFIXES_TABLE.name(), Field.PREFIXES_TABLE_PREFIX.name(), |
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Field.PREFIXES_TABLE_NAMESPACE.name()); |
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273
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this.linkageType = "owl:sameAs"; |
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274
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this.aggregationType = ""; |
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275
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this.metrics = new DataTable<String>(Field.METRICS_TABLE.name(), Field.METRICS_TABLE_SOURCE.name(), |
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276
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|
|
Field.METRICS_TABLE_TARGET.name(), Field.METRICS_TABLE_METRIC.name()); |
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277
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|
|
|
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278
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this.outputFolder = ""; |
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279
|
|
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this.outputFilename = "ntriples.nt"; |
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280
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|
this.configFile = ""; |
|
281
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|
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this.outputGraph = ""; |
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282
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this.sparqlOutput = false; |
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283
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|
this.outputEndpoint = ""; |
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284
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|
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} |
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285
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|
|
|
|
286
|
|
|
@Override |
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287
|
|
|
public void getFields(RowMetaInterface inputRowMeta, String name, RowMetaInterface[] info, StepMeta nextStep, |
|
288
|
|
|
VariableSpace space) throws KettleStepException { |
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289
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ValueMetaInterface field = null; |
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290
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|
|
|
|
291
|
|
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field = new ValueMetaString("subject"); |
|
292
|
|
|
field.setOrigin(name); |
|
293
|
|
|
inputRowMeta.addValueMeta(field); |
|
294
|
|
|
|
|
295
|
|
|
field = new ValueMetaString("predicate"); |
|
296
|
|
|
field.setOrigin(name); |
|
297
|
|
|
inputRowMeta.addValueMeta(field); |
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298
|
|
|
|
|
299
|
|
|
field = new ValueMetaString("object"); |
|
300
|
|
|
field.setOrigin(name); |
|
301
|
|
|
inputRowMeta.addValueMeta(field); |
|
302
|
|
|
} |
|
303
|
|
|
|
|
304
|
|
|
public String getConfigFile() { |
|
305
|
|
|
return configFile; |
|
306
|
|
|
} |
|
307
|
|
|
|
|
308
|
|
|
public void setConfigFile(String configFile) { |
|
309
|
|
|
this.configFile = configFile; |
|
310
|
|
|
} |
|
311
|
|
|
|
|
312
|
|
|
public String getSourceEndpoint() { |
|
313
|
|
|
return sourceEndpoint; |
|
314
|
|
|
} |
|
315
|
|
|
|
|
316
|
|
|
public void setSourceEndpoint(String sourceEndpoint) { |
|
317
|
|
|
this.sourceEndpoint = sourceEndpoint; |
|
318
|
|
|
} |
|
319
|
|
|
|
|
320
|
|
|
public String getSourceGraph() { |
|
321
|
|
|
return sourceGraph; |
|
322
|
|
|
} |
|
323
|
|
|
|
|
324
|
|
|
public void setSourceGraph(String sourceGraph) { |
|
325
|
|
|
this.sourceGraph = sourceGraph; |
|
326
|
|
|
} |
|
327
|
|
|
|
|
328
|
|
|
public String getSourceRestriction() { |
|
329
|
|
|
return sourceRestriction; |
|
330
|
|
|
} |
|
331
|
|
|
|
|
332
|
|
|
public void setSourceRestriction(String sourceRestriction) { |
|
333
|
|
|
this.sourceRestriction = sourceRestriction; |
|
334
|
|
|
} |
|
335
|
|
|
|
|
336
|
|
|
public String getTargetEndpoint() { |
|
337
|
|
|
return targetEndpoint; |
|
338
|
|
|
} |
|
339
|
|
|
|
|
340
|
|
|
public void setTargetEndpoint(String targetEndpoint) { |
|
341
|
|
|
this.targetEndpoint = targetEndpoint; |
|
342
|
|
|
} |
|
343
|
|
|
|
|
344
|
|
|
public String getTargetGraph() { |
|
345
|
|
|
return targetGraph; |
|
346
|
|
|
} |
|
347
|
|
|
|
|
348
|
|
|
public void setTargetGraph(String targetGraph) { |
|
349
|
|
|
this.targetGraph = targetGraph; |
|
350
|
|
|
} |
|
351
|
|
|
|
|
352
|
|
|
public String getTargetRestriction() { |
|
353
|
|
|
return targetRestriction; |
|
354
|
|
|
} |
|
355
|
|
|
|
|
356
|
|
|
public void setTargetRestriction(String targetRestriction) { |
|
357
|
|
|
this.targetRestriction = targetRestriction; |
|
358
|
|
|
} |
|
359
|
|
|
|
|
360
|
|
|
public DataTable<String> getPrefixes() { |
|
361
|
|
|
return prefixes; |
|
362
|
|
|
} |
|
363
|
|
|
|
|
364
|
|
|
public void setPrefixes(DataTable<String> prefixes) { |
|
365
|
|
|
this.prefixes = prefixes; |
|
366
|
|
|
} |
|
367
|
|
|
|
|
368
|
|
|
public String getLinkageType() { |
|
369
|
|
|
return linkageType; |
|
370
|
|
|
} |
|
371
|
|
|
|
|
372
|
|
|
public void setLinkageType(String linkageType) { |
|
373
|
|
|
this.linkageType = linkageType; |
|
374
|
|
|
} |
|
375
|
|
|
|
|
376
|
|
|
public String getAggregationType() { |
|
377
|
|
|
return aggregationType; |
|
378
|
|
|
} |
|
379
|
|
|
|
|
380
|
|
|
public void setAggregationType(String aggregationType) { |
|
381
|
|
|
this.aggregationType = aggregationType; |
|
382
|
|
|
} |
|
383
|
|
|
|
|
384
|
|
|
public DataTable<String> getMetrics() { |
|
385
|
|
|
return metrics; |
|
386
|
|
|
} |
|
387
|
|
|
|
|
388
|
|
|
public void setMetrics(DataTable<String> metrics) { |
|
389
|
|
|
this.metrics = metrics; |
|
390
|
|
|
} |
|
391
|
|
|
|
|
392
|
|
|
public String getOutputFolder() { |
|
393
|
|
|
return outputFolder; |
|
394
|
|
|
} |
|
395
|
|
|
|
|
396
|
|
|
public void setOutputFolder(String outputFolder) { |
|
397
|
|
|
Path p = Paths.get(outputFolder); |
|
398
|
|
|
this.setOutputFilename(p.getFileName().toString()); |
|
399
|
|
|
this.outputFolder = p.getParent() != null ? p.getParent().toString() : ""; |
|
400
|
|
|
} |
|
401
|
|
|
|
|
402
|
|
|
public String getOutputFilename() { |
|
403
|
|
|
return outputFilename; |
|
404
|
|
|
} |
|
405
|
|
|
|
|
406
|
|
|
public void setOutputFilename(String outputFilename) { |
|
407
|
|
|
this.outputFilename = outputFilename; |
|
408
|
|
|
} |
|
409
|
|
|
|
|
410
|
|
|
public String getFilePath() { |
|
411
|
|
|
return Paths.get(this.getOutputFolder(), this.getOutputFilename()).toString(); |
|
412
|
|
|
} |
|
413
|
|
|
|
|
414
|
|
|
public boolean isSparqlEndpoint(String location) { |
|
415
|
|
|
if (location != null && !location.isEmpty()) { |
|
416
|
|
|
String s = location.trim().toLowerCase(); |
|
417
|
|
|
return s.startsWith("http://") || s.startsWith("https://") || s.startsWith("www."); |
|
418
|
|
|
} |
|
419
|
|
|
return false; |
|
420
|
|
|
} |
|
421
|
|
|
|
|
422
|
|
|
public String getFileType(String location) { |
|
423
|
|
|
if (location != null && !location.isEmpty()) { |
|
424
|
|
|
String s = location.trim().toLowerCase(); |
|
425
|
|
|
if (s.lastIndexOf(".") != -1 && s.lastIndexOf(".") != 0) |
|
426
|
|
|
return s.substring(s.lastIndexOf(".") + 1); |
|
427
|
|
|
else |
|
428
|
|
|
return ""; |
|
429
|
|
|
} else { |
|
430
|
|
|
return ""; |
|
431
|
|
|
} |
|
432
|
|
|
} |
|
433
|
|
|
|
|
434
|
|
|
public boolean isSparqlOutput() { |
|
435
|
|
|
return sparqlOutput; |
|
436
|
|
|
} |
|
437
|
|
|
|
|
438
|
|
|
public void setSparqlOutput(boolean sparqlOutput) { |
|
439
|
|
|
this.sparqlOutput = sparqlOutput; |
|
440
|
|
|
} |
|
441
|
|
|
|
|
442
|
|
|
public String getOutputGraph() { |
|
443
|
|
|
return outputGraph; |
|
444
|
|
|
} |
|
445
|
|
|
|
|
446
|
|
|
public void setOutputGraph(String outputGraph) { |
|
447
|
|
|
this.outputGraph = outputGraph; |
|
448
|
|
|
} |
|
449
|
|
|
|
|
450
|
|
|
public String getOutputEndpoint() { |
|
451
|
|
|
return outputEndpoint; |
|
452
|
|
|
} |
|
453
|
|
|
|
|
454
|
|
|
public void setOutputEndpoint(String outputEndpoint) { |
|
455
|
|
|
this.outputEndpoint = outputEndpoint; |
|
456
|
|
|
} |
|
457
|
|
|
|
|
458
|
|
|
} |
|
459
|
|
|
|