|
1
|
|
|
import unittest |
|
2
|
|
|
from mock import Mock |
|
3
|
|
|
from datetime import datetime, timedelta |
|
4
|
|
|
from tests.test_basefile import BaseFileTests |
|
5
|
|
|
|
|
6
|
|
|
|
|
7
|
|
|
class FifTests(BaseFileTests): |
|
8
|
|
|
|
|
9
|
|
|
def setUp(self): |
|
10
|
|
|
super(FifTests, self).setUp() |
|
11
|
|
|
self.libs = Mock() |
|
12
|
|
|
self.dependencies.getLibraries.return_value = self.libs |
|
13
|
|
|
self.setupMne() |
|
14
|
|
|
from niprov.fif import FifFile |
|
15
|
|
|
self.constructor = FifFile |
|
16
|
|
|
self.file = FifFile(self.path, dependencies=self.dependencies) |
|
17
|
|
|
|
|
18
|
|
|
def test_Gets_basic_info_from_mne_and_returns_it(self): |
|
19
|
|
|
out = self.file.inspect() |
|
20
|
|
|
self.assertEqual(out['subject'], 'John Doeish') |
|
21
|
|
|
self.assertEqual(out['project'], 'worlddom') |
|
22
|
|
|
self.assertEqual(out['acquired'], self.acquired) |
|
23
|
|
|
|
|
24
|
|
|
def test_Gets_dimensions(self): |
|
25
|
|
|
out = self.file.inspect() |
|
26
|
|
|
self.assertEqual(out['dimensions'], [123, 91]) |
|
27
|
|
|
self.assertEqual(out['sampling-frequency'], 200) |
|
28
|
|
|
self.assertEqual(out['duration'], timedelta(seconds=91/200.)) |
|
29
|
|
|
|
|
30
|
|
|
def test_Attach_method(self): |
|
31
|
|
|
self.file.getProvenance = Mock() |
|
32
|
|
|
self.file.getProvenance.return_value = 'serial prov' |
|
33
|
|
|
self.file.attach('json') |
|
34
|
|
|
self.file.getProvenance.assert_called_with('json') |
|
35
|
|
|
self.assertIn('existing bla bla ', #original string+added space |
|
36
|
|
|
self.img.info['description']) |
|
37
|
|
|
self.assertIn('NIPROV:'+'serial prov', |
|
38
|
|
|
self.img.info['description']) |
|
39
|
|
|
self.libs.mne.io.write_info.assert_called_with(self.file.path, |
|
40
|
|
|
self.img.info) |
|
41
|
|
|
|
|
42
|
|
|
def test_Determines_modality(self): |
|
43
|
|
|
out = self.file.inspect() |
|
44
|
|
|
self.assertEqual(out['modality'], 'MEG') |
|
45
|
|
|
|
|
46
|
|
|
def test_Preserves_modality_if_inherited(self): |
|
47
|
|
|
pass # Doesn't have to preserve |
|
48
|
|
|
|
|
49
|
|
|
def setupMne(self): |
|
50
|
|
|
TS = 1422522595.76096 |
|
51
|
|
|
self.acquired = datetime.fromtimestamp(TS) |
|
52
|
|
|
self.img = Mock() |
|
53
|
|
|
self.img.info = { |
|
54
|
|
|
'meas_date':(TS,), |
|
55
|
|
|
'proj_name':'worlddom', |
|
56
|
|
|
'subject_info':{'first_name':'John','last_name':'Doeish'}, |
|
57
|
|
|
'nchan':123, |
|
58
|
|
|
'sfreq':200, |
|
59
|
|
|
'description':'existing bla bla'} |
|
60
|
|
|
self.img.first_samp = 10 |
|
61
|
|
|
self.img.last_samp = 100 |
|
62
|
|
|
self.libs.mne.io.Raw.return_value = self.img |
|
63
|
|
|
self.libs.mne.io.read_info.return_value = self.img.info |
|
64
|
|
|
self.libs.hasDependency.return_value = True |
|
65
|
|
|
|
|
66
|
|
|
|
|
67
|
|
|
|
|
68
|
|
|
|