HM\BackUpWordPress\Backup

Complexity

Total Complexity

250

Size/Duplication

Total Lines	1652
Duplicated Lines	13.8 %

Coupling/Cohesion

Components	1
Dependencies	3

Importance

Changes	21
Bugs	2	Features	1

50 Methods

Rating	Name	Duplication	Size	Complexity
A	default_excludes()	0	3	1
B	is_shell_exec_available()	0	25	5
A	is_function_disabled()	0	11	2
B	get_home_path()	0	19	5
B	__construct()	0	23	5
A	get_path()	0	3	1
A	get_archive_filepath()	0	3	1
A	get_archive_filename()	0	17	2
A	set_archive_filename()	13	13	4
A	get_database_dump_filepath()	0	3	1
A	get_database_dump_filename()	0	9	2
A	set_database_dump_filename()	13	13	4
A	get_root()	0	9	2
A	set_root()	9	9	4
A	get_existing_archive_filepath()	0	3	1
A	set_existing_archive_filepath()	9	9	3
A	get_archive_method()	0	3	1
A	get_mysqldump_method()	0	3	1
A	get_type()	0	9	2
A	set_type()	0	9	3
B	get_mysqldump_command_path()	0	58	7
A	set_mysqldump_command_path()	0	3	1
B	get_zip_command_path()	0	42	6
A	set_zip_command_path()	0	3	1
A	do_action()	0	20	4
A	set_action_callback()	0	3	1
A	backup()	0	15	2
B	dump_database()	0	15	5
F	mysqldump()	24	95	13
D	archive()	0	45	10
C	zip()	0	55	11
B	verify_mysqldump()	0	27	6
B	verify_archive()	0	22	5
B	get_files()	0	25	5
D	get_included_files()	34	34	9
D	get_excluded_files()	32	32	9
C	get_unreadable_files()	0	24	7
A	set_excludes()	0	13	3
A	is_safe_mode_active()	0	11	3
F	mysqldump_fallback()	24	93	14
C	zip_archive()	0	70	20
A	get_excludes()	0	16	3
F	exclude_string()	6	82	20
A	get_errors()	9	9	3
A	error()	11	11	3
B	errors_to_warnings()	0	21	6
A	get_warnings()	9	9	3
A	warning()	11	11	3
B	error_handler()	0	16	6
C	user_can_connect()	24	79	11

<?php

namespace HM\BackUpWordPress;
use Symfony\Component\Finder\Finder;
use Ifsnop\Mysqldump as IMysqldump;

/**
 * Generic file and database backup class
 *
 * @version 2.3
 */
class Backup {

	/**
	 * The backup type, must be either complete, file or database
	 *
	 * @string
	 */
	private $type = '';

	/**
	 * The filename of the backup file
	 *
	 * @string
	 */
	private $archive_filename = '';

	/**
	 * The filename of the database dump
	 *
	 * @string
	 */
	private $database_dump_filename = '';

	/**
	 * The path to the zip command
	 *
	 * @string
	 */
	private $zip_command_path;

	/**
	 * The path to the mysqldump command
	 *
	 * @string
	 */
	private $mysqldump_command_path;

	/**
	 * The filename of the existing backup file
	 *
	 * @string
	 */
	private $existing_archive_filepath = '';

	/**
	 * An array of exclude rules
	 *
	 * @array
	 */
	private $excludes = array();

	/**
	 * The path that should be backed up
	 *
	 * @var string
	 */
	private $root = '';

	/**
	 * An array of all the files in root
	 * excluding excludes and unreadable files
	 *
	 * @var array
	 */
	private $files = array();

	/**
	 * An array of all the files in root
	 * that are unreadable
	 *
	 * @var array
	 */
	private $unreadable_files = array();

	/**
	 * An array of all the files in root
	 * that will be included in the backup
	 *
	 * @var array
	 */
	protected $included_files = array();

	/**
	 * An array of all the files in root
	 * that match the exclude rules
	 *
	 * @var array
	 */
	private $excluded_files = array();

	/**
	 * Contains an array of errors
	 *
	 * @var mixed
	 */
	private $errors = array();

	/**
	 * Contains an array of warnings
	 *
	 * @var mixed
	 */
	private $warnings = array();

	/**
	 * The archive method used
	 *
	 * @var string
	 */
	private $archive_method = '';

	/**
	 * The mysqldump method used
	 *
	 * @var string
	 */
	private $mysqldump_method = '';

	/**
	 * @var bool
	 */
	protected $mysqldump_verified = false;

	/**
	 * @var bool
	 */
	protected $archive_verified = false;

	/**
	 * @var string
	 */
	protected $action_callback = '';

	/**
	 * List of patterns we want to exclude by default.
	 * @var array
	 */
	protected $default_excludes = array(
		'.git/',
		'.svn/',
		'.DS_Store',
		'.idea/',
		'backwpup-*',
		'updraft',
		'wp-snapshots',
		'backupbuddy_backups',
		'pb_backupbuddy',
		'backup-db',
		'Envato-backups',
		'managewp',
		'backupwordpress-*-backups',
	);

	/**
	 * Returns a filterable array of excluded directories and files.
	 *
	 * @return mixed|void
	 */
	public function default_excludes() {
		return apply_filters( 'hmbkp_default_excludes', $this->default_excludes );
	}

	/**
	 * Check whether safe mode is active or not
	 *
	 * @param string $ini_get_callback
	 *
	 * @return bool
	 */
	public static function is_safe_mode_active( $ini_get_callback = 'ini_get' ) {

		$safe_mode = @call_user_func( $ini_get_callback, 'safe_mode' );

		if ( $safe_mode && strtolower( $safe_mode ) != 'off' ) {

This if statement, and the following return statement can be replaced with return $safe_mode && strtolower($safe_mode) != 'off';.

			return true;
		}

		return false;

	}

	/**
	 * Check whether shell_exec has been disabled.
	 *
	 * @return bool
	 */
	public static function is_shell_exec_available() {

		// Are we in Safe Mode
		if ( self::is_safe_mode_active() ) {
			return false;
		}

		// Is shell_exec or escapeshellcmd or escapeshellarg disabled?
		if ( self::is_function_disabled( 'suhosin.executor.func.blacklist' ) ) {
			return false;
		}

		// Functions can also be disabled via suhosin
		if ( self::is_function_disabled( 'disable_functions' ) ) {
			return false;
		}

		// Can we issue a simple echo command?
		if ( ! @shell_exec( 'echo backupwordpress' ) ) {

This if statement, and the following return statement can be replaced with return (bool) @shell_exec('echo backupwordpress');.

			return false;
		}

		return true;

	}

	protected static function is_function_disabled( $ini_setting ) {

		if ( array_intersect( array(
			'shell_exec',
			'escapeshellarg',
			'escapeshellcmd'
		), array_map( 'trim', explode( ',', @ini_get( $ini_setting ) ) ) ) ) {
			return false;
		}

	}


	/**
	 * Attempt to work out the root directory of the site, that
	 * is, the path equivelant of home_url().
	 *
	 * @return string $home_path
	 */
	public static function get_home_path() {

		if ( defined( 'HMBKP_ROOT' ) && HMBKP_ROOT ) {
			return wp_normalize_path( HMBKP_ROOT );
		}

		$home_url = home_url();
		$site_url = site_url();

		$home_path = ABSPATH;

		// If site_url contains home_url and they differ then assume WordPress is installed in a sub directory
		if ( $home_url !== $site_url && strpos( $site_url, $home_url ) === 0 ) {
			$home_path = trailingslashit( substr( wp_normalize_path( ABSPATH ), 0, strrpos( wp_normalize_path( ABSPATH ), str_replace( $home_url, '', $site_url ) ) ) );
		}

		return wp_normalize_path( $home_path );

	}

	/**
	 * Sets up the default properties
	 */
	public function __construct() {

		// Raise the memory limit and max_execution time
		@ini_set( 'memory_limit', apply_filters( 'admin_memory_limit', WP_MAX_MEMORY_LIMIT ) );

It seems like you do not handle an error condition here. This can introduce security issues, and is generally not recommended.

		@set_time_limit( 0 );

It seems like you do not handle an error condition here. This can introduce security issues, and is generally not recommended.

		// Set a custom error handler so we can track errors
		set_error_handler( array( $this, 'error_handler' ) );

		// Some properties can be overridden with defines
		if ( defined( 'HMBKP_EXCLUDE' ) && HMBKP_EXCLUDE ) {
			$this->set_excludes( HMBKP_EXCLUDE, true );
		}

		if ( defined( 'HMBKP_MYSQLDUMP_PATH' ) ) {
			$this->set_mysqldump_command_path( HMBKP_MYSQLDUMP_PATH );
		}

		if ( defined( 'HMBKP_ZIP_PATH' ) ) {
			$this->set_zip_command_path( HMBKP_ZIP_PATH );
		}

	}

	/**
	 * Simple class wrapper for Path::get_path()
	 *
	 * @return string
	 */
	private function get_path() {
		return Path::get_instance()->get_path();
	}

	/**
	 * Get the full filepath to the archive file
	 *
	 * @return string
	 */
	public function get_archive_filepath() {
		return trailingslashit( $this->get_path() ) . $this->get_archive_filename();
	}

	/**
	 * Get the filename of the archive file
	 *
	 * @return string
	 */
	public function get_archive_filename() {

		if ( empty( $this->archive_filename ) ) {
			$this->set_archive_filename( implode( '-', array(
				sanitize_title( str_ireplace( array(
					'http://',
					'https://',
					'www'
				), '', home_url() ) ),
				'backup',
				current_time( 'Y-m-d-H-i-s' )
			) ) . '.zip' );
		}

		return $this->archive_filename;

	}

	/**
	 * Set the filename of the archive file
	 *
	 * @param string $filename
	 *
	 * @return \WP_Error|null
	 */
	public function set_archive_filename( $filename ) {

This method seems to be duplicated in your project.

		if ( empty( $filename ) || ! is_string( $filename ) ) {
			return new \WP_Error( 'invalid_file_name', __( 'archive filename must be a non-empty string', 'backupwordpress' ) );
		}

		if ( pathinfo( $filename, PATHINFO_EXTENSION ) !== 'zip' ) {
			return new \WP_Error( 'invalid_file_extension', sprintf( __( 'invalid file extension for archive filename <code>%s</code>', 'backupwordpress' ), $filename ) );
		}

		$this->archive_filename = strtolower( sanitize_file_name( remove_accents( $filename ) ) );

	}

	/**
	 * Get the full filepath to the database dump file.
	 *
	 * @return string
	 */
	public function get_database_dump_filepath() {
		return trailingslashit( $this->get_path() ) . $this->get_database_dump_filename();
	}

	/**
	 * Get the filename of the database dump file
	 *
	 * @return string
	 */
	public function get_database_dump_filename() {

		if ( empty( $this->database_dump_filename ) ) {
			$this->set_database_dump_filename( 'database_' . DB_NAME . '.sql' );
		}

		return $this->database_dump_filename;

	}

	/**
	 * Set the filename of the database dump file
	 *
	 * @param string $filename
	 *
	 * @return \WP_Error|null
	 */
	public function set_database_dump_filename( $filename ) {

This method seems to be duplicated in your project.

		if ( empty( $filename ) || ! is_string( $filename ) ) {
			return new \WP_Error( 'invalid_file_name', __( 'database dump filename must be a non-empty string', 'backupwordpress' ) );
		}

		if ( pathinfo( $filename, PATHINFO_EXTENSION ) !== 'sql' ) {
			return new \WP_Error( 'invalid_file_extension', sprintf( __( 'invalid file extension for database dump filename <code>%s</code>', 'backupwordpress' ), $filename ) );
		}

		$this->database_dump_filename = strtolower( sanitize_file_name( remove_accents( $filename ) ) );

	}

	/**
	 * Get the root directory to backup from
	 *
	 * Defaults to the root of the path equivalent of your home_url
	 *
	 * @return string
	 */
	public function get_root() {

		if ( empty( $this->root ) ) {
			$this->set_root( wp_normalize_path( self::get_home_path() ) );
		}

		return $this->root;

	}

	/**
	 * Set the root directory to backup from
	 *
	 * @param string $path
	 *
	 * @return \WP_Error|null
	 */
	public function set_root( $path ) {

This method seems to be duplicated in your project.

		if ( empty( $path ) || ! is_string( $path ) || ! is_dir( $path ) ) {
			return new \WP_Error( 'invalid_directory_path', sprintf( __( 'Invalid root path <code>%s</code> must be a valid directory path', 'backupwordpress' ), $path ) );
		}

		$this->root = wp_normalize_path( $path );

	}

	/**
	 * Get the filepath for the existing archive
	 *
	 * @return string
	 */
	public function get_existing_archive_filepath() {
		return $this->existing_archive_filepath;
	}

	/**
	 * Set the filepath for the existing archive
	 *
	 * @param string $existing_archive_filepath
	 *
	 * @return null

Should the return type not be \WP_Error|null?

	 */
	public function set_existing_archive_filepath( $existing_archive_filepath ) {

This method seems to be duplicated in your project.

		if ( empty( $existing_archive_filepath ) || ! is_string( $existing_archive_filepath ) ) {
			return new \WP_Error( 'invalid_existing_archive_filepath', sprintf( __( 'Invalid existing archive filepath <code>%s</code> must be a non-empty (string)', 'backupwordpress' ), $existing_archive_filepath ) );
		}

		$this->existing_archive_filepath = wp_normalize_path( $existing_archive_filepath );

	}

	/**
	 * Get the archive method that was used for the backup
	 *
	 * Will be either zip, ZipArchive or PclZip
	 *
	 */
	public function get_archive_method() {
		return $this->archive_method;
	}

	/**
	 * Get the database dump method that was used for the backup
	 *
	 * Will be either mysqldump or mysqldump_fallback
	 *
	 */
	public function get_mysqldump_method() {
		return $this->mysqldump_method;
	}

	/**
	 * Get the backup type
	 *
	 * Defaults to complete
	 *
	 */
	public function get_type() {

		if ( empty( $this->type ) ) {
			$this->set_type( 'complete' );
		}

		return $this->type;

	}

	/**
	 * Set the backup type
	 *
	 * $type must be one of complete, database or file
	 *
	 * @param string $type
	 *
	 * @return \WP_Error|null
	 */
	public function set_type( $type ) {

		if ( ! is_string( $type ) || ! in_array( $type, array( 'file', 'database', 'complete' ) ) ) {
			return new \WP_Error( 'invalid_backup_type', sprintf( __( 'Invalid backup type <code>%s</code> must be one of (string) file, database or complete', 'backupwordpress' ), $type ) );
		}

		$this->type = $type;

	}

	/**
	 * Get the path to the mysqldump bin
	 *
	 * If not explicitly set will attempt to work
	 * it out by checking common locations
	 *
	 * @return string
	 */
	public function get_mysqldump_command_path() {

		// Check shell_exec is available
		if ( ! self::is_shell_exec_available() ) {
			return '';
		}

		// Return now if it's already been set
		if ( isset( $this->mysqldump_command_path ) ) {
			return $this->mysqldump_command_path;
		}

		$this->mysqldump_command_path = '';

		// Does mysqldump work
		if ( is_null( shell_exec( 'hash mysqldump 2>&1' ) ) ) {

			// If so store it for later
			$this->set_mysqldump_command_path( 'mysqldump' );

			// And return now
			return $this->mysqldump_command_path;

		}

		// List of possible mysqldump locations
		$mysqldump_locations = array(
			'/usr/local/bin/mysqldump',
			'/usr/local/mysql/bin/mysqldump',
			'/usr/mysql/bin/mysqldump',
			'/usr/bin/mysqldump',
			'/opt/local/lib/mysql6/bin/mysqldump',
			'/opt/local/lib/mysql5/bin/mysqldump',
			'/opt/local/lib/mysql4/bin/mysqldump',
			'/xampp/mysql/bin/mysqldump',
			'/Program Files/xampp/mysql/bin/mysqldump',
			'/Program Files/MySQL/MySQL Server 6.0/bin/mysqldump',
			'/Program Files/MySQL/MySQL Server 5.7/bin/mysqldump',
			'/Program Files/MySQL/MySQL Server 5.6/bin/mysqldump',
			'/Program Files/MySQL/MySQL Server 5.5/bin/mysqldump',
			'/Program Files/MySQL/MySQL Server 5.4/bin/mysqldump',
			'/Program Files/MySQL/MySQL Server 5.1/bin/mysqldump',
			'/Program Files/MySQL/MySQL Server 5.0/bin/mysqldump',
			'/Program Files/MySQL/MySQL Server 4.1/bin/mysqldump',
			'/opt/local/bin/mysqldump'
		);

		// Find the first one which works
		foreach ( $mysqldump_locations as $location ) {
			if ( (is_null( shell_exec( 'hash ' . wp_normalize_path( $location ) . ' 2>&1' ) ) ) && @is_executable( wp_normalize_path( $location ) ) ) {
				$this->set_mysqldump_command_path( $location );
				break;  // Found one
			}
		}

		return $this->mysqldump_command_path;

	}

	/**
	 * Set the path to the mysqldump bin
	 *
	 * Setting the path to false will cause the database
	 * dump to use the php fallback
	 *
	 * @param mixed $path
	 */
	public function set_mysqldump_command_path( $path ) {
		$this->mysqldump_command_path = $path;
	}

	/**
	 * Get the path to the zip bin
	 *
	 * If not explicitly set will attempt to work
	 * it out by checking common locations
	 *
	 * @return string
	 */
	public function get_zip_command_path() {

		// Check shell_exec is available
		if ( ! self::is_shell_exec_available() ) {
			return '';
		}

		// Return now if it's already been set
		if ( isset( $this->zip_command_path ) ) {
			return $this->zip_command_path;
		}

		$this->zip_command_path = '';

		// Does zip work
		if ( is_null( shell_exec( 'hash zip 2>&1' ) ) ) {

			// If so store it for later
			$this->set_zip_command_path( 'zip' );

			// And return now
			return $this->zip_command_path;

		}

		// List of possible zip locations
		$zip_locations = array(
			'/usr/bin/zip',
			'/opt/local/bin/zip'
		);

		// Find the first one which works
		foreach ( $zip_locations as $location ) {
			if ( @is_executable( wp_normalize_path( $location ) ) ) {
				$this->set_zip_command_path( $location );
				break;  // Found one
			}
		}

		return $this->zip_command_path;

	}

	/**
	 * Set the path to the zip bin
	 *
	 * Setting the path to false will cause the database
	 * dump to use the php fallback
	 *
	 * @param mixed $path
	 */
	public function set_zip_command_path( $path ) {
		$this->zip_command_path = $path;
	}

	/**
	 * Fire actions for the various backup stages
	 *
	 * Callers can register callbacks to be called using `set_action_callback`
	 * Both the action and the instance on Backup are then passed to the callback function
	 *
	 * @see set_action_callback
	 *
	 * @param string $action The event to fire
	 */
	protected function do_action( $action ) {

		// If we have any callbacks then let's fire them
		if ( ! empty( $this->action_callback ) ) {

			// Order them by priority, lowest priority first
			ksort( $this->action_callback );

			foreach ( $this->action_callback as $priority ) {
				foreach ( $priority as $callback ) {
					call_user_func( $callback, $action, $this );
				}
			}

		}

		// Also fire a global WordPress action
		do_action( $action, $this );

	}

	/**
	 * Allow the caller to set a callback function that will be invoked whenever
	 * an action fires
	 *
	 * @see do_action
	 * @see /do_action
	 *
	 * @param callable $callback The function or method to be called
	 * @param int $priority The priority of the callback
	 */
	public function set_action_callback( $callback, $priority = 10 ) {
		$this->action_callback[ $priority ][] = $callback;
	}

	/**
	 * Kick off a backup
	 *
	 * @todo should be renamed so it's not same as class
	 * @return null
	 */
	public function backup() {

		$this->do_action( 'hmbkp_backup_started' );

		// Backup database
		if ( $this->get_type() !== 'file' ) {
			$this->dump_database();
		}

		// Zip everything up
		$this->archive();

		$this->do_action( 'hmbkp_backup_complete' );

	}

	/**
	 * Create the mysql backup
	 *
	 * Uses mysqldump if available, falls back to PHP
	 * if not.
	 *
	 */
	public function dump_database() {

		// Attempt to use native mysqldump
		if ( self::is_shell_exec_available() && $this->get_mysqldump_command_path() && ! is_wp_error( $this->user_can_connect() ) ) {
			$this->mysqldump();
		}

		// If we cannot run mysqldump via CLI, fallback to PHP
		if ( empty( $this->mysqldump_verified ) ) {
			$this->mysqldump_fallback();
		}

		$this->do_action( 'hmbkp_mysqldump_finished' );

	}

	/**
	 * Export the database to an .sql file via the command line with mysqldump
	 */
	public function mysqldump() {

		$this->mysqldump_method = 'mysqldump';

		$this->do_action( 'hmbkp_mysqldump_started' );

		// Guess port or socket connection type
		$port_or_socket = strstr( DB_HOST, ':' );

		$host = DB_HOST;

		if ( ! empty( $port_or_socket ) ) {

This code seems to be duplicated across your project.

			$host = substr( DB_HOST, 0, strpos( DB_HOST, ':' ) );

			$port_or_socket = substr( $port_or_socket, 1 );

			if ( 0 !== strpos( $port_or_socket, '/' ) ) {

				$port = intval( $port_or_socket );

				$maybe_socket = strstr( $port_or_socket, ':' );

				if ( ! empty( $maybe_socket ) ) {

					$socket = substr( $maybe_socket, 1 );

				}

			} else {

				$socket = $port_or_socket;

			}
		}

		// Path to the mysqldump executable
		$cmd = escapeshellarg( $this->get_mysqldump_command_path() );

		// We don't want to create a new DB
		$cmd .= ' --no-create-db';

		// Allow lock-tables to be overridden
		if ( ! defined( 'HMBKP_MYSQLDUMP_SINGLE_TRANSACTION' ) || false !== HMBKP_MYSQLDUMP_SINGLE_TRANSACTION  ) {
			$cmd .= ' --single-transaction';
		}

		// Make sure binary data is exported properly
		$cmd .= ' --hex-blob';

		// Username
		$cmd .= ' -u ' . escapeshellarg( DB_USER );

		// Don't pass the password if it's blank
		if ( DB_PASSWORD ) {
			$cmd .= ' -p' . escapeshellarg( DB_PASSWORD );
		}

		// Set the host
		$cmd .= ' -h ' . escapeshellarg( $host );

		// Set the port if it was set
		if ( ! empty( $port ) && is_numeric( $port ) ) {
			$cmd .= ' -P ' . $port;
		}

		// Set the socket path
		if ( ! empty( $socket ) && ! is_numeric( $socket ) ) {
			$cmd .= ' --protocol=socket -S ' . $socket;
		}

		// The file we're saving too
		$cmd .= ' -r ' . escapeshellarg( $this->get_database_dump_filepath() );

		// The database we're dumping
		$cmd .= ' ' . escapeshellarg( DB_NAME );

		// Pipe STDERR to STDOUT
		$cmd .= ' 2>&1';

		// Store any returned data in an error
		$stderr = shell_exec( $cmd );

		// Skip the new password warning that is output in mysql > 5.6 (@see http://bugs.mysql.com/bug.php?id=66546)
		if ( 'Warning: Using a password on the command line interface can be insecure.' === trim( $stderr ) ) {
			$stderr = '';
		}

		if ( $stderr ) {
			$this->error( $this->get_mysqldump_method(), $stderr );
		}

		$this->verify_mysqldump();

	}

	/**
	 * PHP mysqldump fallback functions, exports the database to a .sql file
	 *
	 */
	public function mysqldump_fallback() {

		$this->errors_to_warnings( $this->get_mysqldump_method() );

$this->get_mysqldump_method() is of type string, but the function expects a null.

		$this->mysqldump_method = 'mysqldump_fallback';

		$this->do_action( 'hmbkp_mysqldump_started' );

		// Guess port or socket connection type
		$port_or_socket = strstr( DB_HOST, ':' );

		$host = DB_HOST;

$host is not used, you could remove the assignment.

		if ( ! empty( $port_or_socket ) ) {

This code seems to be duplicated across your project.

			$host = substr( DB_HOST, 0, strpos( DB_HOST, ':' ) );

$host is not used, you could remove the assignment.

			$port_or_socket = substr( $port_or_socket, 1 );

			if ( 0 !== strpos( $port_or_socket, '/' ) ) {

				$port = intval( $port_or_socket );

				$maybe_socket = strstr( $port_or_socket, ':' );

				if ( ! empty( $maybe_socket ) ) {

					$socket = substr( $maybe_socket, 1 );

				}

			} else {

				$socket = $port_or_socket;

			}
		}

		// PDO connection string formats:
		// mysql:host=localhost;port=3307;dbname=testdb
		// mysql:unix_socket=/tmp/mysql.sock;dbname=testdb

		if ( $port_or_socket ) {
			if ( isset( $port ) ) {
				$dsn = 'mysql:host=' . DB_HOST . ';port=' . $port . ';dbname=' . DB_NAME;
			} elseif ( isset( $socket ) ) {
				$dsn = 'mysql:unix_socket=' . $socket . ';dbname=' . DB_NAME;
			}
		} else {
			$dsn = 'mysql:host=' . DB_HOST . ';dbname=' . DB_NAME;
		}

		// Get character set from constant if it is declared.
		if ( defined( 'DB_CHARSET' ) && DB_CHARSET ) {
			$charset = DB_CHARSET;
		} else {
			$charset = 'utf8';
		}

		if ( defined( 'DB_PASSWORD' ) && DB_PASSWORD ) {
			$pwd = DB_PASSWORD;
		} else {
			$pwd = '';
		}

		if ( ! defined( 'HMBKP_MYSQLDUMP_SINGLE_TRANSACTION' ) || false !== HMBKP_MYSQLDUMP_SINGLE_TRANSACTION  ) {
			$single_transaction = true;
		} else {
			$single_transaction = false;
		}

		$dump_settings = array(
			'default-character-set' => $charset,
			'hex-blob'              => true,
			'single-transaction'    => $single_transaction,
		);

		try {

			// Allow passing custom options to dump process.
			$dump_settings = apply_filters( 'hmbkp_mysqldump_fallback_dump_settings', $dump_settings );

			$dump = new IMysqldump\Mysqldump( $dsn, DB_USER, $pwd, $dump_settings );

The variable $dsn does not seem to be defined for all execution paths leading up to this point.

			$dump->start( $this->get_database_dump_filepath() );

		} catch ( \Exception $e ) {

			return new \WP_Error( 'mysql-fallback-error', sprintf( __( 'mysqldump fallback error %s', 'backupwordpress' ), $e->getMessage() ) );

		}

	}

	/**
	 * Zip up all the files.
	 *
	 * Attempts to use the shell zip command, if
	 * thats not available then it falls back to
	 * PHP ZipArchive.
	 *
	 */
	public function archive() {

		if ( defined( 'HMBKP_FORCE_ZIP_METHOD' ) ) {
			switch ( HMBKP_FORCE_ZIP_METHOD ) {
				case 'zip':
					if ( $this->get_zip_command_path() ) {
						$this->zip();
					} else {
						$this->warning( $this->get_archive_method(), __( 'Zip command is not available.', 'backupwordpress' ) );
					}
					break;
				case 'ziparchive':
					if ( class_exists( 'ZipArchive' ) ) {
						$this->zip_archive();
					} else {
						$this->warning( $this->get_archive_method(), __( 'ZipArchive method is not available.', 'backupwordpress' ) );
					}
					break;
				default:
					$this->warning( $this->get_archive_method(), __( 'No valid archive method found.', 'backupwordpress' ) );
					break;
			}
		} else {
			// Is zip available
			if ( $this->get_zip_command_path() ) {
				$this->zip();
			} else {
				// If the shell zip failed then use ZipArchive
				if ( empty( $this->archive_verified ) && class_exists( 'ZipArchive' ) ) {
					$this->zip_archive();
				} else {
					$this->warning( $this->get_archive_method(), __( 'No valid archive method found.', 'backupwordpress' ) );
				}
			}

		}

		// Delete the database dump file
		if ( file_exists( $this->get_database_dump_filepath() ) ) {
			unlink( $this->get_database_dump_filepath() );
		}

		$this->do_action( 'hmbkp_archive_finished' );

	}

	/**
	 * Zip using the native zip command
	 */
	public function zip() {

		$this->archive_method = 'zip';

		$this->do_action( 'hmbkp_archive_started' );

		// Add the database dump to the archive
		if ( 'file' !== $this->get_type() && file_exists( $this->get_database_dump_filepath() ) ) {
			$stderr = shell_exec( 'cd ' . escapeshellarg( $this->get_path() ) . ' && ' . escapeshellcmd( $this->get_zip_command_path() ) . ' -q ' . escapeshellarg( $this->get_archive_filepath() ) . ' ' . escapeshellarg( $this->get_database_dump_filename() ) . ' 2>&1' );

			if ( ! empty ( $stderr ) ) {
				$this->warning( $this->get_archive_method(), $stderr );
			}
		}

		// Zip up $this->root
		if ( 'database' !== $this->get_type() ) {

			// cd to the site root
			$command = 'cd ' . escapeshellarg( $this->get_root() );

			// Run the zip command with the recursive and quiet flags
			$command .= ' && ' . escapeshellcmd( $this->get_zip_command_path() ) . ' -rq ';

			if ( defined( 'HMBKP_ENABLE_SYNC' ) && HMBKP_ENABLE_SYNC ) {

				// If the destination zip file already exists then let's just add changed files to save time
				if ( file_exists( $this->get_archive_filepath() ) && $this->get_existing_archive_filepath() ) {
					$command .= ' -FS ';
				}

			}

			// Save the zip file to the correct path
			$command .= escapeshellarg( $this->get_archive_filepath() ) . ' ./';

			// Pass exclude rules in if we have them
			if ( $this->exclude_string( 'zip' ) ) {
				$command .= ' -x ' . $this->exclude_string( 'zip' );
			}

			// Push all output to STDERR
			$command .= ' 2>&1';

			$stderr = shell_exec( $command );

		}

		if ( ! empty( $stderr ) ) {
			$this->warning( $this->get_archive_method(), $stderr );
		}

		$this->verify_archive();

	}

	/**
	 * Fallback for creating zip archives if zip command is
	 * unavailable.
	 */
	public function zip_archive() {

		$this->errors_to_warnings( $this->get_archive_method() );

$this->get_archive_method() is of type string, but the function expects a null.

		$this->archive_method = 'ziparchive';

		$this->do_action( 'hmbkp_archive_started' );

		$zip = new \ZipArchive();

		if ( ! class_exists( 'ZipArchive' ) || ! $zip->open( $this->get_archive_filepath(), \ZIPARCHIVE::CREATE ) ) {
			return;
		}

		$excludes = $this->exclude_string( 'regex' );

		// Add the database
		if ( $this->get_type() !== 'file' && file_exists( $this->get_database_dump_filepath() ) ) {
			$zip->addFile( $this->get_database_dump_filepath(), $this->get_database_dump_filename() );
		}

		if ( $this->get_type() !== 'database' ) {

			$files_added = 0;

			foreach ( $this->get_files() as $file ) {

				// Skip dot files, they should only exist on versions of PHP between 5.2.11 -> 5.3
				if ( method_exists( $file, 'isDot' ) && $file->isDot() ) {
					continue;
				}

				// Skip unreadable files
				if ( ! @realpath( $file->getPathname() ) || ! $file->isReadable() ) {
					continue;
				}

				// Excludes
				if ( $excludes && preg_match( '(' . $excludes . ')', str_ireplace( trailingslashit( $this->get_root() ), '', wp_normalize_path( $file->getPathname() ) ) ) ) {
					continue;
				}

				if ( $file->isDir() ) {
					$zip->addEmptyDir( trailingslashit( str_ireplace( trailingslashit( $this->get_root() ), '', wp_normalize_path( $file->getPathname() ) ) ) );
				} elseif ( $file->isFile() ) {
					$zip->addFile( $file->getPathname(), str_ireplace( trailingslashit( $this->get_root() ), '', wp_normalize_path( $file->getPathname() ) ) );
				}

				if ( ++ $files_added % 500 === 0 ) {
					if ( ! $zip->close() || ! $zip->open( $this->get_archive_filepath(), \ZIPARCHIVE::CREATE ) ) {
						return;
					}
				}

			}

		}

		if ( $zip->status ) {
			$this->warning( $this->get_archive_method(), $zip->status );
		}

		if ( $zip->statusSys ) {
			$this->warning( $this->get_archive_method(), $zip->statusSys );
		}

		$zip->close();

		$this->verify_archive();

	}

	public function verify_mysqldump() {

		$this->do_action( 'hmbkp_mysqldump_verify_started' );

		// If we've already passed then no need to check again
		if ( ! empty( $this->mysqldump_verified ) ) {
			return true;
		}

		// If there are mysqldump errors delete the database dump file as mysqldump will still have written one
		if ( $this->get_errors( $this->get_mysqldump_method() ) && file_exists( $this->get_database_dump_filepath() ) ) {
			unlink( $this->get_database_dump_filepath() );
		}

		// If we have an empty file delete it
		if ( @filesize( $this->get_database_dump_filepath() ) === 0 ) {
			unlink( $this->get_database_dump_filepath() );
		}

		// If the file still exists then it must be good
		if ( file_exists( $this->get_database_dump_filepath() ) ) {
			return $this->mysqldump_verified = true;
		}

		return false;

	}

	/**
	 * Verify that the archive is valid and contains all the files it should contain.
	 *
	 * @return bool
	 */
	public function verify_archive() {

		$this->do_action( 'hmbkp_archive_verify_started' );

		// If we've already passed then no need to check again
		if ( ! empty( $this->archive_verified ) ) {
			return true;
		}

		// If there are errors delete the backup file.
		if ( $this->get_errors( $this->get_archive_method() ) && file_exists( $this->get_archive_filepath() ) ) {
			unlink( $this->get_archive_filepath() );
		}

		// If the archive file still exists assume it's good
		if ( file_exists( $this->get_archive_filepath() ) ) {
			return $this->archive_verified = true;
		}

		return false;

	}

	/**
	 * Return an array of all files in the filesystem.
	 *
	 * @param bool $ignore_default_exclude_rules If true then will return all files under root. Otherwise returns all files except those matching default exclude rules.
	 *
	 * @return array
	 */
	public function get_files( $ignore_default_exclude_rules = false ) {

		if ( ! empty( $this->files ) ) {
			return $this->files;
		}

		$finder = new Finder();
		$finder->followLinks();
		$finder->ignoreDotFiles( false );
		$finder->ignoreUnreadableDirs();

		if ( ! $ignore_default_exclude_rules ) {
			// Skips folders/files that match default exclude patterns
			foreach ( $this->default_excludes() as $exclude ) {
				$finder->notPath( $exclude );
			}
		}

		foreach ( $finder->in( $this->get_root() ) as $entry ) {
			$this->files[] = $entry;
		}

		return $this->files;

	}

	/**
	 * Returns an array of files that will be included in the backup.
	 *
	 * @return array
	 */
	public function get_included_files() {

This method seems to be duplicated in your project.

		if ( ! empty( $this->included_files ) ) {
			return $this->included_files;
		}

		$this->included_files = array();

		$excludes = $this->exclude_string( 'regex' );

		foreach ( $this->get_files( true ) as $file ) {

			// Skip dot files, they should only exist on versions of PHP between 5.2.11 -> 5.3
			if ( method_exists( $file, 'isDot' ) && $file->isDot() ) {
				continue;
			}

			// Skip unreadable files
			if ( ! @realpath( $file->getPathname() ) || ! $file->isReadable() ) {
				continue;
			}

			// Excludes
			if ( $excludes && preg_match( '(' . $excludes . ')', str_ireplace( trailingslashit( $this->get_root() ), '', wp_normalize_path( $file->getPathname() ) ) ) ) {
				continue;
			}

			$this->included_files[] = $file;

		}

		return $this->included_files;

	}

	/**
	 * Returns an array of files that match the exclude rules.
	 *
	 * @return array
	 */
	public function get_excluded_files() {

This method seems to be duplicated in your project.

		if ( ! empty( $this->excluded_files ) ) {
			return $this->excluded_files;
		}

		$this->excluded_files = array();

		$excludes = $this->exclude_string( 'regex' );

		foreach ( $this->get_files( true ) as $file ) {

			// Skip dot files, they should only exist on versions of PHP between 5.2.11 -> 5.3
			if ( method_exists( $file, 'isDot' ) && $file->isDot() ) {
				continue;
			}

			// Skip unreadable files
			if ( ! @realpath( $file->getPathname() ) || ! $file->isReadable() ) {
				continue;
			}

			// Excludes
			if ( $excludes && preg_match( '(' . $excludes . ')', str_ireplace( trailingslashit( $this->get_root() ), '', wp_normalize_path( $file->getPathname() ) ) ) ) {
				$this->excluded_files[] = $file;
			}

		}

		return $this->excluded_files;

	}

	/**
	 * Returns an array of unreadable files.
	 *
	 * @return array
	 */
	public function get_unreadable_files() {

		if ( ! empty( $this->unreadable_files ) ) {
			return $this->unreadable_files;
		}

		$this->unreadable_files = array();

		foreach ( $this->get_files( true ) as $file ) {

			// Skip dot files, they should only exist on versions of PHP between 5.2.11 -> 5.3
			if ( method_exists( $file, 'isDot' ) && $file->isDot() ) {
				continue;
			}

			if ( ! @realpath( $file->getPathname() ) || ! $file->isReadable() ) {
				$this->unreadable_files[] = $file;
			}

		}

		return $this->unreadable_files;

	}

	/**
	 * Get an array of exclude rules
	 *
	 * The backup path is automatically excluded
	 *
	 * @return array
	 */
	public function get_excludes() {

		$excludes = array();

		if ( isset( $this->excludes ) ) {
			$excludes = $this->excludes;
		}

		// If path() is inside root(), exclude it
		if ( strpos( $this->get_path(), $this->get_root() ) !== false ) {
			array_unshift( $excludes, trailingslashit( $this->get_path() ) );
		}

		return array_unique( $excludes );

	}

	/**
	 * Set the excludes, expects and array
	 *
	 * @param  Array $excludes
	 * @param Bool $append
	 */
	public function set_excludes( $excludes, $append = false ) {

		if ( is_string( $excludes ) ) {
			$excludes = explode( ',', $excludes );
		}

		if ( $append ) {
			$excludes = array_merge( $this->excludes, $excludes );
		}

		$this->excludes = array_filter( array_unique( array_map( 'trim', $excludes ) ) );

	}

	/**
	 * Generate the exclude param string for the zip backup
	 *
	 * Takes the exclude rules and formats them for use with either
	 * the shell zip command or pclzip
	 *
	 * @param string $context . (default: 'zip')
	 *
	 * @return string
	 */
	public function exclude_string( $context = 'zip' ) {

		// Return a comma separated list by default
		$separator = ', ';
		$wildcard  = '';

		// The zip command
		if ( $context === 'zip' ) {
			$wildcard  = '*';
			$separator = ' -x ';

			// The PclZip fallback library
		} elseif ( $context === 'regex' ) {
			$wildcard  = '([\s\S]*?)';
			$separator = '|';
		}

		$excludes = $this->get_excludes();

		foreach ( $excludes as $key => &$rule ) {

			$file = $absolute = $fragment = false;

			// Files don't end with /
			if ( ! in_array( substr( $rule, - 1 ), array( '\\', '/' ) ) ) {
				$file = true;
			} // If rule starts with a / then treat as absolute path
			elseif ( in_array( substr( $rule, 0, 1 ), array( '\\', '/' ) ) ) {

This code seems to be duplicated across your project.

				$absolute = true;
			} // Otherwise treat as dir fragment
			else {
				$fragment = true;
			}

			// Strip $this->root and conform
			$rule = str_ireplace( $this->get_root(), '', untrailingslashit( wp_normalize_path( $rule ) ) );

			// Strip the preceeding slash
			if ( in_array( substr( $rule, 0, 1 ), array( '\\', '/' ) ) ) {

This code seems to be duplicated across your project.

				$rule = substr( $rule, 1 );
			}

			// Escape string for regex
			if ( $context === 'regex' ) {
				$rule = str_replace( '.', '\.', $rule );
			}

			// Convert any existing wildcards
			if ( $wildcard !== '*' && false !== strpos( $rule, '*' ) ) {
				$rule = str_replace( '*', $wildcard, $rule );
			}

			// Wrap directory fragments and files in wildcards for zip
			if ( 'zip' === $context && ( $fragment || $file ) ) {
				$rule = $wildcard . $rule . $wildcard;
			}

			// Add a wildcard to the end of absolute url for zips
			if ( 'zip' === $context && $absolute ) {
				$rule .= $wildcard;
			}

			// Add and end carrot to files for pclzip but only if it doesn't end in a wildcard
			if ( $file && 'regex' === $context ) {
				$rule .= '$';
			}

			// Add a start carrot to absolute urls for pclzip
			if ( $absolute && 'regex' === $context ) {
				$rule = '^' . $rule;
			}

		}

		// Escape shell args for zip command
		if ( $context === 'zip' ) {
			$excludes = array_map( 'escapeshellarg', array_unique( $excludes ) );
		}

		return implode( $separator, $excludes );

	}

	/**
	 * Get the errors
	 *
	 */
	public function get_errors( $context = null ) {

This method seems to be duplicated in your project.

		if ( ! empty( $context ) ) {
			return isset( $this->errors[ $context ] ) ? $this->errors[ $context ] : array();
		}

		return $this->errors;

	}

	/**
	 * Add an error to the errors stack
	 *
	 * @param string $context
	 * @param mixed $error
	 */
	public function error( $context, $error ) {

This method seems to be duplicated in your project.

		if ( empty( $context ) || empty( $error ) ) {
			return;
		}

		$this->do_action( 'hmbkp_error' );

		$this->errors[ $context ][ $_key = md5( implode( ':', (array) $error ) ) ] = $error;

	}

	/**
	 * Migrate errors to warnings
	 *
	 * @param null $context
	 */
	private function errors_to_warnings( $context = null ) {

		$errors = empty( $context ) ? $this->get_errors() : array( $context => $this->get_errors( $context ) );

		if ( empty( $errors ) ) {
			return;
		}

		foreach ( $errors as $error_context => $context_errors ) {
			foreach ( $context_errors as $error ) {
				$this->warning( $error_context, $error );
			}
		}

		if ( $context ) {
			unset( $this->errors[ $context ] );
		} else {
			$this->errors = array();
		}

	}

	/**
	 * Get the warnings
	 *
	 */
	public function get_warnings( $context = null ) {

This method seems to be duplicated in your project.

		if ( ! empty( $context ) ) {
			return isset( $this->warnings[ $context ] ) ? $this->warnings[ $context ] : array();
		}

		return $this->warnings;

	}

	/**
	 * Add an warning to the warnings stack
	 *
	 * @param string $context
	 * @param mixed $warning
	 */
	private function warning( $context, $warning ) {

This method seems to be duplicated in your project.

		if ( empty( $context ) || empty( $warning ) ) {
			return;
		}

		$this->do_action( 'hmbkp_warning' );

		$this->warnings[ $context ][ $_key = md5( implode( ':', (array) $warning ) ) ] = $warning;

	}

	/**
	 * Custom error handler for catching php errors
	 *
	 * @param $type
	 *
	 * @return bool
	 */
	public function error_handler( $type ) {

		// Skip strict & deprecated warnings
		if ( ( defined( 'E_DEPRECATED' ) && $type === E_DEPRECATED ) || ( defined( 'E_STRICT' ) && $type === E_STRICT ) || error_reporting() === 0 ) {
			return false;
		}

		$args = func_get_args();

		array_shift( $args );

		$this->warning( 'php', implode( ', ', array_splice( $args, 0, 3 ) ) );

		return false;

	}

	/**
	 * Determine if user can connect via the CLI
	 *
	 * @return \WP_Error

Should the return type not be \WP_Error|null?

	 */
	public function user_can_connect() {

		// mysql --host=localhost --user=myname --password=mypass mydb

		// Guess port or socket connection type
		$port_or_socket = strstr( DB_HOST, ':' );

		$host = DB_HOST;

		if ( ! empty( $port_or_socket ) ) {

This code seems to be duplicated across your project.

			$host = substr( DB_HOST, 0, strpos( DB_HOST, ':' ) );

			$port_or_socket = substr( $port_or_socket, 1 );

			if ( 0 !== strpos( $port_or_socket, '/' ) ) {

				$port = intval( $port_or_socket );

				$maybe_socket = strstr( $port_or_socket, ':' );

				if ( ! empty( $maybe_socket ) ) {

					$socket = substr( $maybe_socket, 1 );

				}

			} else {

				$socket = $port_or_socket;

			}
		}

		// Path to the mysqldump executable
		$cmd = 'mysql ';

		// Username
		$cmd .= ' -u ' . escapeshellarg( DB_USER );

		// Don't pass the password if it's blank
		if ( DB_PASSWORD ) {
			$cmd .= ' -p' . escapeshellarg( DB_PASSWORD );
		}

		// Set the host
		$cmd .= ' -h ' . escapeshellarg( $host );

		// Set the port if it was set
		if ( ! empty( $port ) && is_numeric( $port ) ) {
			$cmd .= ' -P ' . $port;
		}

		// Set the socket path
		if ( ! empty( $socket ) && ! is_numeric( $socket ) ) {
			$cmd .= ' --protocol=socket -S ' . $socket;
		}

		// The database we're dumping
		$cmd .= ' ' . escapeshellarg( DB_NAME );

		// Quit immediately
		$cmd .= ' --execute="quit"';

		// Pipe STDERR to STDOUT
		$cmd .= ' 2>&1';

		// Store any returned data in an error
		$stderr = shell_exec( $cmd );

		// Skip the new password warning that is output in mysql > 5.6 (@see http://bugs.mysql.com/bug.php?id=66546)
		if ( 'Warning: Using a password on the command line interface can be insecure.' === trim( $stderr ) ) {
			$stderr = '';
		}

		if ( $stderr ) {
			return new \WP_Error( 'mysql-cli-connect-error', __( 'Could not connect to mysql', 'backupwordpress' ) );
		}
	}

}