hawc_hal.healpix_handling.sparse_healpix.DenseHealpix.as_partial() - Code Metrics - Inspection of "Model residual maps" - giacomov/hawc_hal - Measure and Improve Code Quality continuously with Scrutinizer

Passed

Pull Request — master (#17)

unknown

created 2018-12-04 16:27 UTC

DenseHealpix.as_partial() A

↳ Parent: hawc_hal.healpix_handling.sparse_healpix

Complexity

Conditions

Size

Total Lines	3
Code Lines	2

Duplication

Lines	0
Ratio	0 %

Importance

Changes

Metric	Value
eloc	2
dl	0
loc	3
rs	10
c	0
b	0
f	0
cc	1
nop	1

import numpy as np
class SomeClass:
    def some_method(self):
        """Do x and return foo."""
import healpy as hp
import pandas as pd
from ..special_values import UNSEEN


def _not_implemented():  # pragma: no cover

    raise RuntimeError("You cannot use the base class. Use the derived classes.")


class HealpixWrapperBase(object):
    """
    A class which wrap a numpy array containing an healpix map, in order to expose always the same interface
    independently of whether the underlying map is sparse or dense
    """

    def __init__(self, sparse, nside):

        self._nside = int(nside)
        self._npix = hp.nside2npix(self._nside)
        self._pixel_area = hp.nside2pixarea(self._nside, degrees=True)

        self._sparse = bool(sparse)

    @property
    def is_sparse(self):
class SomeClass:
    def some_method(self):
        """Do x and return foo."""
        return self._sparse

    @property
    def nside(self):
class SomeClass:
    def some_method(self):
        """Do x and return foo."""
        return self._nside

    @property
    def npix(self):
        """
        :return: total number of pixels for this nside. Note that mymap.npix is equivalent to
        healpy.nside2npix(mymap.nside)
        """
        return self._npix

    @property
    def pixel_area(self):
        """
        :return: area (solid angle) of the healpix pixel in sq. degrees
        """
        return self._pixel_area

    def as_dense(self):  # pragma: no cover
class SomeClass:
    def some_method(self):
        """Do x and return foo."""

        return _not_implemented()

    def as_partial(self):  # pragma: no cover
class SomeClass:
    def some_method(self):
        """Do x and return foo."""

        return _not_implemented()

    def to_pandas(self):
        """
        Returns a pandas Series with the dense representation of the data

        :return: pd.Series, type
        """

        return pd.Series(self.as_partial())


class SparseHealpix(HealpixWrapperBase):
class SomeClass:
    def some_method(self):
        """Do x and return foo."""

    def __init__(self, partial_map, pixels_ids, nside, fill_value=UNSEEN):

        self._partial_map = partial_map
        self._pixels_ids = pixels_ids
        self._fill_value = fill_value

        super(SparseHealpix, self).__init__(sparse=True, nside=nside)

    def __add__(self, other_map):
        

        # Make sure they have the same pixels
        assert np.array_equal(self._pixels_ids, other_map._pixels_ids)
class MyParent:
    def __init__(self):
        self._x = 1;
        self.y = 2;

class MyChild(MyParent):
    def some_method(self):
        return self._x    # Ok, since accessed from a child class

class AnotherClass:
    def some_method(self, instance_of_my_child):
        return instance_of_my_child._x   # Would be flagged as AnotherClass is not
                                         # a child class of MyParent

        # inflate them
        big_self_map = self.as_dense()
        

        big_other_map = other_map.as_dense()
        

        # add them
        dense_added = big_self_map + big_other_map

        # deflate
        sparse_added = SparseHealpix(dense_added[self._pixels_ids], self._pixels_ids, self.nside)
        

        return sparse_added

    def __sub__(self, other_map):

        # Make sure they have the same pixels
        assert np.array_equal(self._pixels_ids, other_map._pixels_ids)
class MyParent:
    def __init__(self):
        self._x = 1;
        self.y = 2;

class MyChild(MyParent):
    def some_method(self):
        return self._x    # Ok, since accessed from a child class

class AnotherClass:
    def some_method(self, instance_of_my_child):
        return instance_of_my_child._x   # Would be flagged as AnotherClass is not
                                         # a child class of MyParent
        

        big_other_map = other_map.as_dense()
        big_self_map = self.as_dense()
        

        subtraction = big_self_map - big_other_map

        sparse_subtracted = SparseHealpix(subtraction[self._pixels_ids], self._pixels_ids, self.nside)
        

        return sparse_subtracted

    def as_dense(self):
        """
        Returns the dense (i.e., full sky) representation of the map. Note that this means unwrapping the map,
        and the memory usage increases a lot.

        :return: the dense map, suitable for use with healpy routine (among other uses)
        """

        # Make the full Healpix map
        new_map = np.full(self.npix, self._fill_value)

        # Assign the active pixels their values
        new_map[self._pixels_ids] = self._partial_map

        return new_map

    def as_partial(self):

        return self._partial_map

    def set_new_values(self, new_values):
class SomeClass:
    def some_method(self):
        """Do x and return foo."""

        assert new_values.shape == self._partial_map.shape

        self._partial_map[:] = new_values



class DenseHealpix(HealpixWrapperBase):
    """
    A dense (fullsky) healpix map. In this case partial and complete are the same map.

    """

    def __init__(self, healpix_array):

        self._dense_map = healpix_array

        super(DenseHealpix, self).__init__(nside=hp.npix2nside(healpix_array.shape[0]), sparse=False)

    def as_dense(self):
        """
        Returns the complete (i.e., full sky) representation of the map. Since this is a dense map, this is identical
        to the input map

        :return: the complete map, suitable for use with healpy routine (among other uses)
        """

        return self._dense_map

    def as_partial(self):

        return self._dense_map

    def set_new_values(self, new_values):
class SomeClass:
    def some_method(self):
        """Do x and return foo."""

        assert new_values.shape == self._dense_map.shape

        self._dense_map[:] = new_values




1			import numpy as np
			0 ignored issues – show Coding Style introduced 2018-06-02 00:48 UTC by Report Bug Copy Issue Report This module should have a docstring. The coding style of this project requires that you add a docstring to this code element. Below, you find an example for methods: class SomeClass: def some_method(self): """Do x and return foo.""" If you would like to know more about docstrings, we recommend to read PEP-257: Docstring Conventions. Loading history...
2			import healpy as hp
3			import pandas as pd
4			from ..special_values import UNSEEN
5
6
7			def _not_implemented(): # pragma: no cover
8
9			raise RuntimeError("You cannot use the base class. Use the derived classes.")
10
11
12			class HealpixWrapperBase(object):
13			"""
14			A class which wrap a numpy array containing an healpix map, in order to expose always the same interface
15			independently of whether the underlying map is sparse or dense
16			"""
17
18			def __init__(self, sparse, nside):
19
20			self._nside = int(nside)
21			self._npix = hp.nside2npix(self._nside)
22			self._pixel_area = hp.nside2pixarea(self._nside, degrees=True)
23
24			self._sparse = bool(sparse)
25
26			@property
27			def is_sparse(self):
			0 ignored issues – show Coding Style introduced 2018-06-02 00:48 UTC by Report Bug Copy Issue Report This method should have a docstring. The coding style of this project requires that you add a docstring to this code element. Below, you find an example for methods: class SomeClass: def some_method(self): """Do x and return foo.""" If you would like to know more about docstrings, we recommend to read PEP-257: Docstring Conventions. Loading history...
28			return self._sparse
29
30			@property
31			def nside(self):
			0 ignored issues – show Coding Style introduced 2018-06-02 00:48 UTC by Report Bug Copy Issue Report This method should have a docstring. The coding style of this project requires that you add a docstring to this code element. Below, you find an example for methods: class SomeClass: def some_method(self): """Do x and return foo.""" If you would like to know more about docstrings, we recommend to read PEP-257: Docstring Conventions. Loading history...
32			return self._nside
33
34			@property
35			def npix(self):
36			"""
37			:return: total number of pixels for this nside. Note that mymap.npix is equivalent to
38			healpy.nside2npix(mymap.nside)
39			"""
40			return self._npix
41
42			@property
43			def pixel_area(self):
44			"""
45			:return: area (solid angle) of the healpix pixel in sq. degrees
46			"""
47			return self._pixel_area
48
49			def as_dense(self): # pragma: no cover
			0 ignored issues – show Coding Style introduced 2018-06-02 00:48 UTC by Report Bug Copy Issue Report This method should have a docstring. The coding style of this project requires that you add a docstring to this code element. Below, you find an example for methods: class SomeClass: def some_method(self): """Do x and return foo.""" If you would like to know more about docstrings, we recommend to read PEP-257: Docstring Conventions. Loading history... Coding Style introduced 2018-06-02 00:48 UTC by Report Bug Copy Issue Report This method could be written as a function/class method. If a method does not access any attributes of the class, it could also be implemented as a function or static method. This can help improve readability. For example class Foo: def some_method(self, x, y): return x + y; could be written as class Foo: @classmethod def some_method(cls, x, y): return x + y; Loading history...
50
51			return _not_implemented()
52
53			def as_partial(self): # pragma: no cover
			0 ignored issues – show Coding Style introduced 2018-06-02 00:48 UTC by Report Bug Copy Issue Report This method should have a docstring. The coding style of this project requires that you add a docstring to this code element. Below, you find an example for methods: class SomeClass: def some_method(self): """Do x and return foo.""" If you would like to know more about docstrings, we recommend to read PEP-257: Docstring Conventions. Loading history... Coding Style introduced 2018-06-02 00:48 UTC by Report Bug Copy Issue Report This method could be written as a function/class method. If a method does not access any attributes of the class, it could also be implemented as a function or static method. This can help improve readability. For example class Foo: def some_method(self, x, y): return x + y; could be written as class Foo: @classmethod def some_method(cls, x, y): return x + y; Loading history...
54
55			return _not_implemented()
56
57			def to_pandas(self):
58			"""
59			Returns a pandas Series with the dense representation of the data
60
61			:return: pd.Series, type
62			"""
63
64			return pd.Series(self.as_partial())
65
66
67			class SparseHealpix(HealpixWrapperBase):
			0 ignored issues – show Coding Style introduced 2018-06-02 00:48 UTC by Report Bug Copy Issue Report This class should have a docstring. The coding style of this project requires that you add a docstring to this code element. Below, you find an example for methods: class SomeClass: def some_method(self): """Do x and return foo.""" If you would like to know more about docstrings, we recommend to read PEP-257: Docstring Conventions. Loading history...
68
69			def __init__(self, partial_map, pixels_ids, nside, fill_value=UNSEEN):
70
71			self._partial_map = partial_map
72			self._pixels_ids = pixels_ids
73			self._fill_value = fill_value
74
75			super(SparseHealpix, self).__init__(sparse=True, nside=nside)
76
77			def __add__(self, other_map):
78
			0 ignored issues – show Coding Style introduced 2018-12-04 16:42 UTC by Report Bug Copy Issue Report Trailing whitespace Loading history...
79			# Make sure they have the same pixels
80			assert np.array_equal(self._pixels_ids, other_map._pixels_ids)
			0 ignored issues – show Coding Style Best Practice introduced 2018-12-04 16:42 UTC by Report Bug Copy Issue Report It seems like `_pixels_ids` was declared protected and should not be accessed from this context. Prefixing a member variable `_` is usually regarded as the equivalent of declaring it with protected visibility that exists in other languages. Consequentially, such a member should only be accessed from the same class or a child class: class MyParent: def __init__(self): self._x = 1; self.y = 2; class MyChild(MyParent): def some_method(self): return self._x # Ok, since accessed from a child class class AnotherClass: def some_method(self, instance_of_my_child): return instance_of_my_child._x # Would be flagged as AnotherClass is not # a child class of MyParent Loading history...
81
82			# inflate them
83			big_self_map = self.as_dense()
84
			0 ignored issues – show Coding Style introduced 2018-12-04 16:42 UTC by Report Bug Copy Issue Report Trailing whitespace Loading history...
85			big_other_map = other_map.as_dense()
86
			0 ignored issues – show Coding Style introduced 2018-12-04 16:42 UTC by Report Bug Copy Issue Report Trailing whitespace Loading history...
87			# add them
88			dense_added = big_self_map + big_other_map
89
90			# deflate
91			sparse_added = SparseHealpix(dense_added[self._pixels_ids], self._pixels_ids, self.nside)
92
			0 ignored issues – show Coding Style introduced 2018-12-04 16:42 UTC by Report Bug Copy Issue Report Trailing whitespace Loading history...
93			return sparse_added
94
95			def __sub__(self, other_map):
96
97			# Make sure they have the same pixels
98			assert np.array_equal(self._pixels_ids, other_map._pixels_ids)
			0 ignored issues – show Coding Style Best Practice introduced 2018-12-04 16:42 UTC by Report Bug Copy Issue Report It seems like `_pixels_ids` was declared protected and should not be accessed from this context. Prefixing a member variable `_` is usually regarded as the equivalent of declaring it with protected visibility that exists in other languages. Consequentially, such a member should only be accessed from the same class or a child class: class MyParent: def __init__(self): self._x = 1; self.y = 2; class MyChild(MyParent): def some_method(self): return self._x # Ok, since accessed from a child class class AnotherClass: def some_method(self, instance_of_my_child): return instance_of_my_child._x # Would be flagged as AnotherClass is not # a child class of MyParent Loading history...
99
			0 ignored issues – show Coding Style introduced 2018-12-04 16:42 UTC by Report Bug Copy Issue Report Trailing whitespace Loading history...
100			big_other_map = other_map.as_dense()
101			big_self_map = self.as_dense()
102
			0 ignored issues – show Coding Style introduced 2018-12-04 16:42 UTC by Report Bug Copy Issue Report Trailing whitespace Loading history...
103			subtraction = big_self_map - big_other_map
104
105			sparse_subtracted = SparseHealpix(subtraction[self._pixels_ids], self._pixels_ids, self.nside)
106
			0 ignored issues – show Coding Style introduced 2018-12-04 16:42 UTC by Report Bug Copy Issue Report Trailing whitespace Loading history...
107			return sparse_subtracted
108
109			def as_dense(self):
110			"""
111			Returns the dense (i.e., full sky) representation of the map. Note that this means unwrapping the map,
112			and the memory usage increases a lot.
113
114			:return: the dense map, suitable for use with healpy routine (among other uses)
115			"""
116
117			# Make the full Healpix map
118			new_map = np.full(self.npix, self._fill_value)
119
120			# Assign the active pixels their values
121			new_map[self._pixels_ids] = self._partial_map
122
123			return new_map
124
125			def as_partial(self):
126
127			return self._partial_map
128
129			def set_new_values(self, new_values):
			0 ignored issues – show Coding Style introduced 2018-06-02 00:48 UTC by Report Bug Copy Issue Report This method should have a docstring. The coding style of this project requires that you add a docstring to this code element. Below, you find an example for methods: class SomeClass: def some_method(self): """Do x and return foo.""" If you would like to know more about docstrings, we recommend to read PEP-257: Docstring Conventions. Loading history...
130
131			assert new_values.shape == self._partial_map.shape
132
133			self._partial_map[:] = new_values
134
135
136
137			class DenseHealpix(HealpixWrapperBase):
138			"""
139			A dense (fullsky) healpix map. In this case partial and complete are the same map.
140
141			"""
142
143			def __init__(self, healpix_array):
144
145			self._dense_map = healpix_array
146
147			super(DenseHealpix, self).__init__(nside=hp.npix2nside(healpix_array.shape[0]), sparse=False)
148
149			def as_dense(self):
150			"""
151			Returns the complete (i.e., full sky) representation of the map. Since this is a dense map, this is identical
152			to the input map
153
154			:return: the complete map, suitable for use with healpy routine (among other uses)
155			"""
156
157			return self._dense_map
158
159			def as_partial(self):
160
161			return self._dense_map
162
163			def set_new_values(self, new_values):
			0 ignored issues – show Coding Style introduced 2018-06-02 00:48 UTC by Report Bug Copy Issue Report This method should have a docstring. The coding style of this project requires that you add a docstring to this code element. Below, you find an example for methods: class SomeClass: def some_method(self): """Do x and return foo.""" If you would like to know more about docstrings, we recommend to read PEP-257: Docstring Conventions. Loading history...
164
165			assert new_values.shape == self._dense_map.shape
166
167			self._dense_map[:] = new_values
168
			0 ignored issues – show coding-style introduced 2018-06-02 00:48 UTC by Report Bug Copy Issue Report Trailing newlines Loading history...
169

giacomov / hawc_hal

Pull Request — master (#17)

DenseHealpix.as_partial() A

Complexity

Size

Duplication

Importance

Duplication Side-by-Side

Filter issues like