torchio.datasets.fpg

Complexity

Total Complexity

3

Size/Duplication

Total Lines	211
Duplicated Lines	0 %

Importance

Changes

0

2 Methods

Rating	Name	Duplication	Size	Complexity
A	FPG.__init__()	0	34	2
A	FPG.plot()	0	2	1

import urllib.parse
from torchvision.datasets.utils import download_url
from .. import Subject, ScalarImage, LabelMap, DATA_REPO
from ..utils import get_torchio_cache_dir
from ..data.io import read_matrix


class FPG(Subject):
    """Some images of myself for testing."""
    def __init__(self):
        repo_dir = urllib.parse.urljoin(DATA_REPO, 'fernando/')

        self.filenames = {
            't1': 't1.nii.gz',
            'seg': 't1_seg_gif.nii.gz',
            'rigid': 't1_to_mni.tfm',
            'affine': 't1_to_mni_affine.h5',
        }

        download_root = get_torchio_cache_dir() / 'fpg'
        for filename in self.filenames.values():
            download_url(
                urllib.parse.urljoin(repo_dir, filename),
                download_root,
                filename=filename,
            )

        rigid = read_matrix(download_root / self.filenames['rigid'])
        affine = read_matrix(download_root / self.filenames['affine'])
        subject_dict = {
            't1': ScalarImage(
                download_root / self.filenames['t1'],
                rigid_matrix=rigid,
                affine_matrix=affine,
            ),
            'seg': LabelMap(
                download_root / self.filenames['seg'],
                rigid_matrix=rigid,
                affine_matrix=affine,
            ),
        }
        super().__init__(subject_dict)
        self.gif_colors = GIF_COLORS

    def plot(self, *args, **kwargs):
        super().plot(*args, **kwargs, cmap_dict=dict(seg=self.gif_colors))


GIF_COLORS = {
    0: (0, 0, 0),
    1: (0, 0, 0),
    5: (127, 255, 212),
    12: (240, 230, 140),
    16: (176, 48, 96),
    24: (48, 176, 96),
    31: (48, 176, 96),
    32: (103, 255, 255),
    33: (103, 255, 255),
    35: (238, 186, 243),
    36: (119, 159, 176),
    37: (122, 186, 220),
    38: (122, 186, 220),
    39: (96, 204, 96),
    40: (96, 204, 96),
    41: (220, 247, 164),
    42: (220, 247, 164),
    43: (205, 62, 78),
    44: (205, 62, 78),
    45: (225, 225, 225),
    46: (225, 225, 225),
    47: (60, 60, 60),
    48: (220, 216, 20),
    49: (220, 216, 20),
    50: (196, 58, 250),
    51: (196, 58, 250),
    52: (120, 18, 134),
    53: (120, 18, 134),
    54: (255, 165, 0),
    55: (255, 165, 0),
    56: (12, 48, 255),
    57: (12, 48, 225),
    58: (236, 13, 176),
    59: (236, 13, 176),
    60: (0, 118, 14),
    61: (0, 118, 14),
    62: (165, 42, 42),
    63: (165, 42, 42),
    64: (160, 32, 240),
    65: (160, 32, 240),
    66: (56, 192, 255),
    67: (56, 192, 255),
    70: (255, 225, 225),
    72: (184, 237, 194),
    73: (180, 231, 250),
    74: (225, 183, 231),
    76: (180, 180, 180),
    77: (180, 180, 180),
    81: (245, 255, 200),
    82: (255, 230, 255),
    83: (245, 245, 245),
    84: (220, 255, 220),
    85: (220, 220, 220),
    86: (200, 255, 255),
    87: (250, 220, 200),
    89: (245, 255, 200),
    90: (255, 230, 255),
    91: (245, 245, 245),
    92: (220, 255, 220),
    93: (220, 220, 220),
    94: (200, 255, 255),
    96: (140, 125, 255),
    97: (140, 125, 255),
    101: (255, 62, 150),
    102: (255, 62, 150),
    103: (160, 82, 45),
    104: (160, 82, 45),
    105: (165, 42, 42),
    106: (165, 42, 42),
    107: (205, 91, 69),
    108: (205, 91, 69),
    109: (100, 149, 237),
    110: (100, 149, 237),
    113: (135, 206, 235),
    114: (135, 206, 235),
    115: (250, 128, 114),
    116: (250, 128, 114),
    117: (255, 255, 0),
    118: (255, 255, 0),
    119: (221, 160, 221),
    120: (221, 160, 221),
    121: (0, 238, 0),
    122: (0, 238, 0),
    123: (205, 92, 92),
    124: (205, 92, 92),
    125: (176, 48, 96),
    126: (176, 48, 96),
    129: (152, 251, 152),
    130: (152, 251, 152),
    133: (50, 205, 50),
    134: (50, 205, 50),
    135: (0, 100, 0),
    136: (0, 100, 0),
    137: (173, 216, 230),
    138: (173, 216, 230),
    139: (153, 50, 204),
    140: (153, 50, 204),
    141: (160, 32, 240),
    142: (160, 32, 240),
    143: (0, 206, 208),
    144: (0, 206, 208),
    145: (51, 50, 135),
    146: (51, 50, 135),
    147: (135, 50, 74),
    148: (135, 50, 74),
    149: (218, 112, 214),
    150: (218, 112, 214),
    151: (240, 230, 140),
    152: (240, 230, 140),
    153: (255, 255, 0),
    154: (255, 255, 0),
    155: (255, 110, 180),
    156: (255, 110, 180),
    157: (0, 255, 255),
    158: (0, 255, 255),
    161: (100, 50, 100),
    162: (100, 50, 100),
    163: (178, 34, 34),
    164: (178, 34, 34),
    165: (255, 0, 255),
    166: (255, 0, 255),
    167: (39, 64, 139),
    168: (39, 64, 139),
    169: (255, 99, 71),
    170: (255, 99, 71),
    171: (255, 69, 0),
    172: (255, 69, 0),
    173: (210, 180, 140),
    174: (210, 180, 140),
    175: (0, 255, 127),
    176: (0, 255, 127),
    177: (74, 155, 60),
    178: (74, 155, 60),
    179: (255, 215, 0),
    180: (255, 215, 0),
    181: (238, 0, 0),
    182: (238, 0, 0),
    183: (46, 139, 87),
    184: (46, 139, 87),
    185: (238, 201, 0),
    186: (238, 201, 0),
    187: (102, 205, 170),
    188: (102, 205, 170),
    191: (255, 218, 185),
    192: (255, 218, 185),
    193: (238, 130, 238),
    194: (238, 130, 238),
    195: (255, 165, 0),
    196: (255, 165, 0),
    197: (255, 192, 203),
    198: (255, 192, 203),
    199: (244, 222, 179),
    200: (244, 222, 179),
    201: (208, 32, 144),
    202: (208, 32, 144),
    203: (34, 139, 34),
    204: (34, 139, 34),
    205: (125, 255, 212),
    206: (127, 255, 212),
    207: (0, 0, 128),
    208: (0, 0, 128),
}